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scripts/kraken__PCoA__Abundance&Diversity.R

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

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Created: 12th Nov 2021 at 23:00, Last updated: 12th Nov 2021 at 23:00

output/Scree_plot_PCoA.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

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Created: 12th Nov 2021 at 22:56, Last updated: 12th Nov 2021 at 22:56

output/s_Murine_leukemia_virus_counts_normalized.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

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Created: 12th Nov 2021 at 22:56, Last updated: 12th Nov 2021 at 22:56

output/phyloseq_DESeq2.html

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

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Created: 12th Nov 2021 at 22:55, Last updated: 12th Nov 2021 at 22:56

output/PCoA_plot_normalized.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

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Created: 12th Nov 2021 at 22:55, Last updated: 12th Nov 2021 at 22:55

output/PCoA_plot.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

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Created: 12th Nov 2021 at 22:55, Last updated: 12th Nov 2021 at 22:55

output/OTU_read_allocation_boxplot.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

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Created: 12th Nov 2021 at 22:55, Last updated: 12th Nov 2021 at 22:55

output/MAplot_dsvATPaseE_vs_water_shrinked.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

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Created: 12th Nov 2021 at 22:55, Last updated: 12th Nov 2021 at 22:55

output/MAplot_dsvATPase_vs_water.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

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Created: 12th Nov 2021 at 22:55, Last updated: 12th Nov 2021 at 22:55

output/MAplot_dsEGFP_vs_water_shinked.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:55, Last updated: 12th Nov 2021 at 22:55

output/MAplot_dsEGFP_vs_water.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:55, Last updated: 12th Nov 2021 at 22:55

output/DCA_plot.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:54, Last updated: 12th Nov 2021 at 22:54

output/barplots_interesting_bacteria_coloured2_normalized.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:54, Last updated: 12th Nov 2021 at 22:54

output/barplots_interesting_bacteria_coloured_normalized.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:54, Last updated: 12th Nov 2021 at 22:54

output/barplots_interesting_bacteria_coloured_2.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:54, Last updated: 12th Nov 2021 at 22:54

output/barplots_interesting_bacteria_coloured.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:54, Last updated: 12th Nov 2021 at 22:54

output/barplot1.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:54, Last updated: 12th Nov 2021 at 22:54

output/barplot_top_bacterial_clades_normalized.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:54, Last updated: 12th Nov 2021 at 22:54

output/barplot_top_bacterial_clades.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:54, Last updated: 12th Nov 2021 at 22:54

input/README.MD

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_04_DE_divers-R

Download

Created: 12th Nov 2021 at 22:53, Last updated: 12th Nov 2021 at 22:54

scripts/merge_metaphlan_tables.py

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_03-Centrifuge/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_03-Centrifuge

Download

Created: 12th Nov 2021 at 22:53, Last updated: 12th Nov 2021 at 22:53

input/README.MD

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_03-Centrifuge/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_03-Centrifuge

Download

Created: 12th Nov 2021 at 22:50, Last updated: 12th Nov 2021 at 22:50

reports/C101HW17122186 QC Analysis Report.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_02-DNASeq/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_02-DNASeq

Download

Created: 12th Nov 2021 at 22:50, Last updated: 12th Nov 2021 at 22:50

protocol/ZymoBIOMICS_Microbial_Community_Standard_Manual.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 22:50, Last updated: 12th Nov 2021 at 22:50

protocol/_d4300t_d4300_d4304_zymobiomics_dna_miniprep_kit-protocol.pdf

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 22:50, Last updated: 12th Nov 2021 at 22:50

output/Novogene_gel_DNA_samples_enhanced.png

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 22:49, Last updated: 12th Nov 2021 at 22:49

output/Novogene_gel_DNA_samples.png

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 22:49, Last updated: 12th Nov 2021 at 22:49

other/Novogene DNA_Sample_Information_Form.doc

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 22:49, Last updated: 12th Nov 2021 at 22:49

other/20171219_102048.jpg

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 22:49, Last updated: 12th Nov 2021 at 22:49

other/20171211_122701.jpg

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_01-DNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_01-DNAisol

Download

Created: 12th Nov 2021 at 22:49, Last updated: 12th Nov 2021 at 22:49

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