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output/STAR_VF_03_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_01_mapToGenomeAll-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_01_mapToGenomeAll-STAR

Download

Created: 16th May 2022 at 11:28, Last updated: 6th Nov 2024 at 15:27

output/STAR_VF_05_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_01_mapToGenomeAll-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_01_mapToGenomeAll-STAR

Download

Created: 16th May 2022 at 11:28, Last updated: 6th Nov 2024 at 15:27

output/STAR_MF_08_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_01_mapToGenomeAll-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_01_mapToGenomeAll-STAR

Download

Created: 16th May 2022 at 11:27, Last updated: 6th Nov 2024 at 15:26

output/STAR_MF_09_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_01_mapToGenomeAll-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_01_mapToGenomeAll-STAR

Download

Created: 16th May 2022 at 11:27, Last updated: 6th Nov 2024 at 15:26

output/STAR_MF_10_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_01_mapToGenomeAll-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_01_mapToGenomeAll-STAR

Download

Created: 16th May 2022 at 11:27, Last updated: 6th Nov 2024 at 15:26

output/STAR_MF_11_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_01_mapToGenomeAll-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_01_mapToGenomeAll-STAR

Download

Created: 16th May 2022 at 11:27, Last updated: 6th Nov 2024 at 15:26

output/STAR_PC_ALL_1_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_01_mapToGenomeAll-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_01_mapToGenomeAll-STAR

Download

Created: 16th May 2022 at 11:27, Last updated: 6th Nov 2024 at 15:26

output/STAR_PC_F_1_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_01_mapToGenomeAll-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_01_mapToGenomeAll-STAR

Download

Created: 16th May 2022 at 11:27, Last updated: 6th Nov 2024 at 15:26

output/STAR_PC_F_2_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_01_mapToGenomeAll-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_01_mapToGenomeAll-STAR

Download

Created: 16th May 2022 at 11:27, Last updated: 6th Nov 2024 at 15:26

output/STAR_PC_F_3_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_01_mapToGenomeAll-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_01_mapToGenomeAll-STAR

Download

Created: 16th May 2022 at 11:27, Last updated: 6th Nov 2024 at 15:26

output/R_graphs/PCA_biplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_04_limma_min10counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_04_limma_min10counts-R

Download

Created: 16th May 2022 at 12:18, Last updated: 6th Nov 2024 at 15:26

output/R_graphs/SIGMA_vs_A_plot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_04_limma_min10counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_04_limma_min10counts-R

Download

Created: 16th May 2022 at 12:18, Last updated: 6th Nov 2024 at 15:26

output/R_graphs/voom_mean-variance_trend.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_04_limma_min10counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_04_limma_min10counts-R

Download

Created: 16th May 2022 at 12:18, Last updated: 6th Nov 2024 at 15:26

other/PCA_biplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_03_limma_min50counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_03_limma_min50counts-R

Download

Created: 16th May 2022 at 11:25, Last updated: 6th Nov 2024 at 15:26

other/SIGMA_vs_A_plot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_03_limma_min50counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_03_limma_min50counts-R

Download

Created: 16th May 2022 at 11:25, Last updated: 6th Nov 2024 at 15:26

other/voom_mean-variance_trend.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_03_limma_min50counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_03_limma_min50counts-R

Download

Created: 16th May 2022 at 11:25, Last updated: 6th Nov 2024 at 15:26

scripts/Mealybug_RNAseq_limma-voom_min50counts.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_03_limma_min50counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_03_limma_min50counts-R

Download

Created: 16th May 2022 at 11:26, Last updated: 6th Nov 2024 at 15:26

scripts/limmavoom_min10.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_04_limma_min10counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_04_limma_min10counts-R

Download

Created: 16th May 2022 at 11:26, Last updated: 6th Nov 2024 at 15:26

output/R_graphs/density_plot_before_lowexpr_filter.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_04_limma_min10counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_04_limma_min10counts-R

Download

Created: 16th May 2022 at 12:17, Last updated: 6th Nov 2024 at 15:26

output/R_graphs/log10filteredcounts_boxplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_04_limma_min10counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_04_limma_min10counts-R

Download

Created: 16th May 2022 at 12:17, Last updated: 6th Nov 2024 at 15:26

output/R_graphs/log10rawcounts_boxplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_04_limma_min10counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_04_limma_min10counts-R

Download

Created: 16th May 2022 at 12:17, Last updated: 6th Nov 2024 at 15:26

output/R_graphs/norm_cf_lcpm_MDS.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_04_limma_min10counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_04_limma_min10counts-R

Download

Created: 16th May 2022 at 12:18, Last updated: 6th Nov 2024 at 15:26

output/R_graphs/norm_counts_filtered_MDS.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_04_limma_min10counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_04_limma_min10counts-R

Download

Created: 16th May 2022 at 12:18, Last updated: 6th Nov 2024 at 15:26

output/R_graphs/norm_counts_raw&filtered_densityplots.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_04_limma_min10counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_04_limma_min10counts-R

Download

Created: 16th May 2022 at 12:18, Last updated: 6th Nov 2024 at 15:26

other/voom_mean-variance_trend.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_02_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_02_limma-R

Download

Created: 16th May 2022 at 11:23, Last updated: 6th Nov 2024 at 15:26

other/voom_mean-variance_trend.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_02_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_02_limma-R

Download

Created: 16th May 2022 at 11:24, Last updated: 6th Nov 2024 at 15:26

scripts/Mealybug_RNAseq_limma-voom.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_02_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_02_limma-R

Download

Created: 16th May 2022 at 11:25, Last updated: 6th Nov 2024 at 15:26

other/density_plot_before_lowexpr_filter.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_03_limma_min50counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_03_limma_min50counts-R

Download

Created: 16th May 2022 at 11:25, Last updated: 6th Nov 2024 at 15:26

other/log10filteredcounts_boxplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_03_limma_min50counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_03_limma_min50counts-R

Download

Created: 16th May 2022 at 11:25, Last updated: 6th Nov 2024 at 15:26

other/log10rawcounts_boxplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome/_A_03_limma_min50counts-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome

Assays: _A_03_limma_min50counts-R

Download

Created: 16th May 2022 at 11:25, Last updated: 6th Nov 2024 at 15:26

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