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output/novi.fasta

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:35, Last updated: 6th Nov 2024 at 15:27

output/Pcitri.collapsed.filtered.gff.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:36, Last updated: 6th Nov 2024 at 15:27

output/Pcitri.collapsed.filtered.rep.fa.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:36, Last updated: 6th Nov 2024 at 15:27

output/Pcitri.collapsed.gff.unfuzzy.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:36, Last updated: 6th Nov 2024 at 15:27

output/Pcitri.collapsed.gff.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:36, Last updated: 6th Nov 2024 at 15:27

output/Pcitri.collapsed.rep.fa.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:36, Last updated: 6th Nov 2024 at 15:27

output/Pcitri.ignored_ids.fasta.base_freq

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:36, Last updated: 6th Nov 2024 at 15:27

output/Pcitri.ignored_ids.fasta.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:36, Last updated: 6th Nov 2024 at 15:27

reports/pt_025_001_report.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_01_NGI-IsoSeq/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_01_NGI-IsoSeq

Download

Created: 16th May 2022 at 11:35, Last updated: 6th Nov 2024 at 15:27

reports/README.MD

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_01_NGI-IsoSeq/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_01_NGI-IsoSeq

Download

Created: 16th May 2022 at 11:35, Last updated: 6th Nov 2024 at 15:27

input/hq_lq_isoforms.fasta.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:35, Last updated: 6th Nov 2024 at 15:27

input/pt_025_001.hq_transcripts.fasta.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:35, Last updated: 6th Nov 2024 at 15:27

input/pt_025_001.lq_transcripts.fasta

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:35, Last updated: 6th Nov 2024 at 15:27

input/README.MD

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:35, Last updated: 6th Nov 2024 at 15:27

output/hq_lq_isoforms.fasta.sam.log

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:35, Last updated: 6th Nov 2024 at 15:27

output/hq_lq_isoforms.fasta.sort.bam

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_02_cDNAcupcake-dry/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_02_cDNAcupcake-dry

Download

Created: 16th May 2022 at 11:35, Last updated: 6th Nov 2024 at 15:27

output/raw/README.MD

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_01_NGI-IsoSeq/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_01_NGI-IsoSeq

Download

Created: 16th May 2022 at 12:18, Last updated: 6th Nov 2024 at 15:27

reports/IsoSeq_drylab_pipeline_info.pptx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _S_P4_Pcitri_IsoSeq-files

Download

Created: 16th May 2022 at 10:34, Last updated: 6th Nov 2024 at 15:27

reports/transcript_lengths.pptx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _S_P4_Pcitri_IsoSeq-files

Download

Created: 16th May 2022 at 10:34, Last updated: 6th Nov 2024 at 15:27

reports/WP3_IsoSeq_alignments.docx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _S_P4_Pcitri_IsoSeq-files

Download

Created: 16th May 2022 at 10:34, Last updated: 6th Nov 2024 at 15:27

other/PCA_biplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_02_mapToGenomeAll_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_02_mapToGenomeAll_limma-R

Download

Created: 16th May 2022 at 11:34, Last updated: 6th Nov 2024 at 15:27

other/SIGMA_vs_A_plot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_02_mapToGenomeAll_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_02_mapToGenomeAll_limma-R

Download

Created: 16th May 2022 at 11:34, Last updated: 6th Nov 2024 at 15:27

other/TMMnormLOGcpm_boxplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_02_mapToGenomeAll_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_02_mapToGenomeAll_limma-R

Download

Created: 16th May 2022 at 11:34, Last updated: 6th Nov 2024 at 15:27

other/voom_mean-variance_trend.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_02_mapToGenomeAll_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_02_mapToGenomeAll_limma-R

Download

Created: 16th May 2022 at 11:34, Last updated: 6th Nov 2024 at 15:27

scripts/mapToGenomeAll_DE_limma-voom.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_02_mapToGenomeAll_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_02_mapToGenomeAll_limma-R

Download

Created: 16th May 2022 at 11:34, Last updated: 6th Nov 2024 at 15:27

output/README.MD

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_01_NGI-IsoSeq/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_01_NGI-IsoSeq

Download

Created: 16th May 2022 at 11:34, Last updated: 6th Nov 2024 at 15:27

input/STAR_VF_03_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_02_mapToGenomeAll_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_02_mapToGenomeAll_limma-R

Download

Created: 16th May 2022 at 11:33, Last updated: 6th Nov 2024 at 15:27

input/STAR_VF_05_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_02_mapToGenomeAll_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_02_mapToGenomeAll_limma-R

Download

Created: 16th May 2022 at 11:33, Last updated: 6th Nov 2024 at 15:27

input/STAR_VF_06_PE_ReadsPerGene.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_02_mapToGenomeAll_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_02_mapToGenomeAll_limma-R

Download

Created: 16th May 2022 at 11:33, Last updated: 6th Nov 2024 at 15:27

other/density_plot_before_lowexpr_filter.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_genome_extSamples/_A_02_mapToGenomeAll_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_genome_extSamples

Assays: _A_02_mapToGenomeAll_limma-R

Download

Created: 16th May 2022 at 11:33, Last updated: 6th Nov 2024 at 15:27

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