Data files

Measurements of photosynthetic activity, namely net photosynthesis (Pn), stomatal conductance (Cond), actual photochemical efficiency (Fv’/Fm’), potential photochemical activity (Fv/Fm), chlorophyll content (SPAD) and electron transport rate (ETR).

Statistical analysis of measurements of photosynthetic parameters.

qPCR measured values of Potato virus Y (PVY).

Table connecting MOA Investigation sample ID's and GEO sample identifiers.

QC filtered and RSN normalised values for all MOA samples with microarray measurements.

Differential expression of genes between various comparison groups (Sheet: comparisons), with log2-fold changes and Benjamini-Hochberg FDR corrected p-values given.

Validation of microarray results by RT-qPCR. RT-qPCR measurements for eight genes: biologically relevant for photosynthesis chlorophyll a-b binding protein (CAB, CAB_NEW) and RuBisCO activase (RA); for defense response three classes of β-1,3-glucanases (Glu-I, Glu-II, Glu-III) and pathogenesis-related protein1b (PR-1b); and for sugar metabolism granule bound starch synthase I (GBSSI) and cell wall invertase (INV).

RT-qPCR assays for microarray validation described using the MIQE standard.

Table connecting MOA sample identifiers to GEO identifiers related to sRNAomics dataset.

miRNAs and their counts identified in the MOA samples for sRNA-Seq.

miRNAs and their RPM normalised counts identified in the MOA samples for sRNA-Seq.

Differential expression of miRNAs between various comparison groups (Sheet: comparisons), with log2-fold changes and Benjamini-Hochberg FDR corrected p-values given.