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reports/Pavian_reports.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_06_SxPv1-0_Illumina-Centrifuge/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_06_SxPv1-0_Illumina-Centrifuge

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Created: 11th Apr 2022 at 13:29, Last updated: 21st Sep 2022 at 10:47

output/hormones_byTrans.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_05_Phenotype_analysis-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_05_Phenotype_analysis-Stat

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Created: 9th Apr 2022 at 22:06, Last updated: 21st Sep 2022 at 10:47

output/hormones_byTrans1.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_05_Phenotype_analysis-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_05_Phenotype_analysis-Stat

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Created: 9th Apr 2022 at 22:06, Last updated: 21st Sep 2022 at 10:47

output/hormones_byTrans2.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_05_Phenotype_analysis-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_05_Phenotype_analysis-Stat

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Created: 9th Apr 2022 at 22:07, Last updated: 21st Sep 2022 at 10:47

output/Plant_height_all_plants.pptx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_05_Phenotype_analysis-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_05_Phenotype_analysis-Stat

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Created: 9th Apr 2022 at 22:07, Last updated: 21st Sep 2022 at 10:47

reports/NewPhenodataAnalysis.pptx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_05_Phenotype_analysis-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_05_Phenotype_analysis-Stat

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Created: 9th Apr 2022 at 22:07, Last updated: 21st Sep 2022 at 10:47

reports/phermoneContent_plantSize_transExp.pptx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_05_Phenotype_analysis-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_05_Phenotype_analysis-Stat

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Created: 9th Apr 2022 at 22:07, Last updated: 21st Sep 2022 at 10:47

scripts/hormones_bylines.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_05_Phenotype_analysis-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_05_Phenotype_analysis-Stat

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Created: 9th Apr 2022 at 22:07, Last updated: 21st Sep 2022 at 10:47

output/MJU_20200213_SxP_bylines/MJU_20200213_SxP_bylines_0_Sources.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

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Created: 11th Apr 2022 at 13:41, Last updated: 21st Sep 2022 at 10:47

scripts/VennDiagrams_DESeq2&edgeR_comparison.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

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Created: 9th Apr 2022 at 22:06, Last updated: 21st Sep 2022 at 10:47

scripts/VennDiagrams_GSEA_byLines.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

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Created: 9th Apr 2022 at 22:06, Last updated: 21st Sep 2022 at 10:47

scripts/VennDiagrams_GSEAsummary.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

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Created: 9th Apr 2022 at 22:06, Last updated: 21st Sep 2022 at 10:47

scripts/VennDiagrams_GSEAsummary_byLines.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

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Created: 9th Apr 2022 at 22:06, Last updated: 21st Sep 2022 at 10:47

scripts/vwnnea.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

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Created: 9th Apr 2022 at 22:06, Last updated: 21st Sep 2022 at 10:47

output/Comparison_of_DESeq2&edgeR/DESeq2&edgeR_comp.png

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

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Created: 11th Apr 2022 at 13:41, Last updated: 21st Sep 2022 at 10:47

output/MJU_20200213_SxP_bylines/gseaparsing-qval.pl

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

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Created: 11th Apr 2022 at 13:41, Last updated: 21st Sep 2022 at 10:47

output/MJU_20200213_SxP_bylines/gseaparsing-tags.pl

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

Download

Created: 11th Apr 2022 at 13:41, Last updated: 21st Sep 2022 at 10:47

reports/venn_DEG_logFC1.l-wt.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_02a_limmavoomDEbylines-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_02a_limmavoomDEbylines-R

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Created: 9th Apr 2022 at 22:03, Last updated: 21st Sep 2022 at 10:47

scripts/limmavoomDE_bylines.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_02a_limmavoomDEbylines-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_02a_limmavoomDEbylines-R

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Created: 9th Apr 2022 at 22:03, Last updated: 21st Sep 2022 at 10:47

input/nbe_AUS-AUGUSTUS_genes_2019-12-02.gmt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

Download

Created: 9th Apr 2022 at 22:05, Last updated: 21st Sep 2022 at 10:47

input/phenotype.cls

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

Download

Created: 9th Apr 2022 at 22:05, Last updated: 21st Sep 2022 at 10:47

input/phenotype_byLines.cls

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

Download

Created: 9th Apr 2022 at 22:05, Last updated: 21st Sep 2022 at 10:47

reports/GSEA_byLines_Results.pptx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

Download

Created: 9th Apr 2022 at 22:05, Last updated: 21st Sep 2022 at 10:47

scripts/DESeq_norm_forGSEA.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

Download

Created: 9th Apr 2022 at 22:05, Last updated: 21st Sep 2022 at 10:47

scripts/edgeR_norm_forGSEA.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

Download

Created: 9th Apr 2022 at 22:06, Last updated: 21st Sep 2022 at 10:47

scripts/GSEA Parsing Script.docx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_04_GSEA-Stat

Download

Created: 9th Apr 2022 at 22:06, Last updated: 21st Sep 2022 at 10:47

reports/SxP_1202meeting.pptx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _S_P4_SxP10-newG-DE-files

Download

Created: 9th Apr 2022 at 18:51, Last updated: 21st Sep 2022 at 10:47

input/README.MD

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_01_toNewGenome-CLC-mapping/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_01_toNewGenome-CLC-mapping

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Created: 9th Apr 2022 at 20:17, Last updated: 21st Sep 2022 at 10:47

scripts/limmavoom_DE.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_02_limmavoomDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_02_limmavoomDE-R

Download

Created: 9th Apr 2022 at 20:18, Last updated: 21st Sep 2022 at 10:47

scripts/limmavoom_DE_for_CoExpNetViz.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_02_limmavoomDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP10-newG-DE

Assays: _A_02_limmavoomDE-R

Download

Created: 9th Apr 2022 at 20:18, Last updated: 21st Sep 2022 at 10:47

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