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| UID | Name | Parent | Mutation | Species | CellLine | Protocol | Source | Type | GrowthConditions | Media | Passages | Scientist | RepositoryLink | BioSampleAccession | EthicsApproval | AssayType | StorageType | Catalog# | Link_Catalog# |
| CEL-250605SHO-1 | MCRIi019-A-WT | WildType | Homo Sapiens | MCRIi019-A | https://fairdomhub.org/sops/832 | ATCC Fibroblast line 1502 | Induced Pluripotent Stem Cells (iPSC) | Feeder-free on Matrigel-coated 6-well plates | Essential 8 (E8) medium | 1:6 every 3–4 days using 0.5 mM EDTA in PBS | Kathryn Yammine | https://hpscreg.eu/cell-line/MCRIi019-A | https://www.ebi.ac.uk/biosamples/samples/SAMEA117742037 | HREC #33118, Royal Children’s Hospital, Victoria, Australia | Frozen | CRL-1502 | https://www.atcc.org/products/crl-1502 | ||
| CEL-250605SHO-2 | MCRIi019-A-6 | CEL-250605SHO-1 | CRISPR/Cas9 editing to introduce COL2A1 c.2155C>T (p.Arg719Cys) | MCRIi019-A | https://fairdomhub.org/sops/832 | Induced Pluripotent Stem Cells (iPSC) | Feeder-free on Matrigel-coated 6-well plates | Essential 8 (E8) medium | 1:6 every 3–4 days using 0.5 mM EDTA in PBS | Kathryn Yammine | https://hpscreg.eu/cell-line/MCRIi019-A | https://www.ebi.ac.uk/biosamples/samples/SAMEA117742037 | HREC #33118, Royal Children’s Hospital, Victoria, Australia | Frozen | CRL-1502 | https://www.atcc.org/products/crl-1502 | |||
| CEL-250605SHO-3 | 403_10-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-4 | 403_11-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-5 | 403_12-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-6 | 403_13-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-7 | 403_14-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-8 | 403_1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-9 | 403_2-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-10 | 403_3-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-11 | 403_4-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-12 | 403_5-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-13 | 403_6-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-14 | 403_7-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-15 | 403_8-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-16 | 403_9-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-17 | 403_15-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-18 | 403_16-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-19 | 403_17-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-20 | 403_18-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-21 | 171_1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-22 | 171_2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-23 | 171_3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-24 | 171_4-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-25 | 171_5-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-26 | 171_6-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-27 | 171_7-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-28 | 171_8-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-29 | 171_9-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-30 | 755_1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-31 | 755_2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-32 | 755_3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-33 | R-1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-34 | R-3-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-35 | R1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-36 | R2-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-37 | WT-1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-38 | R(080302021)-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-39 | WT-1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-40 | WT-2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-41 | WT-3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-42 | WT(08302021)-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-43 | R719C_1-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-44 | R719C_1-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-45 | R719C_2-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-46 | R719C_2-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-47 | R719C_3-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-48 | R719C_3-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-49 | R719C_1-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-50 | R719C_1-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-51 | R719C_1-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-52 | R719C_1-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-53 | R719C_2-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-54 | R719C_2-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-55 | R719C_2-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-56 | R719C_2-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-57 | R719C_3-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-58 | R719C_3-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-59 | R719C_3-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-60 | R719C_3-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250606SHO-1 | HT-1080 | Homo Sapiens | https://fairdomhub.org/sops/835 | ATCC | Human Fibrosarcoma Cell line | Kathryn Yammine | Proteomics | Vapor phase of liquid nitrogen | ccl-121 | https://www.atcc.org/products/ccl-121 | |||||||||
| CEL-250606SHO-2 | HT-1080 transfected with WT | CEL-250606SHO-1; CEL-250605SHO-1 | https://fairdomhub.org/sops/835 | Transfected Cell Line | Kathryn Yammine | Proteomics | |||||||||||||
| CEL-250606SHO-3 | HT-1080 transfected with Arg719Cys | CEL-250606SHO-1; CEL-250605SHO-2 | https://fairdomhub.org/sops/835 | Transfected Cell Line | Kathryn Yammine | Proteomics | |||||||||||||
| CEL-250606SHO-4 | Collagen extracted from chondronoids of both WT and Arg719Cys | CEL-250605SHO-1; CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | Collagen | Kathryn Yammine | SDS-Page | |||||||||||||
| CEL-250606SHO-5 | 405A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-6 | 405B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-7 | 405C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-8 | 452A | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-9 | 452B | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-10 | 452C | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-11 | 688A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-12 | 688B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-13 | 688C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-14 | 751A | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-15 | 751B | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-16 | 751C | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-17 | 985A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-18 | 985B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-19 | 985C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL |
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| D.IMG-250606SHO-132 | 452C_0001_fitc.jpg - brightness adjusted | 6300db01400227ac0d8c346428796d61 | https://omero.mit.edu/webclient/img_detail/25764/?dataset=1955 | CEL-250606SHO-10 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-133 | 452C_0002_fitc.jpg - brightness adjusted | 509b9b190799261b557ffb180a6a57ae | https://omero.mit.edu/webclient/img_detail/25784/?dataset=1955 | CEL-250606SHO-10 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-134 | 688A_0001_fitc.jpg - brightness adjusted | 4ea0098f8814adc1b80a1698a9d3bd89 | https://omero.mit.edu/webclient/img_detail/25780/?dataset=1955 | CEL-250606SHO-11 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-135 | 688A_0002_fitc.jpg - brightness adjusted | 9022667e4d2b0168f945e6258ee634f7 | https://omero.mit.edu/webclient/img_detail/25768/?dataset=1955 | CEL-250606SHO-11 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-136 | 688B_0001_fitc.jpg - brightness adjusted | de4bb0561db3d83a69e302e65be03c2d | https://omero.mit.edu/webclient/img_detail/25761/?dataset=1955 | CEL-250606SHO-12 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-137 | 688B_0002_fitc.jpg - brightness adjusted | f841d913af47c7919ef40d25fae9492d | https://omero.mit.edu/webclient/img_detail/25782/?dataset=1955 | CEL-250606SHO-12 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-138 | 688C_0001_fitc.jpg - brightness adjusted | 8787055d3a8d573e486148fd4fd68b95 | https://omero.mit.edu/webclient/img_detail/25774/?dataset=1955 | CEL-250606SHO-13 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-139 | 688C_0002_fitc.jpg - brightness adjusted | bbea534c1979cc107e283d853fa39d1d | https://omero.mit.edu/webclient/img_detail/25765/?dataset=1955 | CEL-250606SHO-13 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-140 | 751A_0001_fitc.jpg - brightness adjusted | a70800c08885856abd401e22ef75e4fd | https://omero.mit.edu/webclient/img_detail/25788/?dataset=1955 | CEL-250606SHO-14 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-141 | 751A_0002_fitc.jpg - brightness adjusted | b4b8174afb00d182af2ed4a178f81ce7 | https://omero.mit.edu/webclient/img_detail/25779/?dataset=1955 | CEL-250606SHO-14 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-142 | 751B_0001_fitc.jpg - brightness adjusted | aecd24b1508da485faac192b8c1169f6 | https://omero.mit.edu/webclient/img_detail/25771/?dataset=1955 | CEL-250606SHO-15 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-143 | 751B_0002_fitc.jpg - brightness adjusted | dd129da8f3bb456399dfe039ac54c0eb | https://omero.mit.edu/webclient/img_detail/25767/?dataset=1955 | CEL-250606SHO-15 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-144 | 751C_0001 (neg control)_fitc.jpg - brightness adjusted | 0b0f001dca9f7fad6ebf5baf3a7e5cbb | https://omero.mit.edu/webclient/img_detail/25789/?dataset=1955 | CEL-250606SHO-16 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-145 | 751C_0002 (neg control)_fitc.jpg - brightness adjusted | 7b8afca9388806b0ef11e525a7900125 | https://omero.mit.edu/webclient/img_detail/25777/?dataset=1955 | CEL-250606SHO-16 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-146 | 985A_0001_fitc.jpg - brightness adjusted | 5582f524cc44c91ed287a491e83f6326 | https://omero.mit.edu/webclient/img_detail/25781/?dataset=1955 | CEL-250606SHO-17 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-147 | 985A_0002_fitc.jpg - brightness adjusted | 3de7aed84f07177fd2d6798e0d8d8bfb | https://omero.mit.edu/webclient/img_detail/25769/?dataset=1955 | CEL-250606SHO-17 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-148 | 985B_0001_fitc.jpg - brightness adjusted | 69da32ea088612e5553bf28dd50b42c2 | https://omero.mit.edu/webclient/img_detail/25762/?dataset=1955 | CEL-250606SHO-18 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-149 | 985B_0002_fitc.jpg - brightness adjusted | 5c74d2d40be440b3fcfaa7100384e7a6 | https://omero.mit.edu/webclient/img_detail/25783/?dataset=1955 | CEL-250606SHO-18 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-150 | 985C_0001_fitc.jpg - brightness adjusted | 5b4609df326ab3eeb82f0c48a35c5220 | https://omero.mit.edu/webclient/img_detail/25775/?dataset=1955 | CEL-250606SHO-19 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-151 | 985C_0002_fitc.jpg - brightness adjusted | 9be1dfa4a91ca92cb9dd50e0a5fc61bb | https://omero.mit.edu/webclient/img_detail/25766/?dataset=1955 | CEL-250606SHO-19 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-152 | Neg L_fitc.jpg | 5587c4492fe50f2a8b5b91a8d9a935db | https://omero.mit.edu/webclient/img_detail/25661/?dataset=1954 | Control | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-153 | Neg L_fitc.tiff | 634f4fd7c425f0fe5f7410ee8a19dea7 | https://omero.mit.edu/webclient/img_detail/25745/?dataset=1954 | Control | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-154 | Neg R_fitc.jpg | dcedd3c3af899b68484bb1bf55993b7f | https://omero.mit.edu/webclient/img_detail/25660/?dataset=1954 | Control | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-155 | Neg R_fitc.tiff | 04fd54d50144b1661dc00550a16c51df | https://omero.mit.edu/webclient/img_detail/25705/?dataset=1954 | Control | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-156 | IMG_7839.jpg | 508bf13452a30a72aafc49db248cf2a3 | https://omero.mit.edu/webclient/img_detail/25633/?dataset=1953 | CEL-250606SHO-4 | Kathryn Yammine | SDS-Page | https://fairdomhub.org/sops/834 | ||||||
| D.IMG-250606SHO-157 | IMG_7841.jpg | 91fc271136796daf1a4caa7f369dffb4 | https://omero.mit.edu/webclient/img_detail/25635/?dataset=1953 | CEL-250606SHO-4 | Kathryn Yammine | SDS-Page | https://fairdomhub.org/sops/834 | ||||||
| D.IMG-250606SHO-158 | IMG_7842.jpg | 13894f12aea63e26348e05241424c8d1 | https://omero.mit.edu/webclient/img_detail/25632/?dataset=1953 | CEL-250606SHO-4 | Kathryn Yammine | SDS-Page | https://fairdomhub.org/sops/834 | ||||||
| D.IMG-250606SHO-159 | IMG_7858.jpg | 4430e35d0239daf7131b551b002ba851 | https://omero.mit.edu/webclient/img_detail/25634/?dataset=1953 | CEL-250606SHO-4 | Kathryn Yammine | SDS-Page | https://fairdomhub.org/sops/834 | ||||||
| D.IMG-250606SHO-160 | IMG_7860.jpg | f7630d3a68d406c6c2bf45668415068b | https://omero.mit.edu/webclient/img_detail/25631/?dataset=1953 | CEL-250606SHO-4 | Kathryn Yammine | SDS-Page | https://fairdomhub.org/sops/834 |
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| UID | Name | Scientist | Protocol | Notes | Lab | Parent | Type | StorageType | Volume | VolumeUnits | ExtractionMethod | QC_Instrument |
| RNA-250605SHO-1 | D21-157037 390 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-1_e | Shoulders Lab | CEL-250605SHO-43 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-2 | D21-157038 391 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-2_e | Shoulders Lab | CEL-250605SHO-44 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-3 | D21-157039 675 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-1_e | Shoulders Lab | CEL-250605SHO-45 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-4 | D21-157040 676 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-2_e | Shoulders Lab | CEL-250605SHO-46 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-5 | D21-157041 972 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-1_e | Shoulders Lab | CEL-250605SHO-47 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-6 | D21-157042 973 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-2_e | Shoulders Lab | CEL-250605SHO-48 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-7 | D21-157085 406 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-1_l | Shoulders Lab | CEL-250605SHO-49 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-8 | D21-157086 407 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-2_l | Shoulders Lab | CEL-250605SHO-50 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-9 | D21-157087 408 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-3_l | Shoulders Lab | CEL-250605SHO-51 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-10 | D21-157088 409 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-4_l | Shoulders Lab | CEL-250605SHO-52 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-11 | D21-157089 691 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-1_l | Shoulders Lab | CEL-250605SHO-53 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-12 | D21-157090 692 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-2_l | Shoulders Lab | CEL-250605SHO-54 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-13 | D21-157091 693 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-3_l | Shoulders Lab | CEL-250605SHO-55 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-14 | D21-157092 694 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-4_l | Shoulders Lab | CEL-250605SHO-56 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-15 | D21-157093 988 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-1_l | Shoulders Lab | CEL-250605SHO-57 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-16 | D21-157094 989 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-2_l | Shoulders Lab | CEL-250605SHO-58 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-17 | D21-157095 990 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-3_l | Shoulders Lab | CEL-250605SHO-59 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-18 | D21-157096 991 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-4_l | Shoulders Lab | CEL-250605SHO-60 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
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| UID | Name | Protocol | Scientist | Parent | Type | NumPrepCycles | Barcode | LibraryPrepProtocol | QC_Instrument | VolumeUnits | ExtractionMethod |
| DNA-250605SHO-1 | D21-157037 390 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-1 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-2 | D21-157038 391 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-2 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-3 | D21-157039 675 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-3 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-4 | D21-157040 676 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-4 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-5 | D21-157041 972 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-5 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-6 | D21-157042 973 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-6 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-7 | D21-157085 406 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-7 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-8 | D21-157086 407 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-8 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-9 | D21-157087 408 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-9 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-10 | D21-157088 409 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-10 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-11 | D21-157089 691 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-11 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-12 | D21-157090 692 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-12 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-13 | D21-157091 693 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-13 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-14 | D21-157092 694 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-14 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-15 | D21-157093 988 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-15 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-16 | D21-157094 989 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-16 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-17 | D21-157095 990 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-17 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-18 | D21-157096 991 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-18 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
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| UID | File_PrimaryData | File_SecondaryData | Protocol | Scientist | Link_PrimaryData | Link_SecondaryData | Checksum_PrimaryData | Checksum_SecondaryData | Parent | DataType | SequencingType | Sequencer | F_bp | R_bp | LibraryStrategy | LibrarySource | LibrarySelection | LibraryDesign | Accession | Repository |
| D.SEQ-250605SHO-1 | 210322Sho_D21-157037_sequence_1.fastq.gz | 210322Sho_D21-157037_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | c0e07491f6e7d6af34f026073eb9a57f | bac4b5daf38ac3d2d038f67e5c223315 | DNA-250605SHO-1 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-2 | 210322Sho_D21-157038_sequence_1.fastq.gz | 210322Sho_D21-157038_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | a4709cbb3e6e102eb053d6f3294165d9 | c5fc1ac05da3a03a987ff3aa2f2e196f | DNA-250605SHO-2 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-3 | 210322Sho_D21-157039_sequence_1.fastq.gz | 210322Sho_D21-157039_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 4d3b45e9903a9e951e43ef72db67af04 | 0acf0f08fd1fcc6da9104b670e1a7437 | DNA-250605SHO-3 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-4 | 210322Sho_D21-157040_sequence_1.fastq.gz | 210322Sho_D21-157040_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 6e4fc3cbf4d0b9859308d9163f085d60 | 21c78e73b554f07e84e2878991957571 | DNA-250605SHO-4 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-5 | 210322Sho_D21-157041_sequence_1.fastq.gz | 210322Sho_D21-157041_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 3c36fbf1c1b95828a01560eac2862891 | 1ef4688cc99c5a3e74cd9d94c20af0cd | DNA-250605SHO-5 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-6 | 210322Sho_D21-157042_sequence_1.fastq.gz | 210322Sho_D21-157042_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | df105ccbc434754e17e91d854807d9ea | dec825788163acd58691b7b0c3fed5af | DNA-250605SHO-6 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-7 | 210322Sho_D21-157085_sequence_1.fastq.gz | 210322Sho_D21-157085_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 728d6d8b669008fdaf186683cb06440c | d6b2f86a6e90605ec1ba8a94b6401e9c | DNA-250605SHO-7 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-8 | 210322Sho_D21-157086_sequence_1.fastq.gz | 210322Sho_D21-157086_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 381db7b85fba07441d1ba30a2bd64d73 | 0c2d539c1305602d49d69c48c38dbb88 | DNA-250605SHO-8 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-9 | 210322Sho_D21-157087_sequence_1.fastq.gz | 210322Sho_D21-157087_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 95484928f4c59ffef15dd7e4d43414cc | ccfb5a71195370e4012565f754ed98d0 | DNA-250605SHO-9 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-10 | 210322Sho_D21-157088_sequence_1.fastq.gz | 210322Sho_D21-157088_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 176c8b2ab0552abe4f4a9f5ec6e37748 | de8748f85a72bf769dadde86e043cb80 | DNA-250605SHO-10 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-11 | 210322Sho_D21-157089_sequence_1.fastq.gz | 210322Sho_D21-157089_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 2d7de05b255b6b76968f9a558c02112c | 832d4ff411b436f52a29a6f5634e3762 | DNA-250605SHO-11 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-12 | 210322Sho_D21-157090_sequence_1.fastq.gz | 210322Sho_D21-157090_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 53724aa13cef013df38d3f01ffe39e74 | 83f0c1c414a80210bec6a3305c606070 | DNA-250605SHO-12 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-13 | 210322Sho_D21-157091_sequence_1.fastq.gz | 210322Sho_D21-157091_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 9ed163f950d38fc7e40bc79ebacf0e9d | 1d11ed4df566d978918d09100bdcde3b | DNA-250605SHO-13 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-14 | 210322Sho_D21-157092_sequence_1.fastq.gz | 210322Sho_D21-157092_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | f936ab7a7940ffa21a144f8494a2e73f | eb4069b48d1139a73f6a6c218ad0d204 | DNA-250605SHO-14 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-15 | 210322Sho_D21-157093_sequence_1.fastq.gz | 210322Sho_D21-157093_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 3586b15922543f6f36912e8fa748c5e3 | b3d62d0880f7d8b0bee88c4cd1f57475 | DNA-250605SHO-15 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-16 | 210322Sho_D21-157094_sequence_1.fastq.gz | 210322Sho_D21-157094_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 4490c084a27f8d30f376f1e1743562bf | ac88d43e1587bda2517e7d9f3b27a4d9 | DNA-250605SHO-16 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-17 | 210322Sho_D21-157095_sequence_1.fastq.gz | 210322Sho_D21-157095_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | b56fae3eccd8c435b6517b5ba047e6f5 | 54b33fac09ac0796e2bca39016bc65ae | DNA-250605SHO-17 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-18 | 210322Sho_D21-157096_sequence_1.fastq.gz | 210322Sho_D21-157096_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 05d5a4edd8416cc73c85c0bca0387846 | 02414dcf8597c51d78c7123cde20f882 | DNA-250605SHO-18 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
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| UID | File_PrimaryData | Link_PrimaryData | Scientist | Parent | Protocol | ReferenceGenome | Checksum_PrimaryData | DataType | Notes | Software | Accession |
| A.GEX-250605SHO-1 | GSE271431_Gene_expression_counts_R219C.csv.gz | https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE271431&format=file&file=GSE271431%5FGene%5Fexpression%5Fcounts%5FR219C%2Ecsv%2Egz | Vincent Butty | D.SEQ-250605SHO-1; D.SEQ-250605SHO-2; D.SEQ-250605SHO-3; D.SEQ-250605SHO-4; D.SEQ-250605SHO-5; D.SEQ-250605SHO-6; D.SEQ-250605SHO-7; D.SEQ-250605SHO-8; D.SEQ-250605SHO-9; D.SEQ-250605SHO-10; D.SEQ-250605SHO-11; D.SEQ-250605SHO-12; D.SEQ-250605SHO-13; D.SEQ-250605SHO-14; D.SEQ-250605SHO-15; D.SEQ-250605SHO-16; D.SEQ-250605SHO-17; D.SEQ-250605SHO-18 | https://fairdomhub.org/sops/833 | GRCh38/ENSEMBL 101 | 7e2c584506756d0344848ba29f45ec60 | CSV | Raw gene level counts | Salmon v1.3, DESeq2, GSEA v4.1, tximport | GSE271431 |
| A.GEX-250605SHO-2 | GSE271431_Gene_expression_log2TPMs_R219C.csv.gz | https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE271431&format=file&file=GSE271431%5FGene%5Fexpression%5Flog2TPMs%5FR219C%2Ecsv%2Egz | Vincent Butty | D.SEQ-250605SHO-1; D.SEQ-250605SHO-2; D.SEQ-250605SHO-3; D.SEQ-250605SHO-4; D.SEQ-250605SHO-5; D.SEQ-250605SHO-6; D.SEQ-250605SHO-7; D.SEQ-250605SHO-8; D.SEQ-250605SHO-9; D.SEQ-250605SHO-10; D.SEQ-250605SHO-11; D.SEQ-250605SHO-12; D.SEQ-250605SHO-13; D.SEQ-250605SHO-14; D.SEQ-250605SHO-15; D.SEQ-250605SHO-16; D.SEQ-250605SHO-17; D.SEQ-250605SHO-18 | https://fairdomhub.org/sops/833 | GRCh38/ENSEMBL 101 | 83b17aafbe1c1bc1713ef34d8575b6aa | CSV | log2 transformed transcripts per million values | Salmon v1.3, DESeq2, GSEA v4.1, tximport | GSE271431 |
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| UID | File_PrimaryData | Link_PrimaryData | Parent | SampleCreationDate | Protocol | Method | Instrument | Scientist | Repository | RepositoryID | PRIDE_FileType | PRIDE_ExperimentType | PRIDE_Modification | PRIDE_Quantification | MetadataFile | ScanFile | Software | Identification |
| D.MSP-250606SHO-1 | f.MSV000096151/raw/rs240609_1505_KY_10plex_01.raw | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | CEL-250606SHO-2; CEL-250606SHO-3 | 2024-06-09T0:0:0+0000 | https://fairdomhub.org/sops/835 | LC-MS/MS | Orbitrap Eclipse Tribrid (Thermo Scientific) | Kathryn Yammine | MassIVE | MSV000096151 | Raw | Shotgun proteomics | Oxidation | TMTpro16plex | f.MSV000096151/ccms_parameters/params.xml | f.MSV000096151/ccms_metadata/ccms_peak/rs240609_1505_KY_10plex_01.mzML.scans | Proteome Discoverer 2.4 | SEQUEST |
| D.MSP-250606SHO-2 | f.MSV000096151/peak/rs240609_1505_KY_10plex_01.mzML | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | CEL-250606SHO-2; CEL-250606SHO-3 | 2024-06-09T0:0:0+0000 | https://fairdomhub.org/sops/835 | LC-MS/MS | Orbitrap Eclipse Tribrid (Thermo Scientific) | Kathryn Yammine | MassIVE | MSV000096151 | Peak | Shotgun proteomics | Oxidation | TMTpro16plex | f.MSV000096151/ccms_parameters/params.xml | f.MSV000096151/ccms_metadata/ccms_peak/rs240609_1505_KY_10plex_01.mzML.scans | Proteome Discoverer 2.4 | SEQUEST |
A
B
C
D
E
F
G
H
I
J
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
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35
| UID | File_PrimaryData | Link_PrimaryData | Protocol | Parent | QuantificationMethod | Scientist | PRIDE_FileType | ||
| A.MSP-250606SHO-1 | f.MSV000096151/result/rs240609_1505_KY_10plex_01.mzid | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | RESULT | ||
| A.MSP-250606SHO-2 | f.MSV000096151/ccms_result/rs240609_1505_KY_10plex_01.mzTab | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | RESULT | ||
| A.MSP-250606SHO-3 | f.MSV000096151/ccms_statistics/statistics.tsv | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | STATISTICS | ||
