Assays

Short Name: 03_limma_min50counts-R Assay Class: DRY Assay Type: R Title: Second run of limma-voom pipeline Description: Second run of limma-voom pipeline where 50 counts in at least 3 samples were required for the gene to be included in the analysis Phenodata: ../../phenodata_20181003.txt Creation date: 2018-11-15 Data: ../_A_limma-R/input/

Short Name: 04_limma_min10counts-R Assay Class: DRY Assay Type: R Title: limma-voom pipeline in R with min 10 counts in at least 3 rows Description: We tried this to see if we were missing something with min 50 counts, but nothing of much interest was discovered. Analyst: MojcaJ Phenodata: ../../phenodata_20181003.txt Featuredata: Data:

Files connected to study: _S_P4_Pcitri_genome

Short Name: 01_RNAseq-CLC Assay Class: DRY Assay Type: CLC Title: RNA-Seq analysis of mealybug samples from virgin and mated females Description: Mapping reads to P. citri draft genome using CLC Genomics Workbench Phenodata: ../../phenodata_20181003.txt Creation date: 2018-11-15 Data: http://stork/dirindex/fitostorage/datarepo/ngs_omics/NGS_pci_rna-seq_2018_mpe_Pcitri/data/ Genome reference files: ./input/

Short Name: 02_limma_min50counts-R Assay Class: DRY Assay Type: R Title: Statistical RNA-Seq analysis in R Description: Statistical analysis using only unique counts using limma-voom in R Phenodata: ../../phenodata_20181003.txt Creation date: 2018-11-15 Data: ./input/