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228 Documents visible to you, out of a total of 228

other/testing_ZymoBIOMICS DNA Mini kit/zymoBIOMICS_DNA_Mini_Kit_test_CPBgutContent_elucija50ul_toplavoda.ndv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:10, Last updated: 12th Nov 2021 at 23:10

other/testing_ZymoBIOMICS DNA Mini kit/zymoBIOMICS_DNA_Mini_Kit_test_CPBgutContent_elucija100ul.ndv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:10, Last updated: 12th Nov 2021 at 23:10

other/testing_ZymoBIOMICS DNA Mini kit/ZymoBIOMICS_2try.xps

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:10, Last updated: 12th Nov 2021 at 23:10

other/testing_ZymoBIOMICS DNA Mini kit/ZymoBIOMICS_1try.xps

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:10, Last updated: 12th Nov 2021 at 23:10

other/testing_ZymoBIOMICS DNA Mini kit/zymoBIOMICS DNA Mini kit CPBgutContent_09112017.xcf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:10, Last updated: 12th Nov 2021 at 23:10

other/testing_ZymoBIOMICS DNA Mini kit/zymoBIOMICS DNA Mini kit CPBgutContent_09112017.JPG

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:10, Last updated: 12th Nov 2021 at 23:10

other/testing_ZymoBIOMICS DNA Mini kit/zymoBIOMICS DNA Mini kit CPBgutContent 1&2.TIF

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:10, Last updated: 12th Nov 2021 at 23:10

other/testing_ZymoBIOMICS DNA Mini kit/zymoBIOMICS DNA Mini kit CPBgutContent 1&2.JPG

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:10, Last updated: 12th Nov 2021 at 23:10

other/testing_ZymoBIOMICS DNA Mini kit/20170901_CPB_gutcontent_Kristina2003_DNA_egel.pptx

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:10, Last updated: 12th Nov 2021 at 23:10

other/testing_MoBI DNA isolation kit-bad/MoBIO_DNA_isol_14112017_bad.ndv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:10, Last updated: 12th Nov 2021 at 23:10

other/testing_MoBI DNA isolation kit-bad/MoBIO_DNA_isol_10112017_bad.ndv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:09, Last updated: 12th Nov 2021 at 23:10

other/testing_MoBI DNA isolation kit-bad/MoBIO_2try.xps

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:09, Last updated: 12th Nov 2021 at 23:09

other/testing_MoBI DNA isolation kit-bad/MoBIO_1try.xps

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 23:07, Last updated: 12th Nov 2021 at 23:07

output/warnings.log

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_07_allReads_meta-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_07_allReads_meta-assembly

Download

Created: 12th Nov 2021 at 23:07, Last updated: 12th Nov 2021 at 23:07

output/spades.log

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_07_allReads_meta-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_07_allReads_meta-assembly

Download

Created: 12th Nov 2021 at 23:07, Last updated: 12th Nov 2021 at 23:07

output/README.MD

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_07_allReads_meta-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_07_allReads_meta-assembly

Download

Created: 12th Nov 2021 at 23:07, Last updated: 12th Nov 2021 at 23:07

output/input_dataset.yaml

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_07_allReads_meta-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_07_allReads_meta-assembly

Download

Created: 12th Nov 2021 at 23:06, Last updated: 12th Nov 2021 at 23:06

output/dataset.info

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_07_allReads_meta-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_07_allReads_meta-assembly

Download

Created: 12th Nov 2021 at 23:06, Last updated: 12th Nov 2021 at 23:06

output/contigs5kup.fasta

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_07_allReads_meta-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_07_allReads_meta-assembly

Download

Created: 12th Nov 2021 at 23:05, Last updated: 12th Nov 2021 at 23:06

output/CPB-DNAseq_RI0000asCTRL_cut75.rcf.html

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_05_extr_reads-rcf/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_05_extr_reads-rcf

Download

Created: 12th Nov 2021 at 23:04, Last updated: 12th Nov 2021 at 23:05

output/CPB-DNAseq_RI0000asCTRL.rcf.html

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_05_extr_reads-rcf/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_05_extr_reads-rcf

Download

Created: 12th Nov 2021 at 23:03, Last updated: 12th Nov 2021 at 23:04

output/CPB-DNAseq_noCTRL_cut75.rcf.html

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_05_extr_reads-rcf/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_05_extr_reads-rcf

Download

Created: 12th Nov 2021 at 23:03, Last updated: 12th Nov 2021 at 23:03

output/CPB-DNAseq_noCTRL.rcf.html

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_05_extr_reads-rcf/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_05_extr_reads-rcf

Download

Created: 12th Nov 2021 at 23:02, Last updated: 12th Nov 2021 at 23:02

input/taxdmp.zip

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_05_extr_reads-rcf/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_05_extr_reads-rcf

Download

Created: 12th Nov 2021 at 23:01, Last updated: 12th Nov 2021 at 23:01

input/README.MD

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_05_extr_reads-rcf/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_05_extr_reads-rcf

Download

Created: 12th Nov 2021 at 23:01, Last updated: 12th Nov 2021 at 23:01

scripts/phyloseq_DESeq2.Rmd

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 23:00, Last updated: 12th Nov 2021 at 23:01

scripts/metagenomics_plots.R

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 23:00, Last updated: 12th Nov 2021 at 23:00

scripts/kraken__PCoA__Abundance&Diversity.R

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 23:00, Last updated: 12th Nov 2021 at 23:00

output/Scree_plot_PCoA.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:56, Last updated: 12th Nov 2021 at 22:56

output/s_Murine_leukemia_virus_counts_normalized.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:56, Last updated: 12th Nov 2021 at 22:56

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