Selected Cell
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Value:
ReadMe
LHY original data
LHY mean and SE for BioDare
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| This is one of many sheets from Andrew Millar's reworking (Nov-Dec 2010) of Aurora PinasFenandez's data (2009-2010). The readme is for all sheets. | |||||||||
| Harvesting - ZT0 and ZT12 were harvested in a darkroom. ZT0 plants were taken before lights came on in the cabinets; ZT12 immediately after lights went out. Harvesting took 3-4 mins for all genotypes, always in same order. | |||||||||
| Calibration standard curves were different for Col and Ws samples - so levels CANNOT be compared across accessions, but relative levels can (Andrew thinks?) | |||||||||
| Aurora had normalised all to a single timepoint in WT | |||||||||
| This copy removes that normalisation… greyed out columns | |||||||||
| Also makes multiple versions of final data for matching to the Pokhilko 2010 model in SBSI | |||||||||
| Aurora's quality control also removes samples with differing GOI measures BEFORE ratioing to ACT (shaded in red) | |||||||||
| would be better to do so AFTER ratioing… still to update, exceppt some manual edits to 7-9- data | |||||||||
| AJM manually edited the 14h to 18h timepoints in the prr7-9- mutant, as many values were omitted when the ratio's looked reasonably close among reps | |||||||||
| For toc1-9, ignore LHY data, much lower than CCA1 in first 4 timepoints; LUX ditto | |||||||||
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| rep3 | 18 | 10.4788354815704 | 48.6392326453487 | 0.21543998356175703 | 12.14853767097124 | |||||||||||||||
| rep1 | 20 | 26.2716538394914 | 16.0125053859651 | 1.6406960189077224 | 92.51791177657316 | 1.5134185718293378 | 0.38874847431819204 | 0.27488668236631797 | ||||||||||||
| rep2 | 20 | 8.83682376725664 | 7.13491823863167 | 1.2385318894630193 | 69.84010612648214 | |||||||||||||||
| rep3 | 20 | 10.4805852803464 | 5.86062432896019 | 1.7883052541956561 | 100.8415122792843 | |||||||||||||||
| rep1 | 22 | 0.230560400962573 | 0.0247818924892322 | 9.303583294244058 | 524.6237502276055 | 8.930208245685336 | 3.578106245505235 | 2.065820604031529 | ||||||||||||
| rep2 | 22 | 0.285261596709967 | 0.0231788341635861 | 12.306986395291286 | 693.9839363498111 | |||||||||||||||
| rep3 | 22 | 0.113053040201508 | 0.0218246793063751 | 5.180055047520659 | 292.10034665858666 | |||||||||||||||
| rep1 | 24 | 0.0959742455114176 | 0.00200392248419757 | 47.89319261011662 | 2700.669787418072 | 8.250623428238336 | 0.7357113323639839 | 0.5202264721103629 | ||||||||||||
| rep2 | 24 | 232.97591869747 | 26.5625248800812 | 8.770849900348699 | 494.5832183016136 | |||||||||||||||
| rep3 | 24 | 246.600016408838 | 31.9000457296511 | 7.730396956127973 | 435.9126708072804 | |||||||||||||||
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| This is one of many sheets from Andrew Millar's reworking (Nov-Dec 2010) of Aurora PinasFenandez's data (2009-2010). The readme is for all sheets. | ||||||||||
| Harvesting - ZT0 and ZT12 were harvested in a darkroom. ZT0 plants were taken before lights came on in the cabinets; ZT12 immediately after lights went out. Harvesting took 3-4 mins for all genotypes, always in same order. | ||||||||||
| Calibration standard curves were different for Col and Ws samples - so levels CANNOT be compared across accessions, but relative levels can (Andrew thinks?) | ||||||||||
| AJM manually edited the 14h to 18h timepoints in the prr7-9- mutant, as many values were omitted when the ratio's looked reasonably close among reps | ||||||||||
| For toc1-9, ignore LHY data, much lower than CCA1 in first 4 timepoints; LUX ditto | ||||||||||
| Mean | SE | |||||||||
| Time | WS-2 | toc1-9 | gi-11 | Col-4 | prr7/9 | WS-2 | toc1-9 | gi-11 | Col-4 | prr7/9 |
| 0 | 4.631160493784372 | 0.6514320276726221 | 1.609260049424785 | 8.120267540288646 | 3.9488868530481147 | 1.050215241974152 | 0.18289258912058556 | 0.14588895025669146 | 0.10966221997972317 | 0.22229499791061988 |
| 2 | 1.8950559588403362 | 0.0672762043457649 | 1.5237783694931526 | 5.296323062516135 | 2.302288362180502 | 0.5496823878886727 | 0.008221288037759112 | 0.1473272091071293 | 0.955710766072986 | 0.03763090164466442 |
| 4 | 0.3010540455877197 | 0.07340015055508498 | 0.4566242790513498 | 1.0532001529390247 | 1.4033388077238915 | 0.0289287247343889 | 0.009279079236991417 | 0.07739795165598891 | 0.09882679475427783 | 0.029671486146926603 |
| 6 | 0.04606019336454031 | 0.07326787628515338 | 0.3001885733618888 | 1.1715953299927222 | 0.007478250397870409 | 0.0017650600135167213 | 0.048284933123334074 | 0.051034723272266456 | ||
| 8 | 0.015348707551106408 | 0.051657401779550416 | 0.022948538635409046 | 0.048296246328774904 | 1.1514253101966572 | 0.0028597088907186988 | 0.013112539894701267 | 0.0014933552710307452 | 0.006981746933242767 | 0.09082789653160214 |
| 10 | 0.006243423509607333 | 0.026482956548317456 | 0.013498187188249022 | 0.015031574166529768 | 0.9857150765655758 | 3.2549730765303044E-4 | 7.978520022712282E-4 | 3.5585216870341434E-5 | 0.0010941795137301826 | 0.05967417177863843 |
| 12 | 0.004997095291601669 | 0.014501845124493427 | 0.009851071596153331 | 0.016505389562942556 | 0.21007223006914066 | 0.0014454244284333986 | 0.00405939947828125 | 0.0023227249575557634 | 7.933355381422376E-4 | 0.03723929286855507 |
| 14 | 0.0024388292135717263 | 0.003814454775239107 | 0.02901617103357374 | 0.012807371636550319 | 0.056782917898465735 | 9.287697145538574E-5 | 0.0010453873449936064 | 0.008990378276165266 | 0.002356801157083524 | 0.00815624792411531 |
| 16 | 0.06458061290082012 | 0.01577924655222094 | 0.04510496555622975 | 0.04395823060368467 | 0.0040161051661944175 | 0.001252218931522611 | 0.007190445395783833 | 0.0035226540689816603 | ||
| 18 | 0.04238813010100739 | 0.5739433106477756 | 0.056676081034892134 | 0.4182506852817565 | 1.1393922419489528 | 0.003804008381865387 | 0.1785686234162341 | 0.004749017064173374 | 5.814584979589685E-4 | 0.731736188551206 |
| 20 | 0.181389891763515 | 1.6013707841397113 | 0.29162764244467254 | 2.073328158694886 | 1.5134185718293378 | 0.010749001681596482 | 0.04426731068760343 | 0.0646052149993204 | 0.20636320223559051 | 0.27488668236631797 |
| 22 | 1.056063792336563 | 0.4827831065299017 | 5.676149574577184 | 8.930208245685336 | 0.09165342239818909 | 0.047238299373526804 | 0.4584585701920375 | 2.065820604031529 | ||
| 24 | 8.1084653240152 | 8.250623428238336 | 0.6456935341744887 | 0.5202264721103629 | ||||||
