Assays

What is an Assay?

99 Assays visible to you, out of a total of 110

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: No SOPs

Data files: JP_IVBCG_AllMetadata.xlsx

Snapshots: No snapshots

Created: 4th Dec 2024 at 20:39, Last updated: 5th Dec 2024 at 16:15

Library Creation - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: samples-publishJP_IVCBG_DNA.xlsx, samples-publishJP_IVCBG_TIS.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:23, Last updated: 5th Dec 2024 at 16:15

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: P.BRY-241204-V1_StudyDesign_JP_IVBCG.docx

Data files: samples-publishJP_IVCBG_PAV.xlsx, samples-publishJP_IVCBG_TIS.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:22, Last updated: 5th Dec 2024 at 16:15

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: samples-publishJP_IVCBG_D.SEQ.xlsx, samples-publishJP_IVCBG_DNA.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:24, Last updated: 4th Dec 2024 at 21:13

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Data files: samples-publishJP_IVCBG_A.SCXP.xlsx, samples-publishJP_IVCBG_D.SEQ.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:25, Last updated: 4th Dec 2024 at 21:13

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: P.BRY-241204-V1_StudyDesign_JP_IVBCG.docx

Data files: samples-publishJP_IVCBG_BAC.xlsx, samples-publishJP_IVCBG_NHP.xlsx, samples-publishJP_IVCBG_PAV.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:20, Last updated: 4th Dec 2024 at 21:13

Model Validation

Hi-IMPAcTB

Training data for this Model is available: https://fairdomhub.org/studies/1198

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.LAU-240111-V1_SW_LMM_ReadMe.docx

Data files: samples-publishSW_A.FLOW.xlsx, samples-publishSW_A.TITR.xlsx, samples-publishSW_MDL.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:45, Last updated: 9th Oct 2024 at 19:32

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: No SOPs

Data files: RITUX SW - All Metadata.xlsx

Snapshots: No snapshots

Created: 17th Sep 2024 at 20:29, Last updated: 18th Sep 2024 at 14:53

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240411-V1_Flynn_RITUX_Flow_Cytometry_Prot...

Data files: samples-publishSW_A.FLOW.xlsx, samples-publishSW_D.FLOW.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:44, Last updated: 18th Sep 2024 at 14:53

Antibody Titer Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.ALT-231222-V1_ivbcg_ritux_ab_methods.docx

Data files: samples-publishSW_A.TITR.xlsx, samples-publishSW_D.TITR.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:43, Last updated: 18th Sep 2024 at 14:53

Antibody Titer - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.ALT-231222-V1_ivbcg_ritux_ab_methods.docx

Data files: samples-publishSW_D.TITR.xlsx, samples-publishSW_TIS.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:42, Last updated: 18th Sep 2024 at 14:53

PET/CT Scan - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-230523-V1_PET_CT_Imaging

Data files: samples-publishSW_D.IMG.xlsx, samples-publishSW_PAV.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:41, Last updated: 18th Sep 2024 at 14:53

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240808-V1_TISs_RITUX.docx

Data files: samples-publishSW_PAV.xlsx, samples-publishSW_TIS.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:40, Last updated: 18th Sep 2024 at 14:53

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240808-V1_NHPs_RITUX.docx

Data files: samples-publishSW_NHP.xlsx, samples-publishSW_PAV.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:39, Last updated: 18th Sep 2024 at 14:53

Flow Cytometry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240411-V1_Flynn_RITUX_Flow_Cytometry_Prot...

Data files: RITUX_Panel_Cohort.xlsx, samples-publishSW_AB.xlsx, samples-publishSW_ABP.xlsx, samples-publishSW_D.FLOW.xlsx, samples-publishSW_TIS.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:43, Last updated: 8th Aug 2024 at 19:58

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: No SOPs

Data files: CD4_AllMetadata.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 20:32, Last updated: 16th Jul 2024 at 20:49

PET-CT Scan - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: P.FLY-230523-V1_PET_CT_Imaging

Data files: samples-publishJB_CD4_D.IMG.xlsx, samples-publishJB_CD4_PAV.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:19, Last updated: 16th Jul 2024 at 20:49

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publishJB_CD4_A.FLOW.xlsx, samples-publishJB_CD4_D.FLOW.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:18, Last updated: 16th Jul 2024 at 20:49

Flow Cytometry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: P.FLY-240716_V1_CD4_ICS_FlowCytometry.docx

Data files: samples-publishJB_CD4_AB.xlsx, samples-publishJB_CD4_ABP.xlsx, samples-publishJB_CD4_D.FLOW.xlsx, samples-publishJB_CD4_TIS.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:10, Last updated: 16th Jul 2024 at 20:49

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: P.FLY-240716_V1_CD4_scRNAseq.docx, P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Data files: samples-publishJB_CD4_A.SCXP.xlsx, samples-publishJB_CD4_D.SEQ.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:07, Last updated: 16th Jul 2024 at 20:48

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: P.FLY-240716_V1_CD4_scRNAseq.docx, P.FOR-230503-V1_Barcoding_Amplicon_Feb2023

Data files: samples-publishJB_CD4_D.SEQ.xlsx, samples-publishJB_CD4_D.SEQ.xlsx, samples-publishJB_CD4_DNA.xlsx, samples-publishJB_CD4_DNA.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:05, Last updated: 16th Jul 2024 at 20:48

Library Prep - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: P.FOR-230503-V1_Barcoding_Amplicon_Feb2023, P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: samples-publishJB_CD4_BAC.xlsx, samples-publishJB_CD4_DNA.xlsx, samples-publishJB_CD4_DNA.xlsx, samples-publishJB_CD4_TIS.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:05, Last updated: 16th Jul 2024 at 20:48

Bacterial Extraction - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: P.FOR-231011_Bacterial Extraction

Data files: samples-publishJB_CD4_BAC.xlsx, samples-publishJB_CD4_TIS.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:04, Last updated: 16th Jul 2024 at 20:48

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as..., P.FLY-240716_V1_CD4_CFU_LibraryIdentification.docx, P.FLY-240716_V1_CD4_NX_Procedure.docx

Data files: samples-publishJB_CD4_PAV.xlsx, samples-publishJB_CD4_TIS.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:03, Last updated: 16th Jul 2024 at 20:48

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: P.FLY-240716_V1_CD4_NHPs.docx, P.FLY-240716_V1_CD4_NX_Procedure.docx

Data files: CD4-Depletion-Reinfection Study Design Graphic, samples-publishJB_CD4_AB.xlsx, samples-publishJB_CD4_BAC.xlsx, samples-publishJB_CD4_NHP.xlsx, samples-publishJB_CD4_PAV.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:02, Last updated: 16th Jul 2024 at 20:48

Digitally Barcoded Mtb Matrix Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: No SOPs

Data files: aCD4_cleaned_data_stats_circos, samples-publishJB_CD4_A.DBMM.xlsx, samples-publishJB_CD4_D.SEQ.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:09, Last updated: 16th Jul 2024 at 20:30

Bacterial Challenge - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2024-06-04-BAC.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:20, Last updated: 6th Jun 2024 at 19:12

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: No SOPs

Data files: Fc-Engineered - All Metadata

Snapshots: No snapshots

Created: 5th Jun 2024 at 18:52, Last updated: 6th Jun 2024 at 19:12

Antibody-dependent NK Cell Activation - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-ADNKA-Protocol-I...

Data files: samples-publish2024-06-04-AB.xlsx, samples-publish2024-06-04-CHM.xlsx, samples-publish2024-06-04-D.ADNKA.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:00, Last updated: 6th Jun 2024 at 19:12

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240411-V1_Fc-engineering-scRNAseq-Protoco...

Data files: samples-publish2024-06-04-A.SCXP.xlsx, samples-publish2024-06-04-DNA.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:04, Last updated: 6th Jun 2024 at 19:12

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