Assays

Short Name: 02_CDHIT-Bioinfo Assay Class: DRY Assay Type: Bioinfo Title: Combining tr1 and tr2 using CD-HIT-EST Description: Merging and removing redundant sequences (100% identical or contained) from the merged tr1 and tr2 set pISA Assay creation date: 2021-12-16 pISA Assay creator: MPE Phenodata: None Featuredata: Data:

Assay Class: DRY Assay Type: Bioinfo Title: Combining short read de novo transcriptome with IsoSeq Description: After first round of CDHIT to combine both versions of the denovo Pcitri transcriptome, CDHIT was run again to combine it with IsoSeq isoforms and perpare a consolidates transcriptomic sequence resource for P. citri pISA Assay creation date: 2022-07-01 pISA Assay creator: Mojca Jutersek Phenodata: ../../phenodata_20190523.txt Featuredata: Data: Principal investigator: Diego Orzaez ...

Files connected to study: _S_P4_Pcitri_tr1tr2combo

Short Name: 01_renameFASTA-Bioinfo Assay Class: DRY Assay Type: Bioinfo Title: Renaming tr1 and tr2 FASTA sequences Description: Renaming is neccessary to avoid duplicate sequence names pISA Assay creation date: 2021-12-16 pISA Assay creator: MPE Phenodata: None Featuredata: Data: