Assays

What is an Assay?

3 Assays visible to you, out of a total of 3

_S_P4_AdPathGenes-files

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

Files connected to study: _S_P4_AdPathGenes

Submitter: Marko Petek

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_T31_mealybug

Study: _S_P4_AdPathGenes

Organisms: No organisms

SOPs: No SOPs

Data files: _STUDY_METADATA.TXT

Snapshots: No snapshots

Created: 16th May 2022 at 10:27, Last updated: 6th Nov 2024 at 15:25

_A_01-CoEXpNetViz_tr2-coexpr

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

Short Name: 01-CoEXpNetViz_tr2-coexpr Assay Class: DRY Assay Type: coexpr Title: Using CoEXpNetViz to search P citri de novo tr2 Description: We used bait genes of mevalonate pathway to try to find other pathway members pISA Assay creation date: 2019-11-21 pISA Assay creator: Marko Petek Phenodata: ../../phenodata_20190523.txt Featuredata: Data:

Submitter: Marko Petek

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_T31_mealybug

Study: _S_P4_AdPathGenes

Organisms: No organisms

SOPs: No SOPs

Data files: _Assay_METADATA.TXT, input/Mevalonate_blasting.txt, input/bait_genes.txt, input/gene_expression_matrix_link.txt, output/network/P_citri_alldata_RNAseq_TMMcpms.t..., output/network/P_citri_alldata_RNAseq_TMMcpms.t..., output/network/P_citri_alldata_RNAseq_TMMcpms.t..., output/network/README.txt, output/network/correlations_per_family.txt

Snapshots: No snapshots

Created: 16th May 2022 at 10:31, Last updated: 6th Nov 2024 at 15:25

_A_02-CoEXpNetViz_gen-coexpr

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

Short Name: 02-CoEXpNetViz_gen-coexpr Assay Class: DRY Assay Type: coexpr Title: Using CoEXpNetViz to search P citri genome Description: We used bait genes of mevalonate pathway encoded in the genome to try to find other pathway members pISA Assay creation date: 2019-11-21 pISA Assay creator: Marko Petek Phenodata: ../../phenodata_20190523.txt Featuredata: Data:

Submitter: Marko Petek

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_T31_mealybug

Study: _S_P4_AdPathGenes

Organisms: No organisms

SOPs: No SOPs

Data files: _Assay_METADATA.TXT, input/IPS_extract.P_citri.v0.braker.txt, input/Mevalonate_blasting.txt, input/Mevalonate_pathway_candidates.xlsx, input/Mevalonate_pathway_candidates_updated.xlsx, input/bait_genes.txt, input/gene_expression_matrix_link.txt, output/network_up5down5percent/interesting_gene..., output/network_up5down5percent/network/P_citri_..., output/network_up5down5percent/network/P_citri_..., output/network_up5down5percent/network/P_citri_..., output/network_up5down5percent/network/README.txt, output/network_up5down5percent/network/correlat..., output/network_upper1percent/P_citri_RNAseq_log..., output/network_upper1percent/network/P_citri_RN..., output/network_upper1percent/network/P_citri_RN..., output/network_upper1percent/network/P_citri_RN..., output/network_upper1percent/network/README.txt, output/network_upper1percent/network/correlatio...

Snapshots: No snapshots

Created: 16th May 2022 at 10:31, Last updated: 6th Nov 2024 at 15:25

Assays

Filters ×

Filters