Assays
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Cell line: Human aortic smooth muscel cells (Thermo Fisher Scientific, C-007-5C, LOT: 2164581)
Technical replicates: n=4 per condition
Conditions: C3 = TGFB1-treated SMCs C4 = PDGF-BB/IL1B-treated SMCs
Submitter: Tobias Reinberger
Biological problem addressed: Model Analysis Type
Investigation: Proteomic investigation of smooth muscle cells ...
Cell line: Human aortic smooth muscel cells (Thermo Fisher Scientific, C-007-5C, LOT: 2164581)
Technical replicates: n=4 per condition
Conditions: C3 = TGFB1-treated SMCs C4 = PDGF-BB/IL1B-treated SMCs
Submitter: Tobias Reinberger
Assay type: Experimental Assay Type
Technology type: Mass Spectrometry
Investigation: Proteomic investigation of smooth muscle cells ...
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA Sequencing
Study: Differential Expression
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA Sequencing
Study: Differential Expression
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA Sequencing
Study: Differential Expression
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA Sequencing
Study: Differential Expression
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA Sequencing
Study: Transcriptome profiling
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA Sequencing
Study: Differential Expression
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA Sequencing
Study: Differential Expression
Submitter: Ayat Ismail
Biological problem addressed: Model Analysis Type
Investigation: ONT direct RNA Sequencing
Majority direction kmer data files were used for the analysis. e.g: results/analysed_icg/xpore_cdna.all/diffmod_s1-s2/majority_direction_kmer_diffmod.table. which has been renamed to : s1_s2.table as uploaded here.
Submitter: Ayat Ismail
Biological problem addressed: Model Analysis Type
Investigation: ONT direct RNA Sequencing
Study: RNA modification detection
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA sequencing of archaean stimulated ...
Study: Transcriptome profiling
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA sequencing of archaean stimulated ...
Study: Differential expression
This compares the five conditions Control at 24 hours, Methanobrevibacter smithii (MBS) at 4 and 24 hours, Methanosphaera stadtmanae (MSS) at 4 and 24 hours in a joint model. The respective conditions are abbreviated Control_24h, MBS_4h, MBS_24h, MSS_4h, MSS_24h
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA sequencing of archaean stimulated ...
Study: Differential expression
Submitter: Inken Wohlers
Biological problem addressed: Model Analysis Type
Investigation: Illumina RNA sequencing of archaean stimulated ...
Study: Transcriptome profiling
A file combining all CpG sites from the differentially methylated regions (DMRs) of the control, t0, and t1 groups was generated. This combined file, containing methylation values extracted from the bedgraph files, was then used to create a PCA plot and a single heatmap for all CpG sites across the regions.
Submitter: Ayat Ismail
Biological problem addressed: Modelling analysis
Investigation: 1 hidden item
Study: 1 hidden item
