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| UID | Name | Parent | Mutation | Species | CellLine | Protocol | Source | Type | GrowthConditions | Media | Passages | Scientist | RepositoryLink | BioSampleAccession | EthicsApproval | AssayType | StorageType | Catalog# | Link_Catalog# |
| CEL-250605SHO-1 | MCRIi019-A-WT | WildType | Homo Sapiens | MCRIi019-A | https://fairdomhub.org/sops/832 | ATCC Fibroblast line 1502 | Induced Pluripotent Stem Cells (iPSC) | Feeder-free on Matrigel-coated 6-well plates | Essential 8 (E8) medium | 1:6 every 3–4 days using 0.5 mM EDTA in PBS | Kathryn Yammine | https://hpscreg.eu/cell-line/MCRIi019-A | https://www.ebi.ac.uk/biosamples/samples/SAMEA117742037 | HREC #33118, Royal Children’s Hospital, Victoria, Australia | Frozen | CRL-1502 | https://www.atcc.org/products/crl-1502 | ||
| CEL-250605SHO-2 | MCRIi019-A-6 | CEL-250605SHO-1 | CRISPR/Cas9 editing to introduce COL2A1 c.2155C>T (p.Arg719Cys) | MCRIi019-A | https://fairdomhub.org/sops/832 | Induced Pluripotent Stem Cells (iPSC) | Feeder-free on Matrigel-coated 6-well plates | Essential 8 (E8) medium | 1:6 every 3–4 days using 0.5 mM EDTA in PBS | Kathryn Yammine | https://hpscreg.eu/cell-line/MCRIi019-A | https://www.ebi.ac.uk/biosamples/samples/SAMEA117742037 | HREC #33118, Royal Children’s Hospital, Victoria, Australia | Frozen | CRL-1502 | https://www.atcc.org/products/crl-1502 | |||
| CEL-250605SHO-3 | 403_10-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-4 | 403_11-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-5 | 403_12-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-6 | 403_13-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-7 | 403_14-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-8 | 403_1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-9 | 403_2-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-10 | 403_3-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-11 | 403_4-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-12 | 403_5-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-13 | 403_6-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-14 | 403_7-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-15 | 403_8-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-16 | 403_9-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-17 | 403_15-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-18 | 403_16-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-19 | 403_17-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-20 | 403_18-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-21 | 171_1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-22 | 171_2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-23 | 171_3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-24 | 171_4-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-25 | 171_5-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-26 | 171_6-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-27 | 171_7-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-28 | 171_8-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-29 | 171_9-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-30 | 755_1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-31 | 755_2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-32 | 755_3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-33 | R-1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-34 | R-3-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-35 | R1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-36 | R2-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-37 | WT-1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-38 | R(080302021)-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-39 | WT-1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-40 | WT-2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-41 | WT-3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-42 | WT(08302021)-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-43 | R719C_1-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-44 | R719C_1-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-45 | R719C_2-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-46 | R719C_2-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-47 | R719C_3-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-48 | R719C_3-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-49 | R719C_1-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-50 | R719C_1-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-51 | R719C_1-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-52 | R719C_1-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-53 | R719C_2-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-54 | R719C_2-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-55 | R719C_2-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-56 | R719C_2-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-57 | R719C_3-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-58 | R719C_3-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-59 | R719C_3-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-60 | R719C_3-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250606SHO-1 | HT-1080 | Homo Sapiens | https://fairdomhub.org/sops/835 | ATCC | Human Fibrosarcoma Cell line | Kathryn Yammine | Proteomics | Vapor phase of liquid nitrogen | ccl-121 | https://www.atcc.org/products/ccl-121 | |||||||||
| CEL-250606SHO-2 | HT-1080 transfected with WT | CEL-250606SHO-1; CEL-250605SHO-1 | https://fairdomhub.org/sops/835 | Transfected Cell Line | Kathryn Yammine | Proteomics | |||||||||||||
| CEL-250606SHO-3 | HT-1080 transfected with Arg719Cys | CEL-250606SHO-1; CEL-250605SHO-2 | https://fairdomhub.org/sops/835 | Transfected Cell Line | Kathryn Yammine | Proteomics | |||||||||||||
| CEL-250606SHO-4 | Collagen extracted from chondronoids of both WT and Arg719Cys | CEL-250605SHO-1; CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | Collagen | Kathryn Yammine | SDS-Page | |||||||||||||
| CEL-250606SHO-5 | 405A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-6 | 405B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-7 | 405C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-8 | 452A | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-9 | 452B | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-10 | 452C | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-11 | 688A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-12 | 688B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-13 | 688C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-14 | 751A | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-15 | 751B | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-16 | 751C | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-17 | 985A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-18 | 985B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-19 | 985C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL |
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| UID | File_PrimaryData | Checksum_PrimaryData | Link_PrimaryData | Parent | Scientist | Channels | Wavelengths | FluorescentLabels | Type | Notes | Protocol | Instrument | Software |
| D.IMG-250605SHO-1 | 403_10_w1Conf 561 CY3.TIF | 3461f9d49a9f091449fc9bc6e95111f0 | https://omero.mit.edu/webclient/img_detail/25465/?dataset=1951 | CEL-250605SHO-3 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-2 | 403_10_w2Conf 405 DAPI.TIF | fa75d0c96133ce43a0aba61260631659 | https://omero.mit.edu/webclient/img_detail/25465/?dataset=1951 | CEL-250605SHO-3 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-3 | 403_10_w3Conf 488 GFP.TIF | 934a2085c19a45c3170f4c512064eebf | https://omero.mit.edu/webclient/img_detail/25465/?dataset=1951 | CEL-250605SHO-3 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-4 | 403_11_w1Conf 561 CY3.TIF | 55f96c3049e887ac18dc96aff6ea15f1 | https://omero.mit.edu/webclient/img_detail/25464/?dataset=1951 | CEL-250605SHO-4 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-5 | 403_11_w2Conf 405 DAPI.TIF | 89a8de6950e80d37fd57abb5b2ae6e4b | https://omero.mit.edu/webclient/img_detail/25464/?dataset=1951 | CEL-250605SHO-4 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-6 | 403_11_w3Conf 488 GFP.TIF | 8e8a5a705f642557f073822dc0f4edbf | https://omero.mit.edu/webclient/img_detail/25464/?dataset=1951 | CEL-250605SHO-4 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-7 | 403_12_w1Conf 561 CY3.TIF | 703a66fe3f2c0c25ef020e844fb0d800 | https://omero.mit.edu/webclient/img_detail/25468/?dataset=1951 | CEL-250605SHO-5 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-8 | 403_12_w2Conf 405 DAPI.TIF | 4c6139b9010e43298ab956a062daaa44 | https://omero.mit.edu/webclient/img_detail/25468/?dataset=1951 | CEL-250605SHO-5 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-9 | 403_12_w3Conf 488 GFP.TIF | f44ab9e33294fc23cd1835667ecc9bc6 | https://omero.mit.edu/webclient/img_detail/25468/?dataset=1951 | CEL-250605SHO-5 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-10 | 403_13_w1Conf 561 CY3.TIF | b81223e84d7028e08d4b837816d9b73c | https://omero.mit.edu/webclient/img_detail/25480/?dataset=1951 | CEL-250605SHO-6 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-11 | 403_13_w2Conf 405 DAPI.TIF | 847d58158cf172158b25a29d01e62dac | https://omero.mit.edu/webclient/img_detail/25480/?dataset=1951 | CEL-250605SHO-6 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-12 | 403_13_w3Conf 488 GFP.TIF | 9833963a0381a40986714a502a8a567a | https://omero.mit.edu/webclient/img_detail/25480/?dataset=1951 | CEL-250605SHO-6 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-13 | 403_14_w1Conf 561 CY3.TIF | 23922561f44d8e9949db3fcf4a317734 | https://omero.mit.edu/webclient/img_detail/25481/?dataset=1951 | CEL-250605SHO-7 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-14 | 403_14_w2Conf 405 DAPI.TIF | 370214375ead425ef373a468373c52f9 | https://omero.mit.edu/webclient/img_detail/25481/?dataset=1951 | CEL-250605SHO-7 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-15 | 403_14_w3Conf 488 GFP.TIF | b0d26d58332b9f5b94cd5c49cb7e16b7 | https://omero.mit.edu/webclient/img_detail/25481/?dataset=1951 | CEL-250605SHO-7 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-16 | 403_1_w1Conf 561 CY3.TIF | 1c77bd060ba3b56f04fbaf70a362e043 | https://omero.mit.edu/webclient/img_detail/25476/?dataset=1951 | CEL-250605SHO-8 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-17 | 403_1_w2Conf 405 DAPI.TIF | b0a93395417cc43f0c61da3fe1263913 | https://omero.mit.edu/webclient/img_detail/25476/?dataset=1951 | CEL-250605SHO-8 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-18 | 403_1_w3Conf 488 GFP.TIF | 9896bbaa5c02a46d1b487dbe8d589210 | https://omero.mit.edu/webclient/img_detail/25476/?dataset=1951 | CEL-250605SHO-8 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-19 | 403_2_w1Conf 561 CY3.TIF | 4abd467b173ce3c3bb3f44496cb43366 | https://omero.mit.edu/webclient/img_detail/25474/?dataset=1951 | CEL-250605SHO-9 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-20 | 403_2_w2Conf 405 DAPI.TIF | a72a4ffc8e9f3342133c909a7d1917c3 | https://omero.mit.edu/webclient/img_detail/25474/?dataset=1951 | CEL-250605SHO-9 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-21 | 403_2_w3Conf 488 GFP.TIF | 566814f6aa0f349089345e01579e85b8 | https://omero.mit.edu/webclient/img_detail/25474/?dataset=1951 | CEL-250605SHO-9 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-22 | 403_3_w1Conf 561 CY3.TIF | c28354619ae52374e091f5e10d443fb6 | https://omero.mit.edu/webclient/img_detail/25478/?dataset=1951 | CEL-250605SHO-10 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-23 | 403_3_w2Conf 405 DAPI.TIF | 83f554e9ddd9d3a969b4f668a61f3c45 | https://omero.mit.edu/webclient/img_detail/25478/?dataset=1951 | CEL-250605SHO-10 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-24 | 403_3_w3Conf 488 GFP.TIF | 1099be3f68595441082fd9f19de81536 | https://omero.mit.edu/webclient/img_detail/25478/?dataset=1951 | CEL-250605SHO-10 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-25 | 403_4_w1Conf 561 CY3.TIF | 5513a5baba3698dfe32fb3624d5343d5 | https://omero.mit.edu/webclient/img_detail/25470/?dataset=1951 | CEL-250605SHO-11 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-26 | 403_4_w2Conf 405 DAPI.TIF | 719c0a36ab2bca949abcfed68af13ea3 | https://omero.mit.edu/webclient/img_detail/25470/?dataset=1951 | CEL-250605SHO-11 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-27 | 403_4_w3Conf 488 GFP.TIF | d2924fd26c5d979e2e0a0db37384941d | https://omero.mit.edu/webclient/img_detail/25470/?dataset=1951 | CEL-250605SHO-11 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-28 | 403_5_w1Conf 561 CY3.TIF | 3790d04ca1d6159dbb9451519e064f8d | https://omero.mit.edu/webclient/img_detail/25469/?dataset=1951 | CEL-250605SHO-12 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-29 | 403_5_w2Conf 405 DAPI.TIF | 06e57d04402e928ace48a322c4deb7fd | https://omero.mit.edu/webclient/img_detail/25469/?dataset=1951 | CEL-250605SHO-12 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-30 | 403_5_w3Conf 488 GFP.TIF | 8601d40b8592b77c1a4d1af4e28c62e5 | https://omero.mit.edu/webclient/img_detail/25469/?dataset=1951 | CEL-250605SHO-12 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-31 | 403_6_w1Conf 561 CY3.TIF | 1f873025fb605271b9519b3961289646 | https://omero.mit.edu/webclient/img_detail/25471/?dataset=1951 | CEL-250605SHO-13 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-32 | 403_6_w2Conf 405 DAPI.TIF | f0e10c615cd69dbffd81c533ecacfa25 | https://omero.mit.edu/webclient/img_detail/25471/?dataset=1951 | CEL-250605SHO-13 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-33 | 403_6_w3Conf 488 GFP.TIF | a9e778689c05631a1fe82d625dd5bed9 | https://omero.mit.edu/webclient/img_detail/25471/?dataset=1951 | CEL-250605SHO-13 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-34 | 403_7_w1Conf 561 CY3.TIF | 8c6a497e3a96d5f6aa3390eee07cd10f | https://omero.mit.edu/webclient/img_detail/25466/?dataset=1951 | CEL-250605SHO-14 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-35 | 403_7_w2Conf 405 DAPI.TIF | 75b157e4cebc0448cbef5e622bc9a581 | https://omero.mit.edu/webclient/img_detail/25466/?dataset=1951 | CEL-250605SHO-14 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-36 | 403_7_w3Conf 488 GFP.TIF | d3f228e11d8907290196881b0cefbc01 | https://omero.mit.edu/webclient/img_detail/25466/?dataset=1951 | CEL-250605SHO-14 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-37 | 403_8_w1Conf 561 CY3.TIF | 808ae0529dc886837880e075e01239f0 | https://omero.mit.edu/webclient/img_detail/25467/?dataset=1951 | CEL-250605SHO-15 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-38 | 403_8_w2Conf 405 DAPI.TIF | 0242c09e60885ece61fa5f8b78f8553e | https://omero.mit.edu/webclient/img_detail/25467/?dataset=1951 | CEL-250605SHO-15 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-39 | 403_8_w3Conf 488 GFP.TIF | b3e8125bd5e8b2637bf6d92cd4a75ea6 | https://omero.mit.edu/webclient/img_detail/25467/?dataset=1951 | CEL-250605SHO-15 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-40 | 403_9_w1Conf 561 CY3.TIF | 894d98a79c07a246e108a9abf1061b45 | https://omero.mit.edu/webclient/img_detail/25472/?dataset=1951 | CEL-250605SHO-16 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-41 | 403_9_w2Conf 405 DAPI.TIF | cbdc7fbc5be5ffd77201c9d5c7ee7b53 | https://omero.mit.edu/webclient/img_detail/25472/?dataset=1951 | CEL-250605SHO-16 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-42 | 403_9_w3Conf 488 GFP.TIF | 1f7474a3eeb22507e733a653ec5bc5ce | https://omero.mit.edu/webclient/img_detail/25472/?dataset=1951 | CEL-250605SHO-16 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-43 | 403_new_setting_10_w1Conf 561 CY3.TIF | 4cbaf5ab36dc6c501bb81da8053544da | https://omero.mit.edu/webclient/img_detail/25461/?dataset=1951 | CEL-250605SHO-3 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-44 | 403_new_setting_10_w2Conf 405 DAPI.TIF | 08e1566ed258833fee21d809832808bb | https://omero.mit.edu/webclient/img_detail/25461/?dataset=1951 | CEL-250605SHO-3 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-45 | 403_new_setting_10_w3Conf 488 GFP.TIF | 09924494728607367056f260a4168075 | https://omero.mit.edu/webclient/img_detail/25461/?dataset=1951 | CEL-250605SHO-3 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-46 | 403_new_setting_11_w1Conf 561 CY3.TIF | 4e877131b5c080c64f2acdd44de31521 | https://omero.mit.edu/webclient/img_detail/25463/?dataset=1951 | CEL-250605SHO-4 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-47 | 403_new_setting_11_w2Conf 405 DAPI.TIF | 66be4259a6a47229d710cb416bc32734 | https://omero.mit.edu/webclient/img_detail/25463/?dataset=1951 | CEL-250605SHO-4 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-48 | 403_new_setting_11_w3Conf 488 GFP.TIF | 1ba9586d0e0fbd682b26c08015d4fa55 | https://omero.mit.edu/webclient/img_detail/25463/?dataset=1951 | CEL-250605SHO-4 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-49 | 403_new_setting_12_w1Conf 561 CY3.TIF | 887de32fa19d5e0edd92cda1eabe209b | https://omero.mit.edu/webclient/img_detail/25462/?dataset=1951 | CEL-250605SHO-5 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-50 | 403_new_setting_12_w2Conf 405 DAPI.TIF | 9f68c99723942c14d2e8bd7349bbff42 | https://omero.mit.edu/webclient/img_detail/25462/?dataset=1951 | CEL-250605SHO-5 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-51 | 403_new_setting_12_w3Conf 488 GFP.TIF | 2da652b8285901ed10977ed991261c80 | https://omero.mit.edu/webclient/img_detail/25462/?dataset=1951 | CEL-250605SHO-5 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-52 | 403_new_setting_13_w1Conf 561 CY3.TIF | 3533f4a3291d5b35c6e96be5b9578ed4 | https://omero.mit.edu/webclient/img_detail/25459/?dataset=1951 | CEL-250605SHO-6 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-53 | 403_new_setting_13_w2Conf 405 DAPI.TIF | 8317e7dac475cd77c721c7ead215db22 | https://omero.mit.edu/webclient/img_detail/25459/?dataset=1951 | CEL-250605SHO-6 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-54 | 403_new_setting_13_w3Conf 488 GFP.TIF | 3dab5af94c911589d8d050f26bef4471 | https://omero.mit.edu/webclient/img_detail/25459/?dataset=1951 | CEL-250605SHO-6 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-55 | 403_new_setting_14_w1Conf 561 CY3.TIF | cfb556187c9b3e00729ad72dd5fba64f | https://omero.mit.edu/webclient/img_detail/25456/?dataset=1951 | CEL-250605SHO-7 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-56 | 403_new_setting_14_w2Conf 405 DAPI.TIF | f229ca936fc512835dfcc127d6b1decd | https://omero.mit.edu/webclient/img_detail/25456/?dataset=1951 | CEL-250605SHO-7 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-57 | 403_new_setting_14_w3Conf 488 GFP.TIF | dcb8f7ac1a4c5dc24a3140942deef904 | https://omero.mit.edu/webclient/img_detail/25456/?dataset=1951 | CEL-250605SHO-7 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-58 | 403_new_setting_15_w1Conf 561 CY3.TIF | 9290a060abc52a09d5e2228c06644df0 | https://omero.mit.edu/webclient/img_detail/25457/?dataset=1951 | CEL-250605SHO-17 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-59 | 403_new_setting_15_w2Conf 405 DAPI.TIF | 721d6524fb9ad2745a5a2416525f1583 | https://omero.mit.edu/webclient/img_detail/25457/?dataset=1951 | CEL-250605SHO-17 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-60 | 403_new_setting_15_w3Conf 488 GFP.TIF | c4613fc33ab5f35bb663b5b5bc963ead | https://omero.mit.edu/webclient/img_detail/25457/?dataset=1951 | CEL-250605SHO-17 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-61 | 403_new_setting_16_w1Conf 561 CY3.TIF | b53397fe14ff3f5b2538f0fdefb83821 | https://omero.mit.edu/webclient/img_detail/25458/?dataset=1951 | CEL-250605SHO-18 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-62 | 403_new_setting_16_w2Conf 405 DAPI.TIF | bc97be934a85d2f8a33ce32dd94e64cb | https://omero.mit.edu/webclient/img_detail/25458/?dataset=1951 | CEL-250605SHO-18 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-63 | 403_new_setting_16_w3Conf 488 GFP.TIF | 06bce19123342e8e8fceb5c431adbbb7 | https://omero.mit.edu/webclient/img_detail/25458/?dataset=1951 | CEL-250605SHO-18 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-64 | 403_new_setting_17_w1Conf 561 CY3.TIF | 9f27ea302caa885a2c0552c4c8ca7324 | https://omero.mit.edu/webclient/img_detail/25451/?dataset=1951 | CEL-250605SHO-19 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-65 | 403_new_setting_17_w2Conf 405 DAPI.TIF | 9e7d4439bf0712724a3f6298003821fe | https://omero.mit.edu/webclient/img_detail/25451/?dataset=1951 | CEL-250605SHO-19 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-66 | 403_new_setting_17_w3Conf 488 GFP.TIF | 5b38cc82fdd6990ca87ed198258464c3 | https://omero.mit.edu/webclient/img_detail/25451/?dataset=1951 | CEL-250605SHO-19 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-67 | 403_new_setting_18_w1Conf 561 CY3.TIF | eb6bb94f68fab32d699f66979e008005 | https://omero.mit.edu/webclient/img_detail/25460/?dataset=1951 | CEL-250605SHO-20 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-68 | 403_new_setting_18_w2Conf 405 DAPI.TIF | 8d351c37a9f0bb370c5eb5216111675f | https://omero.mit.edu/webclient/img_detail/25460/?dataset=1951 | CEL-250605SHO-20 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-69 | 403_new_setting_18_w3Conf 488 GFP.TIF | 13e14d658fd8e5fd26d0fe3aab928023 | https://omero.mit.edu/webclient/img_detail/25460/?dataset=1951 | CEL-250605SHO-20 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-70 | 403_new_setting_1_w1Conf 561 CY3.TIF | c31b2f9e7159b4d5c8db3c9a97240ca2 | https://omero.mit.edu/webclient/img_detail/25473/?dataset=1951 | CEL-250605SHO-8 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-71 | 403_new_setting_1_w2Conf 405 DAPI.TIF | f538ca1e92e11d51c02d092c9c04f97a | https://omero.mit.edu/webclient/img_detail/25473/?dataset=1951 | CEL-250605SHO-8 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-72 | 403_new_setting_1_w3Conf 488 GFP.TIF | c6cbb1d6e0afd44131ca60acedc477c2 | https://omero.mit.edu/webclient/img_detail/25473/?dataset=1951 | CEL-250605SHO-8 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-73 | 403_new_setting_2_w1Conf 561 CY3.TIF | 3aa82c2181f0a30c0b216d42df7190ae | https://omero.mit.edu/webclient/img_detail/25475/?dataset=1951 | CEL-250605SHO-9 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-74 | 403_new_setting_2_w2Conf 405 DAPI.TIF | 4bcfac31f284b0bbfa5f645894528b3f | https://omero.mit.edu/webclient/img_detail/25475/?dataset=1951 | CEL-250605SHO-9 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-75 | 403_new_setting_2_w3Conf 488 GFP.TIF | 9d22aea4900986732a4ab3e551ac3d29 | https://omero.mit.edu/webclient/img_detail/25475/?dataset=1951 | CEL-250605SHO-9 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-76 | 403_new_setting_3_w1Conf 561 CY3.TIF | 407e01693fac719df0a9e49bc57f1261 | https://omero.mit.edu/webclient/img_detail/25479/?dataset=1951 | CEL-250605SHO-10 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-77 | 403_new_setting_3_w2Conf 405 DAPI.TIF | 574fd16bba96e731ce38eb0eb981198f | https://omero.mit.edu/webclient/img_detail/25479/?dataset=1951 | CEL-250605SHO-10 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-78 | 403_new_setting_3_w3Conf 488 GFP.TIF | 2358dd349fe280748bd681fe0b4aa176 | https://omero.mit.edu/webclient/img_detail/25479/?dataset=1951 | CEL-250605SHO-10 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-79 | 403_new_setting_4_w1Conf 561 CY3.TIF | a357d592483c369d387b555be997a557 | https://omero.mit.edu/webclient/img_detail/25477/?dataset=1951 | CEL-250605SHO-11 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-80 | 403_new_setting_4_w2Conf 405 DAPI.TIF | d0082c61cb5bfe36fab705c293d89846 | https://omero.mit.edu/webclient/img_detail/25477/?dataset=1951 | CEL-250605SHO-11 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-81 | 403_new_setting_4_w3Conf 488 GFP.TIF | d0e0cbb7dd6f6d19a29f05b3b698fab3 | https://omero.mit.edu/webclient/img_detail/25477/?dataset=1951 | CEL-250605SHO-11 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-82 | 403_new_setting_5_w1Conf 561 CY3.TIF | 6d163747fbef6c928a367e0c906e2e15 | https://omero.mit.edu/webclient/img_detail/25482/?dataset=1951 | CEL-250605SHO-12 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-83 | 403_new_setting_5_w2Conf 405 DAPI.TIF | aa710762515681c2b3291bda1e09195a | https://omero.mit.edu/webclient/img_detail/25482/?dataset=1951 | CEL-250605SHO-12 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-84 | 403_new_setting_5_w3Conf 488 GFP.TIF | d521e2f7e6d01af14ce5a61ccedb0bac | https://omero.mit.edu/webclient/img_detail/25482/?dataset=1951 | CEL-250605SHO-12 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-85 | 403_new_setting_6_w1Conf 561 CY3.TIF | bf5eb0e2701bc6ed24dd6ea502764a9d | https://omero.mit.edu/webclient/img_detail/25453/?dataset=1951 | CEL-250605SHO-13 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-86 | 403_new_setting_6_w2Conf 405 DAPI.TIF | 429f63b6be9ec87bdc56aa5f02f2e31b | https://omero.mit.edu/webclient/img_detail/25453/?dataset=1951 | CEL-250605SHO-13 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-87 | 403_new_setting_6_w3Conf 488 GFP.TIF | 743f8be4c0462464be2cc96619cd86f7 | https://omero.mit.edu/webclient/img_detail/25453/?dataset=1951 | CEL-250605SHO-13 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-88 | 403_new_setting_7_w1Conf 561 CY3.TIF | 882b14a22e2562af9d1adfb0dc29d7b7 | https://omero.mit.edu/webclient/img_detail/25454/?dataset=1951 | CEL-250605SHO-14 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-89 | 403_new_setting_7_w2Conf 405 DAPI.TIF | 6bc72325a374c0b7fcf8ab76e58b1c1a | https://omero.mit.edu/webclient/img_detail/25454/?dataset=1951 | CEL-250605SHO-14 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-90 | 403_new_setting_7_w3Conf 488 GFP.TIF | 709df11d5a8326f2245c9e5465db2f5f | https://omero.mit.edu/webclient/img_detail/25454/?dataset=1951 | CEL-250605SHO-14 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-91 | 403_new_setting_8_w1Conf 561 CY3.TIF | 005c46cce2a7f9ea8c29aef86b141a4f | https://omero.mit.edu/webclient/img_detail/25452/?dataset=1951 | CEL-250605SHO-15 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-92 | 403_new_setting_8_w2Conf 405 DAPI.TIF | d6e43cbc88cf3c7fedb9f6bfa8fd9c18 | https://omero.mit.edu/webclient/img_detail/25452/?dataset=1951 | CEL-250605SHO-15 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-93 | 403_new_setting_8_w3Conf 488 GFP.TIF | 97ca91db40a9a4179836215bfda085cf | https://omero.mit.edu/webclient/img_detail/25452/?dataset=1951 | CEL-250605SHO-15 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-94 | 403_new_setting_9_w1Conf 561 CY3.TIF | c8aeb4462b57370eb8e77d20009c030e | https://omero.mit.edu/webclient/img_detail/25455/?dataset=1951 | CEL-250605SHO-16 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-95 | 403_new_setting_9_w2Conf 405 DAPI.TIF | 2f2cbf73e7be0cf23f584d75332e65dc | https://omero.mit.edu/webclient/img_detail/25455/?dataset=1951 | CEL-250605SHO-16 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-96 | 403_new_setting_9_w3Conf 488 GFP.TIF | da21b2ce41b2c2c66a21f0b58f9635f1 | https://omero.mit.edu/webclient/img_detail/25455/?dataset=1951 | CEL-250605SHO-16 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-97 | 171_1_w1Conf 561 CY3.TIF | 5fa35fb904694b1bc5edfab2f1a0d946 | https://omero.mit.edu/webclient/img_detail/25489/?dataset=1951 | CEL-250605SHO-21 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-98 | 171_1_w2Conf 405 DAPI.TIF | 8f04db5202866b8b94cf8294c7685dc9 | https://omero.mit.edu/webclient/img_detail/25489/?dataset=1951 | CEL-250605SHO-21 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-99 | 171_1_w3Conf 488 GFP.TIF | c37dcb06b832f0be2df409164f94f2d4 | https://omero.mit.edu/webclient/img_detail/25489/?dataset=1951 | CEL-250605SHO-21 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
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| UID | Name | Scientist | Protocol | Notes | Lab | Parent | Type | StorageType | Volume | VolumeUnits | ExtractionMethod | QC_Instrument |
| RNA-250605SHO-1 | D21-157037 390 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-1_e | Shoulders Lab | CEL-250605SHO-43 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-2 | D21-157038 391 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-2_e | Shoulders Lab | CEL-250605SHO-44 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-3 | D21-157039 675 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-1_e | Shoulders Lab | CEL-250605SHO-45 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-4 | D21-157040 676 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-2_e | Shoulders Lab | CEL-250605SHO-46 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-5 | D21-157041 972 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-1_e | Shoulders Lab | CEL-250605SHO-47 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-6 | D21-157042 973 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-2_e | Shoulders Lab | CEL-250605SHO-48 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-7 | D21-157085 406 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-1_l | Shoulders Lab | CEL-250605SHO-49 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-8 | D21-157086 407 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-2_l | Shoulders Lab | CEL-250605SHO-50 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-9 | D21-157087 408 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-3_l | Shoulders Lab | CEL-250605SHO-51 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-10 | D21-157088 409 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-4_l | Shoulders Lab | CEL-250605SHO-52 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-11 | D21-157089 691 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-1_l | Shoulders Lab | CEL-250605SHO-53 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-12 | D21-157090 692 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-2_l | Shoulders Lab | CEL-250605SHO-54 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-13 | D21-157091 693 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-3_l | Shoulders Lab | CEL-250605SHO-55 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-14 | D21-157092 694 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-4_l | Shoulders Lab | CEL-250605SHO-56 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-15 | D21-157093 988 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-1_l | Shoulders Lab | CEL-250605SHO-57 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-16 | D21-157094 989 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-2_l | Shoulders Lab | CEL-250605SHO-58 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-17 | D21-157095 990 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-3_l | Shoulders Lab | CEL-250605SHO-59 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-18 | D21-157096 991 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-4_l | Shoulders Lab | CEL-250605SHO-60 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
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| UID | Name | Protocol | Scientist | Parent | Type | NumPrepCycles | Barcode | LibraryPrepProtocol | QC_Instrument | VolumeUnits | ExtractionMethod |
| DNA-250605SHO-1 | D21-157037 390 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-1 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-2 | D21-157038 391 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-2 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-3 | D21-157039 675 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-3 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-4 | D21-157040 676 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-4 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-5 | D21-157041 972 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-5 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-6 | D21-157042 973 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-6 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-7 | D21-157085 406 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-7 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-8 | D21-157086 407 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-8 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-9 | D21-157087 408 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-9 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-10 | D21-157088 409 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-10 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-11 | D21-157089 691 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-11 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-12 | D21-157090 692 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-12 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-13 | D21-157091 693 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-13 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-14 | D21-157092 694 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-14 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-15 | D21-157093 988 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-15 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-16 | D21-157094 989 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-16 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-17 | D21-157095 990 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-17 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-18 | D21-157096 991 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-18 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
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| UID | File_PrimaryData | File_SecondaryData | Protocol | Scientist | Link_PrimaryData | Link_SecondaryData | Checksum_PrimaryData | Checksum_SecondaryData | Parent | DataType | SequencingType | Sequencer | F_bp | R_bp | LibraryStrategy | LibrarySource | LibrarySelection | LibraryDesign | Accession | Repository |
| D.SEQ-250605SHO-1 | 210322Sho_D21-157037_sequence_1.fastq.gz | 210322Sho_D21-157037_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | c0e07491f6e7d6af34f026073eb9a57f | bac4b5daf38ac3d2d038f67e5c223315 | DNA-250605SHO-1 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-2 | 210322Sho_D21-157038_sequence_1.fastq.gz | 210322Sho_D21-157038_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | a4709cbb3e6e102eb053d6f3294165d9 | c5fc1ac05da3a03a987ff3aa2f2e196f | DNA-250605SHO-2 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-3 | 210322Sho_D21-157039_sequence_1.fastq.gz | 210322Sho_D21-157039_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 4d3b45e9903a9e951e43ef72db67af04 | 0acf0f08fd1fcc6da9104b670e1a7437 | DNA-250605SHO-3 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-4 | 210322Sho_D21-157040_sequence_1.fastq.gz | 210322Sho_D21-157040_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 6e4fc3cbf4d0b9859308d9163f085d60 | 21c78e73b554f07e84e2878991957571 | DNA-250605SHO-4 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-5 | 210322Sho_D21-157041_sequence_1.fastq.gz | 210322Sho_D21-157041_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 3c36fbf1c1b95828a01560eac2862891 | 1ef4688cc99c5a3e74cd9d94c20af0cd | DNA-250605SHO-5 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-6 | 210322Sho_D21-157042_sequence_1.fastq.gz | 210322Sho_D21-157042_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | df105ccbc434754e17e91d854807d9ea | dec825788163acd58691b7b0c3fed5af | DNA-250605SHO-6 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-7 | 210322Sho_D21-157085_sequence_1.fastq.gz | 210322Sho_D21-157085_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 728d6d8b669008fdaf186683cb06440c | d6b2f86a6e90605ec1ba8a94b6401e9c | DNA-250605SHO-7 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-8 | 210322Sho_D21-157086_sequence_1.fastq.gz | 210322Sho_D21-157086_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 381db7b85fba07441d1ba30a2bd64d73 | 0c2d539c1305602d49d69c48c38dbb88 | DNA-250605SHO-8 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-9 | 210322Sho_D21-157087_sequence_1.fastq.gz | 210322Sho_D21-157087_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 95484928f4c59ffef15dd7e4d43414cc | ccfb5a71195370e4012565f754ed98d0 | DNA-250605SHO-9 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-10 | 210322Sho_D21-157088_sequence_1.fastq.gz | 210322Sho_D21-157088_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 176c8b2ab0552abe4f4a9f5ec6e37748 | de8748f85a72bf769dadde86e043cb80 | DNA-250605SHO-10 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-11 | 210322Sho_D21-157089_sequence_1.fastq.gz | 210322Sho_D21-157089_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 2d7de05b255b6b76968f9a558c02112c | 832d4ff411b436f52a29a6f5634e3762 | DNA-250605SHO-11 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-12 | 210322Sho_D21-157090_sequence_1.fastq.gz | 210322Sho_D21-157090_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 53724aa13cef013df38d3f01ffe39e74 | 83f0c1c414a80210bec6a3305c606070 | DNA-250605SHO-12 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-13 | 210322Sho_D21-157091_sequence_1.fastq.gz | 210322Sho_D21-157091_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 9ed163f950d38fc7e40bc79ebacf0e9d | 1d11ed4df566d978918d09100bdcde3b | DNA-250605SHO-13 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-14 | 210322Sho_D21-157092_sequence_1.fastq.gz | 210322Sho_D21-157092_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | f936ab7a7940ffa21a144f8494a2e73f | eb4069b48d1139a73f6a6c218ad0d204 | DNA-250605SHO-14 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-15 | 210322Sho_D21-157093_sequence_1.fastq.gz | 210322Sho_D21-157093_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 3586b15922543f6f36912e8fa748c5e3 | b3d62d0880f7d8b0bee88c4cd1f57475 | DNA-250605SHO-15 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-16 | 210322Sho_D21-157094_sequence_1.fastq.gz | 210322Sho_D21-157094_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 4490c084a27f8d30f376f1e1743562bf | ac88d43e1587bda2517e7d9f3b27a4d9 | DNA-250605SHO-16 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-17 | 210322Sho_D21-157095_sequence_1.fastq.gz | 210322Sho_D21-157095_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | b56fae3eccd8c435b6517b5ba047e6f5 | 54b33fac09ac0796e2bca39016bc65ae | DNA-250605SHO-17 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-18 | 210322Sho_D21-157096_sequence_1.fastq.gz | 210322Sho_D21-157096_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 05d5a4edd8416cc73c85c0bca0387846 | 02414dcf8597c51d78c7123cde20f882 | DNA-250605SHO-18 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
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| UID | File_PrimaryData | Link_PrimaryData | Scientist | Parent | Protocol | ReferenceGenome | Checksum_PrimaryData | DataType | Notes | Software | Accession |
| A.GEX-250605SHO-1 | GSE271431_Gene_expression_counts_R219C.csv.gz | https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE271431&format=file&file=GSE271431%5FGene%5Fexpression%5Fcounts%5FR219C%2Ecsv%2Egz | Vincent Butty | D.SEQ-250605SHO-1; D.SEQ-250605SHO-2; D.SEQ-250605SHO-3; D.SEQ-250605SHO-4; D.SEQ-250605SHO-5; D.SEQ-250605SHO-6; D.SEQ-250605SHO-7; D.SEQ-250605SHO-8; D.SEQ-250605SHO-9; D.SEQ-250605SHO-10; D.SEQ-250605SHO-11; D.SEQ-250605SHO-12; D.SEQ-250605SHO-13; D.SEQ-250605SHO-14; D.SEQ-250605SHO-15; D.SEQ-250605SHO-16; D.SEQ-250605SHO-17; D.SEQ-250605SHO-18 | https://fairdomhub.org/sops/833 | GRCh38/ENSEMBL 101 | 7e2c584506756d0344848ba29f45ec60 | CSV | Raw gene level counts | Salmon v1.3, DESeq2, GSEA v4.1, tximport | GSE271431 |
| A.GEX-250605SHO-2 | GSE271431_Gene_expression_log2TPMs_R219C.csv.gz | https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE271431&format=file&file=GSE271431%5FGene%5Fexpression%5Flog2TPMs%5FR219C%2Ecsv%2Egz | Vincent Butty | D.SEQ-250605SHO-1; D.SEQ-250605SHO-2; D.SEQ-250605SHO-3; D.SEQ-250605SHO-4; D.SEQ-250605SHO-5; D.SEQ-250605SHO-6; D.SEQ-250605SHO-7; D.SEQ-250605SHO-8; D.SEQ-250605SHO-9; D.SEQ-250605SHO-10; D.SEQ-250605SHO-11; D.SEQ-250605SHO-12; D.SEQ-250605SHO-13; D.SEQ-250605SHO-14; D.SEQ-250605SHO-15; D.SEQ-250605SHO-16; D.SEQ-250605SHO-17; D.SEQ-250605SHO-18 | https://fairdomhub.org/sops/833 | GRCh38/ENSEMBL 101 | 83b17aafbe1c1bc1713ef34d8575b6aa | CSV | log2 transformed transcripts per million values | Salmon v1.3, DESeq2, GSEA v4.1, tximport | GSE271431 |
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| UID | File_PrimaryData | Link_PrimaryData | Parent | SampleCreationDate | Protocol | Method | Instrument | Scientist | Repository | RepositoryID | PRIDE_FileType | PRIDE_ExperimentType | PRIDE_Modification | PRIDE_Quantification | MetadataFile | ScanFile | Software | Identification |
| D.MSP-250606SHO-1 | f.MSV000096151/raw/rs240609_1505_KY_10plex_01.raw | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | CEL-250606SHO-2; CEL-250606SHO-3 | 2024-06-09T0:0:0+0000 | https://fairdomhub.org/sops/835 | LC-MS/MS | Orbitrap Eclipse Tribrid (Thermo Scientific) | Kathryn Yammine | MassIVE | MSV000096151 | Raw | Shotgun proteomics | Oxidation | TMTpro16plex | f.MSV000096151/ccms_parameters/params.xml | f.MSV000096151/ccms_metadata/ccms_peak/rs240609_1505_KY_10plex_01.mzML.scans | Proteome Discoverer 2.4 | SEQUEST |
| D.MSP-250606SHO-2 | f.MSV000096151/peak/rs240609_1505_KY_10plex_01.mzML | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | CEL-250606SHO-2; CEL-250606SHO-3 | 2024-06-09T0:0:0+0000 | https://fairdomhub.org/sops/835 | LC-MS/MS | Orbitrap Eclipse Tribrid (Thermo Scientific) | Kathryn Yammine | MassIVE | MSV000096151 | Peak | Shotgun proteomics | Oxidation | TMTpro16plex | f.MSV000096151/ccms_parameters/params.xml | f.MSV000096151/ccms_metadata/ccms_peak/rs240609_1505_KY_10plex_01.mzML.scans | Proteome Discoverer 2.4 | SEQUEST |
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| UID | File_PrimaryData | Link_PrimaryData | Protocol | Parent | QuantificationMethod | Scientist | PRIDE_FileType | ||
| A.MSP-250606SHO-1 | f.MSV000096151/result/rs240609_1505_KY_10plex_01.mzid | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | RESULT | ||
| A.MSP-250606SHO-2 | f.MSV000096151/ccms_result/rs240609_1505_KY_10plex_01.mzTab | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | RESULT | ||
| A.MSP-250606SHO-3 | f.MSV000096151/ccms_statistics/statistics.tsv | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | STATISTICS | ||
