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| # Building a BLAST database with local sequences | |||||||||
| # https://www.ncbi.nlm.nih.gov/books/NBK279688/ | |||||||||
| # $ makeblastdb | |||||||||
| FilePath | DatabaseName | Description | Source | type | |||||
| annot_stCuSTr-D_aa_all.zip | Solanum_tuberosum-stCuSTRr-Desiree_pep_all | Desiree 2019 reference leaf+ (leaf+stem+root+seedlings) transcriptome (Illumina+SOLiD), representative and alternative sequences | NIB | (p) | |||||
| annot_stCuSTr-D_aa_representatives.zip | Solanum_tuberosum-stCuSTRr-Desiree_pep_rep | Desiree 2019 reference leaf+ (leaf+stem+root+seedlings) transcriptome (Illumina+SOLiD), representative sequences | NIB | (p) | |||||
| annot_stCuSTr-D_cds_all.zip | Solanum_tuberosum-stCuSTRr-Desiree_cds_all | Desiree 2019 reference leaf+ (leaf+stem+root+seedlings) transcriptome (Illumina+SOLiD), representative and alternative sequences | NIB | (n) | |||||
| annot_stCuSTr-D_cds_representatives.zip | Solanum_tuberosum-stCuSTRr-Desiree_cds_rep | Desiree 2019 reference leaf+ (leaf+stem+root+seedlings) transcriptome (Illumina+SOLiD), representative sequences | NIB | (n) | |||||
| annot_stCuSTr-D_tr_all.zip | Solanum_tuberosum-stCuSTRr-Desiree_transcript_all | Desiree 2019 reference leaf+ (leaf+stem+root+seedlings) transcriptome (Illumina+SOLiD), representative and alternative sequences | NIB | (n) | |||||
| annot_stCuSTr-D_tr_representatives.zip | Solanum_tuberosum-stCuSTRr-Desiree_transcript_rep | Desiree 2019 reference leaf+ (leaf+stem+root+seedlings) transcriptome (Illumina+SOLiD), representative sequences | NIB | (n) | |||||
| annot_stCuSTr-P_aa_all.zip | Solanum_tuberosum-stCuSTRr-PW363_pep_all | PW363 2019 reference leaf transcriptome (Illumina+SOLiD), representative and alternative sequences | NIB | (p) | |||||
| annot_stCuSTr-P_aa_representatives.zip | Solanum_tuberosum-stCuSTRr-PW363_pep_rep | PW363 2019 reference leaf transcriptome (Illumina+SOLiD), representative sequences | NIB | (p) | |||||
| annot_stCuSTr-P_cds_all.zip | Solanum_tuberosum-stCuSTRr-PW363_cds_all | PW363 2019 reference leaf transcriptome (Illumina+SOLiD), representative and alternative sequences | NIB | (n) | |||||
| annot_stCuSTr-P_cds_representatives.zip | Solanum_tuberosum-stCuSTRr-PW363_cds_rep | PW363 2019 reference leaf transcriptome (Illumina+SOLiD), representative sequences | NIB | (n) | |||||
| annot_stCuSTr-P_tr_all.zip | Solanum_tuberosum-stCuSTRr-PW363_transcript_all | PW363 2019 reference leaf transcriptome (Illumina+SOLiD), representative and alternative sequences | NIB | (n) | |||||
| annot_stCuSTr-P_tr_representatives.zip | Solanum_tuberosum-stCuSTRr-PW363_transcript_rep | PW363 2019 reference leaf transcriptome (Illumina+SOLiD), representative sequences | NIB | (n) | |||||
| annot_stCuSTr-R_aa_all.zip | Solanum_tuberosum-stCuSTRr-Rywal_pep_all | Rywal 2019 reference leaf transcriptome (PacBio+Illumina), representative and alternative sequences | NIB | (p) | |||||
| annot_stCuSTr-R_aa_representatives.zip | Solanum_tuberosum-stCuSTRr-Rywal_pep_rep | Rywal 2019 reference leaf transcriptome (PacBio+Illumina), representative sequences | NIB | (p) | |||||
| annot_stCuSTr-R_cds_all.zip | Solanum_tuberosum-stCuSTRr-Rywal_cds_all | Rywal 2019 reference leaf transcriptome (PacBio+Illumina), representative and alternative sequences | NIB | (n) | |||||
| annot_stCuSTr-R_cds_representatives.zip | Solanum_tuberosum-stCuSTRr-Rywal_cds_rep | Rywal 2019 reference leaf transcriptome (PacBio+Illumina), representative sequences | NIB | (n) | |||||
| annot_stCuSTr-R_tr_all.zip | Solanum_tuberosum-stCuSTRr-Rywal_transcript_all | Rywal 2019 reference leaf transcriptome (PacBio+Illumina), representative and alternative sequences | NIB | (n) | |||||
| annot_stCuSTr-R_tr_representatives.zip | Solanum_tuberosum-stCuSTRr-Rywal_transcript_rep | Rywal 2019 reference leaf transcriptome (PacBio+Illumina), representative sequences | NIB | (n) | |||||
| annot_stPanTr.aa.zip | Solanum_tuberosum-stPanTr_pep_all | Solanum tuberosum 2019 pan-transcriptome (from: stCuSTr_rep + ITAG_rep + PGSC_rep) | NIB | (p) | |||||
| annot_stPanTr.cds.zip | Solanum_tuberosum-stPanTr_cds_all | Solanum tuberosum 2019 pan-transcriptome (from: stCuSTr_rep + ITAG_rep + PGSC_rep) | NIB | (n) | |||||
| annot_stPanTr_rep.aa.zip | Solanum_tuberosum-stPanTr_pep_rep | Solanum tuberosum 2019 pan-transcriptome (from: stCuSTr_rep + ITAG_rep + PGSC_rep), representatives | NIB | (p) | |||||
| annot_stPanTr_rep.cds.zip | Solanum_tuberosum-stPanTr_cds_rep | Solanum tuberosum 2019 pan-transcriptome (from: stCuSTr_rep + ITAG_rep + PGSC_rep), representatives | NIB | (n) | |||||
