Selected Cell
Cell:
Value:
Oragnism_sample
array design
experiment_sample
data sheet
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Project | Sample ID | Sample | Sample | SEEK STRAIN ID | Treatment 1 | time after treatment | Cell culture ID | Cell culture Type | Cell culture | Cell culture | Sample | Sample | Sample | ||||||||||||||||||
name | (unique in whole BaCell, to use in all data sheets with measurements | lab_internal_number | Organism_part | concentration | lab_internal_number | Sampling date | Age_at_sampling_hours | comments | |||||||||||||||||||||||
Strain | glucose | Culture description | Culture_start_date | Creator | |||||||||||||||||||||||||||
value | SD | Unit | h | Date_at_sampling | Age_at_sampling_hours | Description | |||||||||||||||||||||||||
date | hour | ||||||||||||||||||||||||||||||
BaCell | sample 1 | sample 1 | whole cell | 45 | 7.148627101537788 | g/l | -6.68333 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 5 | ||||||||||||||||||
BaCell | sample 2 | sample 2 | whole cell | 45 | 6.820560170028125 | g/l | -5.68333 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 6 | ||||||||||||||||||
BaCell | sample 3 | sample 3 | whole cell | 45 | 6.499902192462649 | g/l | -4.68333 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 7 | ||||||||||||||||||
BaCell | sample 4 | sample 4 | whole cell | 45 | 5.7358432322795485 | g/l | -3.6833299999999998 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 8 | ||||||||||||||||||
BaCell | sample 5 | sample 5 | whole cell | 45 | 4.666975758290997 | g/l | -2.6833299999999998 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 9 | ||||||||||||||||||
BaCell | sample 6 | sample 6 | whole cell | 45 | 3.0201944509078364 | g/l | -1.6833299999999998 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 10 | ||||||||||||||||||
BaCell | sample 7 | sample 7 | whole cell | 45 | 1.7560740946620574 | g/l | -1.1833299999999998 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 10.5 | ||||||||||||||||||
BaCell | sample 8 | sample 8 | whole cell | 45 | 1.2176263811134527 | g/l | -0.6833299999999998 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 11 | ||||||||||||||||||
BaCell | sample 9 | sample 9 | whole cell | 45 | 0 | g/l | 2.9999999995311555E-6 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 11.683333 | ||||||||||||||||||
BaCell | sample 10 | sample 10 | whole cell | 45 | 0 | g/l | 0.5000029999999995 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 12.183333 | ||||||||||||||||||
BaCell | sample 11 | sample 11 | whole cell | 45 | 0 | g/l | 1.0000029999999995 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 12.683333 | ||||||||||||||||||
BaCell | sample 12 | sample 12 | whole cell | 45 | 0 | g/l | 1.5000029999999995 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 13.183333 | ||||||||||||||||||
BaCell | sample 13 | sample 13 | whole cell | 45 | 0 | g/l | 2.0000029999999995 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 13.683333 | ||||||||||||||||||
BaCell | sample 14 | sample 14 | whole cell | 45 | 0 | g/l | 2.5000029999999995 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 14.183333 | ||||||||||||||||||
BaCell | sample 15 | sample 15 | whole cell | 45 | 0 | g/l | 3.0000029999999995 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 14.683333 | ||||||||||||||||||
BaCell | sample 16 | sample 16 | whole cell | 45 | 0 | g/l | 3.5000029999999995 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 15.183333 | ||||||||||||||||||
BaCell | sample 17 | sample 17 | whole cell | 45 | 0 | g/l | 4.0000029999999995 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 15.683333 | ||||||||||||||||||
BaCell | sample 18 | sample 18 | whole cell | 45 | 0 | g/l | 5.000002999999998 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 16.683332999999998 | ||||||||||||||||||
BaCell | sample 19 | sample 19 | whole cell | 45 | 0 | g/l | 6.000002999999998 | Batchfermentation_Exp-Starv01 | batch | 2009-02-04T0:0:0+0000 | Praveen Kumar Sappa | 2009-02-04T0:0:0+0000 | 17.683332999999998 | ||||||||||||||||||
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Array design description | |||||||||
FORMAT | |||||||||
ARRAYBATCH | Simon Rasmussen, Henrik Bjørn Nielsen and Hanne Jarmer*. (2009) The transcriptionally active regions in the genome of Bacillus subtilis, Molecular Microbiology, 73, 1043–1057 | The array design specification consists of the description of the common features of the array as the whole, and the description of each array design elements (e.g., each spot). Following terminology used in MAGE, we distinguish between three levels of array design elements: feature - the location on the array, reporter - the nucleotide sequence present in a particular location on the array, and composite sequence - a set of reporters used collectively to measure an expression of a particular gene, exon, or splice-variant. The details that should be given of each of them are described below. | |||||||
ARRAYBATCHNAME | Tiling Array | * array design name | |||||||
ARRAYTYPE | Nimblegen | * platform type: in situ synthesized, spotted or other | |||||||
SPOTPARAMID | BaSysBio Bacillus subtilis T1385K array version 1’ | database ID | |||||||
NUMBERBLOCKSPERCHIP | * physical dimensions of array support (e.g. of slide) | ||||||||
NUMBERBLOCKSHORIZ | 43570 | * number of features on the array | |||||||
NUMBERBLOCKSVERTIC | |||||||||
NUMBERROWSINBLOCK | |||||||||
NUMBERCOLUMNSINBLOCK | date of production | ||||||||
SPOTTINGDATE | |||||||||
COMMENTS | something like surface and coating specification etc | ||||||||
PROVIDERID | Nimblegen | * availability (e.g., for commercial arrays) or production protocol for custom made arrays | |||||||
ARRAY | single array of certain array batch | ||||||||
ARRAYID | SOM03WCD =Time point(-5.40Hrs) | ||||||||
SOM03WCF =Time point(-4.40Hrs) | |||||||||
SOM03WCG =Time point(-3.40Hrs) | |||||||||
SOM03WCH =Time point(-2.40Hrs) | |||||||||
SOM03WCJ =Time point(-1.40Hrs) | |||||||||
SOM03WCK =Time point(-1.10Hrs) | |||||||||
SOM03WCL =Time point(-0.40Hrs) | |||||||||
SOM03WCM =Time point(0.0Hrs) | |||||||||
SOM03WCN =Time point(0.30Hrs) | |||||||||
SOMO42P3 =Time point(1.0Hrs) | |||||||||
SOMO42NZ =Time point(1.30Hrs) | |||||||||
SOMO42P0 =Time point(2.0Hrs) | |||||||||
SOMO43P1 =Time point(2.30Hrs) | |||||||||
SOMO43P2 =Time point(3.0Hrs) | |||||||||
SOMO45NV =Time point(3.30Hrs) | |||||||||
SOMO46NW =Time point(4.0Hrs) | |||||||||
SOMO47NX =Time point(5.0Hrs) | |||||||||
SOMO48NY =Time point(6.0Hrs) | |||||||||
ARRAYBATCHID | |||||||||
SUPPORTID | |||||||||
COMMENTARE | |||||||||
SLIDE_NB | |||||||||
REPORTER | oligo/sequence on array , related information, common for all arrays in one batch | ||||||||
RPROBEID | database ID | ||||||||
SPOTPARAMID | database ID, foreign key to arraybatch | ||||||||
TYPE | synthetic oligo-nucleotides | * the type of the reporter: synthetic oligo-nucleotides, PCR products, plasmids, colonies, other | |||||||
STRAND | single stranded | * single or double stranded | |||||||
SEQUENCE | |||||||||
LENGHT | Simon Rasmussen, Henrik Bjørn Nielsen and Hanne Jarmer*. (2009) The transcriptionally active regions in the genome of Bacillus subtilis, Molecular Microbiology, 73, 1043–1057 | * approximate lengths if exact sequence not known | |||||||
PROBETYPE | oligo, cDNA etc | ||||||||
ACC NUMBER | * gene name and links to appropriate databases (e.g., SWISS-PROT, or organism specific databases), if known and relevant | ||||||||
PROVIDER | |||||||||
PROVIDERID | o sequence accession number in DDBJ/EMBL/GenBank, if exists | ||||||||
ORGANISM | NCBI Accession number | ||||||||
CHROMOSOMENR | |||||||||
CHROM_BAND | |||||||||
SYMBOL | standartized name of gene | ||||||||
PLASMIDNR | |||||||||
SYMBOL | |||||||||
AMPLIFICATIONPROTOCOLID | database ID, foreign key to amplification protokol (separate) | ||||||||
PURIFICATIONPROTOCOLID | database ID, foreign key to purification protokol (separate) | ||||||||
PRODUCTIONDATE | |||||||||
DNAYIELD | amount of DNA on the spot | ||||||||
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HYBPROTOCOL | * quantity of labeled target used | ||||||||
- | * time, concentration, volume, temperature | ||||||||
- | * description of the hybridization instruments | ||||||||
- | * the solution (e.g., concentration of solutes), * wash procedure | ||||||||
- | |||||||||
COMMENTS | |||||||||
Measurement data | We distinguish between three levels of data processing - raw data (images), image quantitations and gene expression data matrix. Each hybridization has at least one image, each image has a corresponding image quantitation table, where a row represents an array design element and a column to a different quantitation types, such as mean or median pixel intensity. Several quantitation tables can be combined using data processing metrics to obtain the 'final' gene expression measurement table associated with the experiment. | ||||||||
* for each scan laboratory protocol for scanning, including scanning hardware and software, scan parameters, including laser power, spatial resolution, pixel space, PMT voltage; | |||||||||
* scanned images; | |||||||||
Image analysis and quantitation | |||||||||
NEW -"RESULTS OF AGILENT FEATURE EXTRACTION (tab delimited txt))" | |||||||||
NEW - "Normalisation method" & Data Type | Log2 intensity values for annotated genes were derived from the individual probe data by calculating the median of the probes located within the genomic coordinates of these genes. | ||||||||
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Name | Locus_tag | sample 2 | sample 3 | sample 4 | sample 5 | sample 6 | sample 7 | sample 8 | sample 9 | sample 10 | sample 11 | sample 12 | sample 13 | sample 14 | sample 15 | sample 16 | sample 17 | sample 18 | |
aadK | BSU26790 | 11.4216 | 11.1174 | 11.2075 | 10.8558 | 10.6948 | 10.8055 | 10.8546 | 10.7088 | 11.2363 | 10.6121 | 10.5616 | 10.2775 | 11.0767 | 10.642 | 10.8905 | 10.9004 | 10.0146 | |
aag | BSU38620 | 9.6661 | 9.3543 | 9.3149 | 9.2926 | 9.1712 | 9.1541 | 9.0909 | 9.2041 | 10.3638 | 9.1708 | 9.0326 | 8.8836 | 9.1067 | 8.8359 | 9.0816 | 8.8567 | 8.6061 | |
aapA | BSU27090 | 9.701 | 9.4667 | 9.446 | 9.0619 | 8.976 | 8.9406 | 8.9171 | 8.6109 | 8.1522 | 7.905 | 8.2832 | 8.3951 | 8.5718 | 8.2426 | 8.5877 | 8.4957 | 8.227 | |
abfA | BSU28720 | 7.7218 | 7.7885 | 7.6784 | 7.6559 | 7.6068 | 7.6465 | 7.4775 | 7.6344 | 10.0152 | 10.1442 | 10.2804 | 10.1372 | 10.4478 | 9.6011 | 9.7782 | 9.5915 | 8.7217 | |
abh | BSU14480 | 12.3569 | 12.76 | 13.0423 | 12.5025 | 12.6681 | 12.706 | 12.8845 | 12.5789 | 12.4924 | 11.9992 | 12.0075 | 11.8753 | 12.6986 | 12.6543 | 12.8044 | 12.7583 | 12.1001 | |
abnA | BSU28810 | 6.9371 | 7.1592 | 7.0185 | 7.1061 | 7.0289 | 6.8823 | 6.7235 | 7.3679 | 10.4162 | 10.8804 | 11.3051 | 11.31 | 12.1407 | 11.3845 | 11.623 | 11.4731 | 10.2524 | |
abnB | BSU39330 | 9.2652 | 9.1515 | 9.2989 | 9.3815 | 9.1798 | 9.0213 | 8.9428 | 10.1017 | 9.9542 | 10.0539 | 10.3366 | 10.7912 | 11.6348 | 11.3076 | 11.4424 | 11.2693 | 10.7067 | |
abrB | BSU00370 | 14.1329 | 13.9183 | 13.0688 | 12.378 | 12.227 | 12.4483 | 12.3541 | 12.0179 | 12.6472 | 10.9624 | 11.3133 | 11.1531 | 11.8858 | 10.9634 | 10.73 | 10.1372 | 9.1242 | |
accA | BSU29200 | 13.7982 | 13.765 | 13.627 | 13.3258 | 13.1236 | 13.3793 | 13.0341 | 12.9189 | 12.3765 | 12.3893 | 12.2782 | 12.2024 | 13.1659 | 12.7835 | 13.3213 | 13.385 | 12.9909 | |
accB | BSU24350 | 15.2766 | 15.0366 | 14.9506 | 14.7732 | 14.588 | 14.4049 | 14.5063 | 14.4553 | 12.9127 | 13.5789 | 13.0971 | 12.9513 | 13.9735 | 13.5519 | 13.8834 | 13.7219 | 13.065 | |
accC | BSU24340 | 15.0733 | 14.9781 | 14.8622 | 14.6804 | 14.564 | 14.4043 | 14.4171 | 14.3979 | 13.0224 | 13.4779 | 12.9578 | 12.8346 | 13.8522 | 13.4482 | 13.7082 | 13.5303 | 13.0148 | |
accD | BSU29210 | 14.9524 | 14.6549 | 14.6912 | 14.3223 | 14.282 | 14.0504 | 14.1205 | 14.0015 | 13.5137 | 13.3863 | 13.2799 | 13.3218 | 14.1112 | 13.8701 | 14.4933 | 14.6723 | 14.2325 | |
acdA | BSU37170 | 9.7585 | 9.4313 | 9.0729 | 8.9537 | 9.0189 | 9.2222 | 8.8013 | 9.1294 | 13.9795 | 10.3731 | 9.8916 | 9.3866 | 9.4927 | 9.3947 | 9.9313 | 10.2079 | 10.1457 | |
ackA | BSU29470 | 13.3137 | 13.168 | 13.1027 | 12.9508 | 12.7783 | 12.8946 | 12.5628 | 12.0945 | 9.8858 | 9.3801 | 9.0629 | 9.1071 | 9.7433 | 9.4931 | 9.819 | 10.0732 | 9.9582 | |
acoA | BSU08060 | 6.8056 | 7.0275 | 6.998 | 6.9982 | 6.9844 | 6.7034 | 6.6683 | 7.1106 | 16.382 | 16.4077 | 16.4334 | 15.3656 | 15.1046 | 14.7095 | 15.1401 | 14.9141 | 14.0753 | |
acoB | BSU08070 | 7.2065 | 7.2439 | 7.2599 | 7.1553 | 7.1839 | 6.9856 | 6.8542 | 7.2301 | 16.3043 | 16.4102 | 16.4559 | 15.6552 | 15.1786 | 14.739 | 15.2001 | 15.1988 | 14.1824 | |
acoC | BSU08080 | 7.4704 | 7.712 | 7.5515 | 7.5607 | 7.6095 | 7.4794 | 7.4964 | 7.5866 | 15.8752 | 16.078 | 16.2513 | 15.1594 | 14.9528 | 14.4116 | 14.894 | 14.6919 | 13.7629 | |
acoL | BSU08090 | 7.6903 | 7.808 | 7.7791 | 7.6604 | 7.7796 | 7.7893 | 7.602 | 7.702 | 15.9424 | 16.4086 | 16.439 | 15.2141 | 14.8222 | 14.4772 | 14.8772 | 14.8118 | 13.8061 | |
acoR | BSU08100 | 9.0804 | 8.8926 | 8.995 | 8.9553 | 9.1006 | 9.2602 | 8.9627 | 10.9335 | 12.1857 | 12.0909 | 12.1951 | 12.1275 | 12.7861 | 12.263 | 12.5399 | 12.2912 | 11.1911 | |
acpA | BSU15920 | 15.7981 | 16.1679 | 16.251 | 16.0079 | 15.6973 | 15.5308 | 15.7239 | 15.4368 | 14.2806 | 14.1554 | 13.5824 | 13.1843 | 13.9239 | 13.5997 | 13.667 | 13.7736 | 13.1087 | |
acpK | BSU17130 | 12.4705 | 12.2048 | 12.0745 | 11.8864 | 11.5595 | 11.509 | 11.1307 | 11.1741 | 9.4631 | 10.6087 | 10.3875 | 10.5178 | 11.4597 | 10.8678 | 11.2276 | 11.222 | 10.5621 | |
acpS | BSU04620 | 10.7039 | 10.7115 | 10.5909 | 10.497 | 10.5045 | 10.9529 | 11.191 | 10.9158 | 11.0813 | 10.5914 | 10.3998 | 10.1082 | 10.4608 | 9.7907 | 10.027 | 9.8255 | 9.3003 | |
acsA | BSU29680 | 12.608 | 12.2009 | 12.4065 | 12.2438 | 12.2886 | 12.4436 | 12.2816 | 13.0469 | 14.6185 | 14.2827 | 14.3515 | 14.1411 | 14.9924 | 14.4185 | 14.6834 | 14.496 | 13.9036 | |
acuA | BSU29690 | 12.334 | 11.7064 | 11.8428 | 11.8072 | 11.7786 | 11.9331 | 11.7754 | 12.6657 | 13.5046 | 13.6516 | 13.4961 | 13.3171 | 14.0182 | 13.2909 | 13.4831 | 13.2284 | 12.2489 | |
acuB | BSU29700 | 11.88 | 11.4381 | 11.5574 | 11.5355 | 11.6314 | 11.8196 | 11.7684 | 12.363 | 13.0781 | 13.0116 | 12.8171 | 12.4412 | 13.2916 | 12.6678 | 12.9104 | 12.5934 | 11.6307 | |
acuC | BSU29710 | 11.7865 | 11.3952 | 11.5482 | 11.3922 | 11.4381 | 11.6067 | 11.6663 | 12.1372 | 12.4773 | 12.7828 | 12.5266 | 12.3668 | 13.1234 | 12.5241 | 12.6526 | 12.3927 | 11.3489 | |
adaA | BSU01810 | 7.931 | 7.7301 | 7.6958 | 7.7289 | 7.6483 | 7.7045 | 7.5218 | 7.5067 | 8.5744 | 8.0464 | 8.4071 | 8.3759 | 8.4342 | 8.2357 | 8.4766 | 8.6 | 8.5777 | |
adaB | BSU01820 | 8.0137 | 7.8883 | 7.9003 | 7.8267 | 7.7884 | 7.7967 | 7.5875 | 7.6229 | 8.5691 | 7.9436 | 8.3805 | 8.3854 | 8.4354 | 7.9693 | 8.474 | 8.4174 | 8.2793 | |
adcA | BSU02850 | 13.4413 | 13.5829 | 13.9358 | 14.3155 | 15.0308 | 14.7962 | 15.385 | 15.4272 | 10.6404 | 10.345 | 9.7157 | 9.4183 | 9.7663 | 9.2245 | 9.2977 | 8.9454 | 8.7952 | |
adcB | BSU02870 | 11.0411 | 11.0788 | 11.0095 | 11.2185 | 11.7285 | 11.8861 | 12.21 | 12.2753 | 9.3011 | 8.8111 | 8.8113 | 9.0356 | 9.217 | 8.5767 | 8.892 | 8.8506 | 8.415 | |
adcC | BSU02860 | 11.1713 | 11.0324 | 11.1083 | 11.3767 | 11.9211 | 12.3385 | 12.4845 | 12.5101 | 9.3358 | 9.1324 | 9.13 | 9.0308 | 9.5871 | 8.7768 | 9.2015 | 8.9726 | 8.6602 | |
addA | BSU10630 | 12.3524 | 12.2148 | 12.0804 | 11.9182 | 11.8648 | 12.2501 | 12.2698 | 12.4241 | 12.756 | 12.2862 | 11.7349 | 11.1731 | 11.7943 | 11.0695 | 11.0881 | 10.798 | 10.1847 | |
addB | BSU10620 | 11.7609 | 11.6222 | 11.6677 | 11.4688 | 11.733 | 12.1624 | 12.4068 | 12.2963 | 12.2709 | 11.7601 | 11.1751 | 10.6331 | 11.2129 | 10.5773 | 10.6817 | 10.5909 | 9.8998 | |
adeC | BSU14520 | 12.0245 | 11.7603 | 11.6462 | 11.4586 | 11.3937 | 11.4877 | 11.1152 | 11.0586 | 8.5656 | 8.5645 | 8.6833 | 9.0387 | 9.6918 | 9.2778 | 9.75 | 9.7666 | 9.2546 | |
adhA | BSU27010 | 8.6137 | 8.497 | 8.3764 | 8.206 | 8.1916 | 8.3825 | 8.1646 | 8.1455 | 8.9537 | 8.6072 | 8.5664 | 8.5439 | 8.7481 | 8.2545 | 8.5497 | 8.4219 | 8.2455 | |
adhB | BSU26970 | 8.9462 | 8.1296 | 7.418 | 7.2186 | 7.0327 | 6.8402 | 6.8115 | 6.8522 | 7.7887 | 7.5429 | 7.7681 | 7.9536 | 7.5328 | 7.5116 | 8.0694 | 8.8358 | 9.9695 | |
adk | BSU01370 | 15.9285 | 16.1744 | 16.0403 | 15.9363 | 15.8517 | 15.3506 | 15.3179 | 15.4924 | 14.1017 | 13.5435 | 13.6472 | 13.4878 | 14.5513 | 13.8324 | 14.3077 | 14.3742 | 13.6129 | |
ahpC | BSU40090 | 15.8042 | 16.0883 | 16.0972 | 16.1908 | 16.2509 | 15.5553 | 16.3329 | 16.3568 | 15.0492 | 13.5986 | 13.231 | 13.4594 | 14.6811 | 14.5706 | 15.1925 | 15.3736 | 15.362 | |
ahpF | BSU40100 | 15.7862 | 15.6408 | 15.7847 | 15.5777 | 16.0238 | 15.6397 | 16.0399 | 16.1378 | 14.9289 | 13.6528 | 13.2076 | 13.3635 | 14.416 | 14.2723 | 14.8923 | 15.1425 | 15.0455 | |
ahrC | BSU24250 | 12.0816 | 11.7956 | 11.6258 | 11.4187 | 11.2895 | 11.5519 | 11.3183 | 11.1014 | 10.2674 | 10.1937 | 10.2309 | 10.2433 | 11.035 | 10.6909 | 11.1008 | 11.071 | 10.6287 | |
alaS | BSU27410 | 12.9479 | 12.7071 | 12.5166 | 12.4506 | 12.3469 | 12.4214 | 12.0126 | 12.171 | 10.6507 | 10.7597 | 10.3665 | 10.1645 | 10.9097 | 10.1521 | 10.4513 | 10.2256 | 9.6967 | |
albA | BSU37370 | 12.1598 | 11.9656 | 12.0762 | 11.9743 | 12.1076 | 12.2517 | 12.1818 | 12.1842 | 12.8685 | 12.5308 | 12.4761 | 12.1123 | 12.751 | 11.9541 | 12.1905 | 11.9876 | 11.2799 | |
albB | BSU37380 | 12.5083 | 12.1515 | 12.3314 | 12.3711 | 12.3623 | 12.5765 | 12.4091 | 12.4516 | 12.9457 | 12.4741 | 12.4202 | 12.1066 | 12.6954 | 11.9973 | 12.1322 | 12.119 | 11.2226 | |
albC | BSU37390 | 11.8242 | 11.6194 | 11.6629 | 11.4085 | 11.4588 | 11.6948 | 11.6052 | 11.5992 | 11.7688 | 11.326 | 11.3272 | 10.9501 | 11.5238 | 10.8913 | 11.2021 | 11.1048 | 10.3261 | |
albD | BSU37400 | 11.5331 | 11.3361 | 11.2456 | 11.1079 | 11.0976 | 11.2399 | 11.0229 | 11.0492 | 10.9523 | 10.7202 | 10.6477 | 10.3307 | 10.9007 | 10.1556 | 10.6022 | 10.5723 | 9.7018 | |
albE | BSU37410 | 10.8212 | 10.4498 | 10.4587 | 10.3742 | 10.1184 | 10.2088 | 10.2042 | 10.2427 | 10.557 | 10.2645 | 10.3396 | 10.1284 | 10.7056 | 9.9971 | 10.3719 | 10.2707 | 9.6245 | |
albF | BSU37420 | 10.0767 | 9.9114 | 9.8253 | 9.5844 | 9.4706 | 9.553 | 9.5337 | 9.5987 | 10.0541 | 9.8364 | 9.906 | 9.6781 | 10.28 | 9.7015 | 10.0249 | 9.9189 | 9.353 | |
albG | BSU37430 | 10.2216 | 9.8839 | 9.6587 | 9.5642 | 9.4328 | 9.1775 | 9.5581 | 9.5947 | 10.3863 | 10.1878 | 9.9215 | 9.6126 | 10.2414 | 9.6594 | 10.014 | 10.0072 | 9.3621 | |
ald | BSU31930 | 12.8647 | 12.5144 | 12.3711 | 11.9101 | 11.8093 | 12.0961 | 11.3238 | 11.1572 | 13.9686 | 11.3261 | 11.0995 | 11.0306 | 11.2173 | 10.5576 | 11.3446 | 11.7576 | 11.5881 | |
aldX | BSU39860 | 8.1831 | 8.2827 | 8.2625 | 7.9634 | 8.0146 | 7.9248 | 7.9273 | 7.7924 | 8.393 | 7.9538 | 8.1188 | 8.248 | 8.2655 | 7.9776 | 8.2364 | 8.0578 | 7.9557 | |
aldY | BSU38830 | 7.8925 | 7.81 | 7.7329 | 7.5297 | 7.3942 | 7.3512 | 7.4783 | 7.382 | 8.2855 | 7.7964 | 7.9015 | 7.961 | 7.8832 | 7.7627 | 8.3037 | 8.2502 | 8.3893 | |
alkA | BSU01800 | 10.3983 | 10.0226 | 10.0663 | 9.9192 | 9.8042 | 9.919 | 9.8068 | 9.7694 | 9.455 | 8.8712 | 9.2198 | 9.2897 | 9.9749 | 9.776 | 10.2608 | 10.7563 | 10.5851 | |
alrA | BSU04640 | 12.2026 | 11.938 | 11.8308 | 11.5277 | 11.5426 | 11.6077 | 11.4486 | 11.2682 | 9.8812 | 9.8212 | 9.6202 | 9.9575 | 10.7034 | 10.4074 | 10.9029 | 10.7916 | 10.4708 | |
alrB | BSU17640 | 8.596 | 8.3674 | 7.8386 | 7.4651 | 7.2786 | 7.0203 | 6.8739 | 6.9546 | 7.7433 | 7.3618 | 7.7857 | 8.0015 | 7.9997 | 8.2717 | 9.2152 | 9.6515 | 9.782 | |
alsD | BSU36000 | 10.6069 | 10.3064 | 10.2845 | 10.3887 | 10.7576 | 11.5818 | 10.9772 | 10.9107 | 9.9476 | 9.2551 | 9.0698 | 8.7851 | 8.9273 | 8.3881 | 8.5888 | 8.4477 | 8.4866 | |
alsR | BSU36020 | 10.5551 | 10.5513 | 10.5514 | 10.3093 | 10.3041 | 10.5118 | 10.4238 | 10.0592 | 9.7441 | 9.4011 | 9.3515 | 9.1335 | 9.6474 | 9.3154 | 9.6132 | 9.5891 | 9.2227 | |
alsS | BSU36010 | 10.7556 | 10.4515 | 10.5307 | 10.434 | 11.0424 | 11.6637 | 11.1974 | 11.0369 | 9.898 | 9.0995 | 8.8739 | 8.5679 | 8.574 | 7.9973 | 8.2513 | 8.2216 | 8.344 | |
alsT | BSU18120 | 11.7183 | 11.5519 | 11.2605 | 10.9865 | 10.8583 | 11.0375 | 10.9656 | 10.4243 | 8.2595 | 8.48 | 8.3804 | 8.6681 | 9.1178 | 9.0854 | 9.5204 | 9.4417 | 8.8897 | |
amhX | BSU03010 | 12.5245 | 12.1315 | 11.8118 | 11.4226 | 11.4613 | 11.9072 | 12.1424 | 11.7386 | 12.0006 | 12.3005 | 12.6414 | 12.6882 | 13.4472 | 12.8093 | 13.2385 | 13.0327 | 12.3697 | |
ampS | BSU14450 | 12.0316 | 11.715 | 11.7073 | 11.5479 | 11.479 | 11.485 | 11.1736 | 11.3757 | 9.7763 | 10.0441 | 9.7336 | 9.9167 | 10.6873 | 10.2779 | 10.4818 | 10.5663 | 10.179 | |
amtB | BSU36510 | 8.589 | 8.5633 | 8.6585 | 8.3919 | 10.0816 | 10.7104 | 10.6538 | 9.7495 | 9.6362 | 9.1813 | 9.0483 | 8.723 | 8.8885 | 8.1271 | 8.4032 | 8.2164 | 7.9834 | |
amyC | BSU30290 | 9.6157 | 9.2302 | 9.1372 | 8.9445 | 9.036 | 9.0713 | 8.9584 | 9.7191 | 12.3342 | 11.382 | 11.5325 | 11.3745 | 12.0245 | 11.2461 | 11.3842 | 11.1722 | 9.9017 | |
amyD | BSU30280 | 9.1265 | 8.7291 | 8.7029 | 8.6245 | 8.6941 | 8.71 | 8.4974 | 9.5288 | 11.7731 | 10.882 | 10.9268 | 10.8974 | 11.5987 | 10.6433 | 10.8883 | 10.6454 | 9.3117 | |
amyE | BSU03040 | 9.4649 | 9.1642 | 9.0943 | 9.1146 | 9.1271 | 9.2805 | 9.0198 | 10.1464 | 11.0616 | 10.5645 | 10.5955 | 10.535 | 11.2445 | 10.7932 | 11.1847 | 11.0842 | 10.32 | |
amyX | BSU29930 | 11.43 | 11.3118 | 11.0161 | 10.8664 | 10.5712 | 10.7169 | 10.4872 | 10.768 | 9.9305 | 10.0249 | 9.6034 | 9.4587 | 10.103 | 9.6308 | 9.8196 | 9.6099 | 9.1386 | |
ansA | BSU23580 | 10.7589 | 10.4274 | 10.285 | 10.2497 | 10.1652 | 10.4826 | 10.2662 | 10.2653 | 9.7664 | 9.6997 | 9.5921 | 9.4851 | 10.1365 | 9.6238 | 9.9282 | 9.9123 | 9.4943 | |
ansB | BSU23570 | 10.586 | 10.3614 | 10.2187 | 10.1915 | 10.1971 | 10.4687 | 10.2312 | 10.4269 | 10.0089 | 9.7888 | 9.5935 | 9.5116 | 10.1707 | 9.5266 | 9.9043 | 9.9282 | 9.3282 | |
ansR | BSU23590 | 10.4323 | 10.3088 | 10.1554 | 9.8544 | 10.0403 | 9.9718 | 10.3218 | 10.0098 | 9.3662 | 9.0274 | 9.2166 | 9.2183 | 9.8206 | 9.3047 | 9.8324 | 9.5217 | 9.1538 | |
ansZ | BSU02690 | 8.5048 | 8.2778 | 8.2605 | 8.1712 | 8.2952 | 8.2294 | 8.4533 | 8.2229 | 8.1747 | 7.8807 | 8.0051 | 8.1745 | 8.0373 | 7.7778 | 8.2882 | 8.2751 | 8.438 | |
antE | BSU25220 | 8.9464 | 8.9962 | 8.7945 | 8.5582 | 8.8705 | 8.7091 | 8.6241 | 8.679 | 10.3541 | 9.8843 | 10.3121 | 10.2759 | 10.173 | 10.2428 | 11.0318 | 10.6067 | 10.6528 | |
appA | BSU11381 | 15.2886 | 15.0952 | 14.8801 | 14.7683 | 14.4562 | 14.1481 | 14.2663 | 14.3548 | 13.2206 | 14.432 | 14.9777 | 15.1668 | 15.6309 | 15.462 | 15.8481 | 15.8695 | 15.492 | |
appA | BSU11382 | 14.8659 | 14.5506 | 14.5031 | 14.1869 | 14.0086 | 13.9072 | 13.7787 | 14.0348 | 12.8128 | 14.014 | 14.5237 | 14.7107 | 15.3416 | 15.1819 | 15.5368 | 15.4014 | 15.1927 | |
appB | BSU11390 | 13.5863 | 13.2462 | 12.9115 | 12.6199 | 12.3951 | 12.3131 | 12.2889 | 12.2604 | 10.5719 | 11.7806 | 12.2167 | 12.3566 | 13.3409 | 12.7907 | 13.3211 | 13.3447 | 12.7185 | |
appC | BSU11400 | 13.4866 | 13.1644 | 12.9051 | 12.6055 | 12.2891 | 12.2361 | 12.1201 | 12.2251 | 10.681 | 11.6222 | 12.046 | 12.2551 | 13.1609 | 12.5894 | 13.135 | 13.3266 | 12.6052 | |
appD | BSU11360 | 13.3668 | 12.8622 | 12.8705 | 12.7759 | 12.5902 | 12.5305 | 12.4652 | 12.5167 | 11.6428 | 12.8094 | 13.3798 | 13.6856 | 14.6299 | 14.2346 | 14.5973 | 14.6928 | 14.2659 | |
appF | BSU11370 | 13.7007 | 13.2949 | 13.3244 | 13.0567 | 12.8321 | 12.6726 | 12.7883 | 12.7132 | 11.6391 | 12.9424 | 13.3537 | 13.6599 | 14.6891 | 14.2132 | 14.7288 | 14.6583 | 14.4387 | |
aprE | BSU10300 | 10.8168 | 10.1529 | 10.0113 | 9.9683 | 9.8046 | 9.9869 | 9.9612 | 10.1174 | 11.3527 | 10.4358 | 10.843 | 10.8076 | 11.8076 | 11.5232 | 12.3377 | 12.4763 | 12.1923 | |
aprX | BSU17260 | 7.9943 | 7.9491 | 7.8609 | 7.654 | 7.5515 | 7.4637 | 7.4701 | 7.4397 | 8.0695 | 7.758 | 7.9777 | 8.2658 | 8.2491 | 7.9637 | 8.2437 | 8.1776 | 8.0093 | |
apt | BSU27610 | 13.4254 | 13.3247 | 13.1191 | 12.6887 | 12.4637 | 12.6113 | 12.6407 | 12.23 | 11.343 | 11.2096 | 10.7394 | 10.5894 | 11.4722 | 11.1363 | 11.5687 | 11.5431 | 11.0444 | |
araA | BSU28800 | 7.702 | 7.7314 | 7.7677 | 7.7822 | 7.7154 | 7.7843 | 7.642 | 8.0296 | 10.456 | 10.5406 | 10.8898 | 10.9448 | 11.4014 | 10.6911 | 10.8699 | 10.4953 | 9.5112 | |
araB | BSU28790 | 7.5298 | 7.6087 | 7.5049 | 7.5614 | 7.6261 | 7.525 | 7.1991 | 7.9217 | 10.301 | 10.4772 | 10.7344 | 10.5906 | 11.1335 | 10.2907 | 10.5443 | 10.1389 | 9.2108 | |
araD | BSU28780 | 7.4837 | 7.6077 | 7.5251 | 7.6024 | 7.5447 | 7.4609 | 7.2179 | 7.7945 | 10.4183 | 10.5573 | 10.6172 | 10.6546 | 11.098 | 10.1872 | 10.497 | 10.1276 | 9.1675 | |
araE | BSU33960 | 7.0427 | 7.248 | 7.1827 | 7.2293 | 7.5736 | 8.2558 | 8.4393 | 7.9789 | 10.2563 | 9.9432 | 9.6458 | 9.5021 | 9.8243 | 9.216 | 9.3681 | 9.0397 | 8.3902 | |
araL | BSU28770 | 7.648 | 7.5012 | 7.4865 | 7.4185 | 7.447 | 7.5051 | 7.1069 | 7.5205 | 10.3005 | 10.5403 | 10.6506 | 10.5786 | 10.9207 | 9.9641 | 10.3547 | 10.1384 | 9.1501 | |
araM | BSU28760 | 7.5516 | 7.5819 | 7.5328 | 7.4919 | 7.5473 | 7.484 | 7.2381 | 7.4938 | 10.5039 | 10.6458 | 10.7729 | 10.482 | 10.967 | 10.034 | 10.2546 | 10.016 | 9.1505 | |
araN | BSU28750 | 7.9928 | 7.8462 | 7.7365 | 7.805 | 7.6979 | 7.7288 | 7.4643 | 7.6467 | 10.3964 | 10.4888 | 10.6131 | 10.4272 | 10.7404 | 9.9464 | 10.2114 | 9.8579 | 8.9684 | |
araP | BSU28740 | 7.8117 | 7.8536 | 7.7282 | 7.7043 | 7.6765 | 7.7128 | 7.4882 | 7.6738 | 10.1818 | 10.1866 | 10.1622 | 9.9552 | 10.245 | 9.4839 | 9.7142 | 9.5488 | 8.5681 | |
araQ | BSU28730 | 7.6672 | 7.6802 | 7.5754 | 7.4973 | 7.5204 | 7.4526 | 7.2564 | 7.5628 | 10.0798 | 10.0103 | 10.0836 | 9.7444 | 10.0795 | 9.1783 | 9.5337 | 9.4275 | 8.4853 | |
araR | BSU33970 | 10.9837 | 10.8834 | 10.6901 | 10.507 | 10.349 | 10.4092 | 10.3865 | 10.3853 | 9.4909 | 9.5684 | 9.1925 | 9.3373 | 9.8694 | 9.4966 | 9.7898 | 9.7464 | 9.3688 | |
arfM | BSU37290 | 6.9585 | 7.0517 | 6.9532 | 7.0282 | 6.9734 | 6.7353 | 6.5041 | 6.5315 | 7.5614 | 7.3519 | 7.7195 | 7.8977 | 7.5083 | 7.3403 | 7.508 | 7.2651 | 7.4186 | |
argB | BSU11210 | 14.1155 | 13.7101 | 13.5542 | 13.4373 | 14.0301 | 14.3261 | 14.648 | 14.4194 | 14.6231 | 14.1526 | 13.7433 | 13.1847 | 14.4918 | 14.0305 | 14.5767 | 14.593 | 13.841 | |
argC | BSU11190 | 13.5673 | 13.0662 | 13.0904 | 13.021 | 13.7954 | 14.1043 | 14.2952 | 14.056 | 12.6487 | 11.9671 | 11.1928 | 11.2866 | 13.795 | 13.5648 | 14.1244 | 14.1826 | 13.3322 | |
argD | BSU11220 | 13.6691 | 13.3868 | 13.3482 | 13.0124 | 13.6502 | 14.0715 | 14.4363 | 14.3027 | 14.8802 | 14.3836 | 14.058 | 13.0942 | 14.4934 | 13.8568 | 14.4565 | 14.3734 | 13.7169 | |
argF | BSU11250 | 14.3109 | 13.9854 | 13.656 | 13.4555 | 13.5601 | 14.0212 | 14.5974 | 14.6302 | 15.771 | 15.4433 | 15.1578 | 14.4871 | 15.1442 | 14.757 | 15.1098 | 15.077 | 14.3681 | |
argG | BSU29450 | 14.2893 | 13.7752 | 13.8096 | 13.6445 | 14.0265 | 14.2005 | 14.3444 | 13.78 | 13.3645 | 12.7888 | 11.7466 | 11.6251 | 14.2163 | 14.0683 | 14.3876 | 14.3837 | 13.6771 | |
argH | BSU29440 | 14.5399 | 14.2348 | 14.0863 | 13.844 | 14.1402 | 14.3823 | 14.5655 | 14.1212 | 14.1707 | 13.8934 | 12.8988 | 12.5519 | 14.6471 | 14.3536 | 14.7361 | 14.8594 | 14.0826 | |
argI | BSU40320 | 11.0971 | 10.9908 | 10.8525 | 10.6707 | 10.5044 | 10.8993 | 10.3459 | 10.4921 | 11.3691 | 12.4415 | 13.7454 | 13.5846 | 12.8202 | 11.1794 | 11.2032 | 11.2227 | 10.4686 | |
argJ | BSU11200 | 13.8849 | 13.4599 | 13.4264 | 13.3338 | 13.7448 | 14.1854 | 14.5043 | 14.1692 | 13.9167 | 13.2601 | 12.9766 | 12.5601 | 14.1547 | 13.9503 | 14.4565 | 14.385 | 13.818 | |
argS | BSU37330 | 13.4337 | 13.1328 | 12.986 | 12.807 | 12.6752 | 12.6469 | 12.5286 | 12.4794 | 11.7802 | 11.6415 | 11.42 | 11.3539 | 12.1991 | 11.9388 | 12.0723 | 12.113 | 11.4272 |