Assays

Assay: ASxPv12limmavoomDE-R Short Name: SxPv12limmavoomDE-R Assay Class: DRY Assay Type: R Title: Differential expression analysis of SxPv1.2 data in R Description: Difefrential expression analysis with limma-voom sript in R of total counts from mapping of SxPv1.2 reads to the NbV1 genome. pISA Assay creation date: 2021-11-10 pISA Assay creator: Mojca Juteršek Analyst: Mojca Juteršek Phenodata: ../../phenodata20191104.txt Featuredata: Data:

Short Name: 04_SxPv12_GeneSetEnrichment-RNAseg-GSEA Assay Class: DRY Assay Type: RNAseq-GSEA Title: GSEA of SxPv1.2 expression data Description: GSEA anaylysis with MapMan3 BINs as gene sets and SxPv1.2 logFC data. pISA Assay creation date: 2021-11-24 pISA Assay creator: Mojca Juteršek Phenodata: ../../phenodata_20191104.txt Featuredata: Data:

Files connected to study: _S_P4_SxP12-newG-DE

Short Name: SxPv1-2_fastq-QC Assay Class: DRY Assay Type: QC Title: Qulaity control of SxPv1-2 raw Illumina reads Description: FastQC of SxPv1.2 Illumina reads pISA Assay creation date: 2021-11-08 pISA Assay creator: Mojca Juteršek Phenodata: ../../phenodata_20191104.txt Featuredata: Data:

Short Name: SxPv12_mapping-CLC Assay Class: DRY Assay Type: CLC Title: CLC mapping of SxPv1.2 reads Description: Mapping SxPv1.2 Illumina reads to NbV1 genome in CLC Genomics Workbench pISA Assay creation date: 2021-11-10 pISA Assay creator: Mojca Juteršek Phenodata: ../../phenodata_20191104.txt Featuredata: Data: