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| UID | Name | Parent | Mutation | Species | CellLine | Protocol | Source | Type | GrowthConditions | Media | Passages | Scientist | RepositoryLink | BioSampleAccession | EthicsApproval | AssayType | StorageType | Catalog# | Link_Catalog# |
| CEL-250605SHO-1 | MCRIi019-A-WT | WildType | Homo Sapiens | MCRIi019-A | https://fairdomhub.org/sops/832 | ATCC Fibroblast line 1502 | Induced Pluripotent Stem Cells (iPSC) | Feeder-free on Matrigel-coated 6-well plates | Essential 8 (E8) medium | 1:6 every 3–4 days using 0.5 mM EDTA in PBS | Kathryn Yammine | https://hpscreg.eu/cell-line/MCRIi019-A | https://www.ebi.ac.uk/biosamples/samples/SAMEA117742037 | HREC #33118, Royal Children’s Hospital, Victoria, Australia | Frozen | CRL-1502 | https://www.atcc.org/products/crl-1502 | ||
| CEL-250605SHO-2 | MCRIi019-A-6 | CEL-250605SHO-1 | CRISPR/Cas9 editing to introduce COL2A1 c.2155C>T (p.Arg719Cys) | MCRIi019-A | https://fairdomhub.org/sops/832 | Induced Pluripotent Stem Cells (iPSC) | Feeder-free on Matrigel-coated 6-well plates | Essential 8 (E8) medium | 1:6 every 3–4 days using 0.5 mM EDTA in PBS | Kathryn Yammine | https://hpscreg.eu/cell-line/MCRIi019-A | https://www.ebi.ac.uk/biosamples/samples/SAMEA117742037 | HREC #33118, Royal Children’s Hospital, Victoria, Australia | Frozen | CRL-1502 | https://www.atcc.org/products/crl-1502 | |||
| CEL-250605SHO-3 | 403_10-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-4 | 403_11-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-5 | 403_12-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-6 | 403_13-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-7 | 403_14-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-8 | 403_1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-9 | 403_2-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-10 | 403_3-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-11 | 403_4-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-12 | 403_5-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-13 | 403_6-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-14 | 403_7-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-15 | 403_8-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-16 | 403_9-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-17 | 403_15-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-18 | 403_16-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-19 | 403_17-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-20 | 403_18-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-21 | 171_1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-22 | 171_2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-23 | 171_3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-24 | 171_4-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-25 | 171_5-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-26 | 171_6-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-27 | 171_7-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-28 | 171_8-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-29 | 171_9-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-30 | 755_1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-31 | 755_2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-32 | 755_3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-33 | R-1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-34 | R-3-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-35 | R1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-36 | R2-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-37 | WT-1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-38 | R(080302021)-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-39 | WT-1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-40 | WT-2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-41 | WT-3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-42 | WT(08302021)-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-43 | R719C_1-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-44 | R719C_1-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-45 | R719C_2-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-46 | R719C_2-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-47 | R719C_3-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-48 | R719C_3-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-49 | R719C_1-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-50 | R719C_1-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-51 | R719C_1-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-52 | R719C_1-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-53 | R719C_2-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-54 | R719C_2-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-55 | R719C_2-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-56 | R719C_2-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-57 | R719C_3-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-58 | R719C_3-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-59 | R719C_3-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-60 | R719C_3-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250606SHO-1 | HT-1080 | Homo Sapiens | https://fairdomhub.org/sops/835 | ATCC | Human Fibrosarcoma Cell line | Kathryn Yammine | Proteomics | Vapor phase of liquid nitrogen | ccl-121 | https://www.atcc.org/products/ccl-121 | |||||||||
| CEL-250606SHO-2 | HT-1080 transfected with WT | CEL-250606SHO-1; CEL-250605SHO-1 | https://fairdomhub.org/sops/835 | Transfected Cell Line | Kathryn Yammine | Proteomics | |||||||||||||
| CEL-250606SHO-3 | HT-1080 transfected with Arg719Cys | CEL-250606SHO-1; CEL-250605SHO-2 | https://fairdomhub.org/sops/835 | Transfected Cell Line | Kathryn Yammine | Proteomics | |||||||||||||
| CEL-250606SHO-4 | Collagen extracted from chondronoids of both WT and Arg719Cys | CEL-250605SHO-1; CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | Collagen | Kathryn Yammine | SDS-Page | |||||||||||||
| CEL-250606SHO-5 | 405A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-6 | 405B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-7 | 405C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-8 | 452A | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-9 | 452B | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-10 | 452C | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-11 | 688A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-12 | 688B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-13 | 688C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-14 | 751A | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-15 | 751B | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-16 | 751C | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-17 | 985A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-18 | 985B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-19 | 985C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL |
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| D.IMG-250605SHO-200 | KY WT-1_004.TIF | 0e204b865c01962f1c2e02c38a1eb978 | https://omero.mit.edu/webclient/img_detail/25584/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-201 | KY WT-1_005.TIF | c2a18af306744ed8ee4b8f55e87ff7c1 | https://omero.mit.edu/webclient/img_detail/25576/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-202 | KY WT-1_006.TIF | 278f257d628030f5e69858029821c278 | https://omero.mit.edu/webclient/img_detail/25569/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-203 | KY WT-1_007.TIF | 9266e3c04315bf0043c660b229c7c49e | https://omero.mit.edu/webclient/img_detail/25630/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-204 | KY WT-1_008.TIF | 28169fa0eaa826b84776c74b6d0bd6a9 | https://omero.mit.edu/webclient/img_detail/25615/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-205 | KY WT-1_009.TIF | 28ad066cdbe65b7367b4c93eecbb0b12 | https://omero.mit.edu/webclient/img_detail/25602/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-206 | KY WT-1_010.TIF | 9d4d09f1d40c3c3815839f2aec663370 | https://omero.mit.edu/webclient/img_detail/25605/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-207 | KY WT-1_011.TIF | d7c0b5cbdfc9e724b184f76ff0824c02 | https://omero.mit.edu/webclient/img_detail/25617/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-208 | KY WT-1_012.TIF | 6df7d46462d12d0019bc492015cfd45d | https://omero.mit.edu/webclient/img_detail/25629/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-209 | KY WT-1_013.TIF | 279a2a2437b6f00a5d7ebba200a03c8e | https://omero.mit.edu/webclient/img_detail/25575/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-210 | KY WT-1_014.TIF | 6fa1ec264cfc51f742e6754a497b296b | https://omero.mit.edu/webclient/img_detail/25562/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-211 | KY WT-1_015.TIF | 99f2a6fffcc5a5bb831a76d0ce51bcae | https://omero.mit.edu/webclient/img_detail/25586/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-212 | KY WT-1_016.TIF | 5ceddd8c72ed8a31651b8518158bf559 | https://omero.mit.edu/webclient/img_detail/25592/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-213 | KY WT-1_017.TIF | 47501e81c0a1aa83b1ddc2e158eaa675 | https://omero.mit.edu/webclient/img_detail/25582/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-214 | KY WT-1_018.TIF | f5fd839e45b23403e4b5141f0cc68743 | https://omero.mit.edu/webclient/img_detail/25610/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-215 | KY WT-1_019.TIF | 7d9f64aa12f0db9dfce6003852f18d66 | https://omero.mit.edu/webclient/img_detail/25599/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-216 | KY WT-1_020.TIF | a02bdbd3e0a844697d411e08828b4aaf | https://omero.mit.edu/webclient/img_detail/25578/?dataset=1952 | CEL-250605SHO-39 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-217 | KY WT-2_001.TIF | 0807109faae29c7c3e3e5a189eb2da6e | https://omero.mit.edu/webclient/img_detail/25567/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-218 | KY WT-2_002.TIF | 0c53fbcd86486f1480974e3fa1ea942c | https://omero.mit.edu/webclient/img_detail/25622/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-219 | KY WT-2_003.TIF | b188d6d91799665268c70189cd0917d0 | https://omero.mit.edu/webclient/img_detail/25619/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-220 | KY WT-2_004.TIF | 96737859a10894fdfa4a7dd19b46d915 | https://omero.mit.edu/webclient/img_detail/25603/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-221 | KY WT-2_005.TIF | 7f8174a57a2f43c9a68a987d80a1b19f | https://omero.mit.edu/webclient/img_detail/25596/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-222 | KY WT-2_006.TIF | b796627baf1f727b8fb8706677cd0128 | https://omero.mit.edu/webclient/img_detail/25598/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-223 | KY WT-2_007.TIF | d959fa6584a1c8d9625311d3f93e3547 | https://omero.mit.edu/webclient/img_detail/25588/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-224 | KY WT-2_008.TIF | 6bdd97d4bc5541141330d2db05690f3d | https://omero.mit.edu/webclient/img_detail/25585/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-225 | KY WT-2_009.TIF | b2b360b08f45ed816d2c7a34ec537296 | https://omero.mit.edu/webclient/img_detail/25571/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-226 | KY WT-2_010.TIF | 9a28af6f8f47fca47763494824313226 | https://omero.mit.edu/webclient/img_detail/25572/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-227 | KY WT-2_011.TIF | da15dd1ba240dc7d7adbef1a6a6825cf | https://omero.mit.edu/webclient/img_detail/25579/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-228 | KY WT-2_012.TIF | c010b290c0ad6a7cfe9d82dc23e597ac | https://omero.mit.edu/webclient/img_detail/25580/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-229 | KY WT-2_013.TIF | 2a4046c733b96211c3eb0b5847b0c5a6 | https://omero.mit.edu/webclient/img_detail/25609/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-230 | KY WT-2_014.TIF | 5b064b6648e98007e8235c0b1e67accd | https://omero.mit.edu/webclient/img_detail/25597/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-231 | KY WT-2_015.TIF | 02f720e5d6a954a91de472f97d8c82e8 | https://omero.mit.edu/webclient/img_detail/25623/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-232 | KY WT-2_016.TIF | 2af4e17ccb8686831bd06223ec06b9db | https://omero.mit.edu/webclient/img_detail/25616/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-233 | KY WT-2_017.TIF | d35c831dc2e1890e5a02cb9feff92dcf | https://omero.mit.edu/webclient/img_detail/25574/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-234 | KY WT-2_018.TIF | 4b29ad89930e1e55eb985dcf0c4e63d5 | https://omero.mit.edu/webclient/img_detail/25564/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-235 | KY WT-2_019.TIF | e96eeb33b1e51e7eeb37ecf48d832d80 | https://omero.mit.edu/webclient/img_detail/25566/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-236 | KY WT-2_020.TIF | 2e8303b24742cff3ad4baf3ff5db89b3 | https://omero.mit.edu/webclient/img_detail/25628/?dataset=1952 | CEL-250605SHO-40 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-237 | KY WT-3_001.TIF | 7f73ae863848402cfb8f53f17c28e5b4 | https://omero.mit.edu/webclient/img_detail/25600/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-238 | KY WT-3_002.TIF | a119d76c88e714ec0b13b886717e5356 | https://omero.mit.edu/webclient/img_detail/25589/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-239 | KY WT-3_003.TIF | ec9c70340294db005ef0158c6818a7e9 | https://omero.mit.edu/webclient/img_detail/25581/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-240 | KY WT-3_004.TIF | 1f7acc4a631927d295362081969927d1 | https://omero.mit.edu/webclient/img_detail/25570/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-241 | KY WT-3_005.TIF | ee9d1810b000cf4bd40b907d0a6eec0f | https://omero.mit.edu/webclient/img_detail/25563/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-242 | KY WT-3_006.TIF | 1d4607cab4438f36b67b1145d939933f | https://omero.mit.edu/webclient/img_detail/25624/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-243 | KY WT-3_007.TIF | 5e1b1e11e05dfd51f7fc1746a57fef66 | https://omero.mit.edu/webclient/img_detail/25620/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-244 | KY WT-3_008.TIF | 567f0fbbe38983d216e773b323ff7467 | https://omero.mit.edu/webclient/img_detail/25618/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-245 | KY WT-3_009.TIF | 5c9aaab26cb9ad28a90339818bf9c43a | https://omero.mit.edu/webclient/img_detail/25608/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-246 | KY WT-3_010.TIF | a00988cebee1aa4487ebcd71ffb9779e | https://omero.mit.edu/webclient/img_detail/25621/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-247 | KY WT-3_011.TIF | 2a4ce779fa1502c0907ce819a00f442b | https://omero.mit.edu/webclient/img_detail/25612/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-248 | KY WT-3_012.TIF | dc58bf5b4b957e9edef8d2adb3a274f1 | https://omero.mit.edu/webclient/img_detail/25573/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-249 | KY WT-3_013.TIF | fa55c9f16dd9713198c6e54f5ae02db1 | https://omero.mit.edu/webclient/img_detail/25577/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-250 | KY WT-3_014.TIF | 31447d7fc79003b6f1545103a08c5ced | https://omero.mit.edu/webclient/img_detail/25568/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-251 | KY WT-3_015.TIF | 88574af1fc9fdf485756b3c5f05aa196 | https://omero.mit.edu/webclient/img_detail/25591/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-252 | KY WT-3_016.TIF | 59a44d853bc54f7b70701dbd06ce1c7c | https://omero.mit.edu/webclient/img_detail/25583/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-253 | KY WT-3_017.TIF | e170d3a11c7405a699cf384fec3e9672 | https://omero.mit.edu/webclient/img_detail/25604/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-254 | KY WT-3_018.TIF | 97f367c50d14db993c6e0beaa99ca71d | https://omero.mit.edu/webclient/img_detail/25593/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-255 | KY WT-3_019.TIF | a31f534c25074a9f222d32a160346b64 | https://omero.mit.edu/webclient/img_detail/25627/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-256 | KY WT-3_020.TIF | f29463afa83ab77391c65e0ab6c53b47 | https://omero.mit.edu/webclient/img_detail/25587/?dataset=1952 | CEL-250605SHO-41 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-257 | WT (08302021)_001.TIF | ae2e1dc901107c3065d813390ee992bb | https://omero.mit.edu/webclient/img_detail/25613/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-258 | WT (08302021)_002.TIF | 30372e51ba64eb9ebdfbcf7e2d98a214 | https://omero.mit.edu/webclient/img_detail/25607/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-259 | WT (08302021)_003.TIF | 864ac9d510b0d43e8a9f579fdecffb8a | https://omero.mit.edu/webclient/img_detail/25590/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-260 | WT (08302021)_004.TIF | e14e539bf58cdfc63830f17d0ab48b3b | https://omero.mit.edu/webclient/img_detail/25595/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-261 | WT (08302021)_005.TIF | cfc58eb9ff0655be29b8842b054840c6 | https://omero.mit.edu/webclient/img_detail/25606/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-262 | WT (08302021)_006.TIF | 77504b37d27d5bdf86f0b1eebee3c786 | https://omero.mit.edu/webclient/img_detail/25614/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-263 | WT (08302021)_007.TIF | bcc7b7613af2d192bbf906a35c8ccd2a | https://omero.mit.edu/webclient/img_detail/25625/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-264 | WT (08302021)_008.TIF | c38a08f476b2efcd536e1bb94bb841ab | https://omero.mit.edu/webclient/img_detail/25626/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-265 | WT (08302021)_009.TIF | 07bc79e2de40836ba0692ad5767b9d86 | https://omero.mit.edu/webclient/img_detail/25565/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-266 | WT (08302021)_010.TIF | 2ae6c6d997e2a285b08f91882fef292d | https://omero.mit.edu/webclient/img_detail/25611/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-267 | WT (08302021)_011.TIF | e32ae281f3bf1168d77ed0e08955be37 | https://omero.mit.edu/webclient/img_detail/25601/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-268 | WT (08302021)_012.TIF | 3ca4af3d58ead0986ad0448f82d31f47 | https://omero.mit.edu/webclient/img_detail/25594/?dataset=1952 | CEL-250605SHO-42 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250606SHO-1 | 405A bf_0001.jpg | de25d4dfa54fc692156883ae011bcc85 | https://omero.mit.edu/webclient/img_detail/25713/?dataset=1954 | CEL-250606SHO-5 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-2 | 405A bf_0002.jpg | bdac5c57001ce3fd1e9951a382fc6d29 | https://omero.mit.edu/webclient/img_detail/25749/?dataset=1954 | CEL-250606SHO-5 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-3 | 405A_0001 2.jpg | b0bcfaf56150e40afff8529c8e5b8d77 | https://omero.mit.edu/webclient/img_detail/25647/?dataset=1954 | CEL-250606SHO-5 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-4 | 405A_0001_fitc.jpg | b3276946663b6f036b392e84c16176c5 | https://omero.mit.edu/webclient/img_detail/25692/?dataset=1954 | CEL-250606SHO-5 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-5 | 405A_0001_fitc.tiff | 7b2b6100e0edddc326c2243ef8596fbf | https://omero.mit.edu/webclient/img_detail/25642/?dataset=1954 | CEL-250606SHO-5 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-6 | 405A_0002 2.jpg | adc9b18493427cec18f301028c883e89 | https://omero.mit.edu/webclient/img_detail/25675/?dataset=1954 | CEL-250606SHO-5 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-7 | 405A_0002_fitc.jpg | 695a51e516aa20c0370fc0695bddd37e | https://omero.mit.edu/webclient/img_detail/25759/?dataset=1954 | CEL-250606SHO-5 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-8 | 405A_0002_fitc.tiff | 0faf8d380d162b42a88991d193c54370 | https://omero.mit.edu/webclient/img_detail/25682/?dataset=1954 | CEL-250606SHO-5 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-9 | 405B bf_0001.jpg | 2bf061baff7b4c89a7a0c6e96a518d9a | https://omero.mit.edu/webclient/img_detail/25690/?dataset=1954 | CEL-250606SHO-6 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-10 | 405B bf_0002.jpg | 5ba36d6c5ccfe6723f0529d205ac5baf | https://omero.mit.edu/webclient/img_detail/25746/?dataset=1954 | CEL-250606SHO-6 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-11 | 405B_0001 2.jpg | 1cb59da1c8cc115ce8b97850648da7ad | https://omero.mit.edu/webclient/img_detail/25730/?dataset=1954 | CEL-250606SHO-6 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-12 | 405B_0001_fitc.jpg | d3bcf81853684c1d2976fa76c2737193 | https://omero.mit.edu/webclient/img_detail/25657/?dataset=1954 | CEL-250606SHO-6 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-13 | 405B_0001_fitc.tiff | 91350e6dd99e9e6cfa199d3cff0e9fc7 | https://omero.mit.edu/webclient/img_detail/25679/?dataset=1954 | CEL-250606SHO-6 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-14 | 405B_0002 2.jpg | 8b939d8b89e2625088c7e2f35e1afd83 | https://omero.mit.edu/webclient/img_detail/25649/?dataset=1954 | CEL-250606SHO-6 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-15 | 405B_0002_fitc.jpg | cca1e1bb38a991306f51710e155cbea3 | https://omero.mit.edu/webclient/img_detail/25747/?dataset=1954 | CEL-250606SHO-6 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-16 | 405B_0002_fitc.tiff | e7e3e3686d308cac65fa9ea5a74a1b28 | https://omero.mit.edu/webclient/img_detail/25752/?dataset=1954 | CEL-250606SHO-6 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-17 | 405C bf_0001.jpg | 158181c6beed22810fc7cb2a476b1eb1 | https://omero.mit.edu/webclient/img_detail/25693/?dataset=1954 | CEL-250606SHO-7 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-18 | 405C bf_0002.jpg | 149f5eaeedba76de14ac05be98ea0313 | https://omero.mit.edu/webclient/img_detail/25758/?dataset=1954 | CEL-250606SHO-7 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-19 | 405C_0001 2.jpg | 1a14aba98b1c3b73f65a3abe51be0f79 | https://omero.mit.edu/webclient/img_detail/25672/?dataset=1954 | CEL-250606SHO-7 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-20 | 405C_0001_fitc.jpg | 5dccc97b9f8122945038c69a4e4a22d1 | https://omero.mit.edu/webclient/img_detail/25706/?dataset=1954 | CEL-250606SHO-7 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-21 | 405C_0001_fitc.tiff | ddc8fbcecf208f3c2eb3f2e22d345c62 | https://omero.mit.edu/webclient/img_detail/25723/?dataset=1954 | CEL-250606SHO-7 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-22 | 405C_0002 2.jpg | 2a95708bca5963f5e5e488cb41008fa9 | https://omero.mit.edu/webclient/img_detail/25688/?dataset=1954 | CEL-250606SHO-7 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-23 | 405C_0002_fitc.jpg | 82b88c9df1c7e8f10ba13f1902e7876c | https://omero.mit.edu/webclient/img_detail/25726/?dataset=1954 | CEL-250606SHO-7 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-24 | 405C_0002_fitc.tiff | d74ca86e6e13e8674c9ab7138be67140 | https://omero.mit.edu/webclient/img_detail/25694/?dataset=1954 | CEL-250606SHO-7 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-25 | 452A bf_0001.jpg | 57015c828e0e556f1bcd4c3268a158c5 | https://omero.mit.edu/webclient/img_detail/25701/?dataset=1954 | CEL-250606SHO-8 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-26 | 452A bf_0002.jpg | 99f4eacddf1214b90aed7f13700ecbb2 | https://omero.mit.edu/webclient/img_detail/25753/?dataset=1954 | CEL-250606SHO-8 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-27 | 452A_0001 2.jpg | 6f56bfcb6fe188097303ea1eabeb49ff | https://omero.mit.edu/webclient/img_detail/25674/?dataset=1954 | CEL-250606SHO-8 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-28 | 452A_0001 bf.jpg | e378da3ae5e697d4b761f9fc7d7c5e47 | https://omero.mit.edu/webclient/img_detail/25668/?dataset=1954 | CEL-250606SHO-8 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | ||||
| D.IMG-250606SHO-29 | 452A_0001_fitc.jpg | 4b15815a1e6eca9b10fbd67412d31486 | https://omero.mit.edu/webclient/img_detail/25714/?dataset=1954 | CEL-250606SHO-8 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-30 | 452A_0001_fitc.tiff | 6346eb96157e9687045ad9feaf63ad39 | https://omero.mit.edu/webclient/img_detail/25683/?dataset=1954 | CEL-250606SHO-8 | Kathryn Yammine | FITC | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App | |||
| D.IMG-250606SHO-31 | 452A_0002 2.jpg | 5516a98467ccb49131acf04eab7e15d7 | https://omero.mit.edu/webclient/img_detail/25658/?dataset=1954 | CEL-250606SHO-8 | Kathryn Yammine | TUNEL | https://fairdomhub.org/sops/834 | ECHO Revolve 4 fluorescence microscope | ECHO Pro App |
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| UID | Name | Scientist | Protocol | Notes | Lab | Parent | Type | StorageType | Volume | VolumeUnits | ExtractionMethod | QC_Instrument |
| RNA-250605SHO-1 | D21-157037 390 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-1_e | Shoulders Lab | CEL-250605SHO-43 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-2 | D21-157038 391 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-2_e | Shoulders Lab | CEL-250605SHO-44 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-3 | D21-157039 675 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-1_e | Shoulders Lab | CEL-250605SHO-45 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-4 | D21-157040 676 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-2_e | Shoulders Lab | CEL-250605SHO-46 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-5 | D21-157041 972 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-1_e | Shoulders Lab | CEL-250605SHO-47 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-6 | D21-157042 973 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-2_e | Shoulders Lab | CEL-250605SHO-48 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-7 | D21-157085 406 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-1_l | Shoulders Lab | CEL-250605SHO-49 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-8 | D21-157086 407 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-2_l | Shoulders Lab | CEL-250605SHO-50 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-9 | D21-157087 408 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-3_l | Shoulders Lab | CEL-250605SHO-51 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-10 | D21-157088 409 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-4_l | Shoulders Lab | CEL-250605SHO-52 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-11 | D21-157089 691 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-1_l | Shoulders Lab | CEL-250605SHO-53 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-12 | D21-157090 692 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-2_l | Shoulders Lab | CEL-250605SHO-54 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-13 | D21-157091 693 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-3_l | Shoulders Lab | CEL-250605SHO-55 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-14 | D21-157092 694 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-4_l | Shoulders Lab | CEL-250605SHO-56 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-15 | D21-157093 988 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-1_l | Shoulders Lab | CEL-250605SHO-57 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-16 | D21-157094 989 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-2_l | Shoulders Lab | CEL-250605SHO-58 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-17 | D21-157095 990 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-3_l | Shoulders Lab | CEL-250605SHO-59 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-18 | D21-157096 991 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-4_l | Shoulders Lab | CEL-250605SHO-60 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
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| UID | Name | Protocol | Scientist | Parent | Type | NumPrepCycles | Barcode | LibraryPrepProtocol | QC_Instrument | VolumeUnits | ExtractionMethod |
| DNA-250605SHO-1 | D21-157037 390 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-1 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-2 | D21-157038 391 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-2 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-3 | D21-157039 675 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-3 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-4 | D21-157040 676 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-4 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-5 | D21-157041 972 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-5 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-6 | D21-157042 973 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-6 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-7 | D21-157085 406 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-7 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-8 | D21-157086 407 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-8 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-9 | D21-157087 408 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-9 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-10 | D21-157088 409 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-10 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-11 | D21-157089 691 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-11 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-12 | D21-157090 692 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-12 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-13 | D21-157091 693 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-13 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-14 | D21-157092 694 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-14 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-15 | D21-157093 988 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-15 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-16 | D21-157094 989 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-16 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-17 | D21-157095 990 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-17 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-18 | D21-157096 991 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-18 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
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| UID | File_PrimaryData | File_SecondaryData | Protocol | Scientist | Link_PrimaryData | Link_SecondaryData | Checksum_PrimaryData | Checksum_SecondaryData | Parent | DataType | SequencingType | Sequencer | F_bp | R_bp | LibraryStrategy | LibrarySource | LibrarySelection | LibraryDesign | Accession | Repository |
| D.SEQ-250605SHO-1 | 210322Sho_D21-157037_sequence_1.fastq.gz | 210322Sho_D21-157037_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | c0e07491f6e7d6af34f026073eb9a57f | bac4b5daf38ac3d2d038f67e5c223315 | DNA-250605SHO-1 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-2 | 210322Sho_D21-157038_sequence_1.fastq.gz | 210322Sho_D21-157038_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | a4709cbb3e6e102eb053d6f3294165d9 | c5fc1ac05da3a03a987ff3aa2f2e196f | DNA-250605SHO-2 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-3 | 210322Sho_D21-157039_sequence_1.fastq.gz | 210322Sho_D21-157039_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 4d3b45e9903a9e951e43ef72db67af04 | 0acf0f08fd1fcc6da9104b670e1a7437 | DNA-250605SHO-3 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-4 | 210322Sho_D21-157040_sequence_1.fastq.gz | 210322Sho_D21-157040_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 6e4fc3cbf4d0b9859308d9163f085d60 | 21c78e73b554f07e84e2878991957571 | DNA-250605SHO-4 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-5 | 210322Sho_D21-157041_sequence_1.fastq.gz | 210322Sho_D21-157041_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 3c36fbf1c1b95828a01560eac2862891 | 1ef4688cc99c5a3e74cd9d94c20af0cd | DNA-250605SHO-5 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-6 | 210322Sho_D21-157042_sequence_1.fastq.gz | 210322Sho_D21-157042_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | df105ccbc434754e17e91d854807d9ea | dec825788163acd58691b7b0c3fed5af | DNA-250605SHO-6 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-7 | 210322Sho_D21-157085_sequence_1.fastq.gz | 210322Sho_D21-157085_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 728d6d8b669008fdaf186683cb06440c | d6b2f86a6e90605ec1ba8a94b6401e9c | DNA-250605SHO-7 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-8 | 210322Sho_D21-157086_sequence_1.fastq.gz | 210322Sho_D21-157086_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 381db7b85fba07441d1ba30a2bd64d73 | 0c2d539c1305602d49d69c48c38dbb88 | DNA-250605SHO-8 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-9 | 210322Sho_D21-157087_sequence_1.fastq.gz | 210322Sho_D21-157087_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 95484928f4c59ffef15dd7e4d43414cc | ccfb5a71195370e4012565f754ed98d0 | DNA-250605SHO-9 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-10 | 210322Sho_D21-157088_sequence_1.fastq.gz | 210322Sho_D21-157088_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 176c8b2ab0552abe4f4a9f5ec6e37748 | de8748f85a72bf769dadde86e043cb80 | DNA-250605SHO-10 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-11 | 210322Sho_D21-157089_sequence_1.fastq.gz | 210322Sho_D21-157089_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 2d7de05b255b6b76968f9a558c02112c | 832d4ff411b436f52a29a6f5634e3762 | DNA-250605SHO-11 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-12 | 210322Sho_D21-157090_sequence_1.fastq.gz | 210322Sho_D21-157090_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 53724aa13cef013df38d3f01ffe39e74 | 83f0c1c414a80210bec6a3305c606070 | DNA-250605SHO-12 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-13 | 210322Sho_D21-157091_sequence_1.fastq.gz | 210322Sho_D21-157091_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 9ed163f950d38fc7e40bc79ebacf0e9d | 1d11ed4df566d978918d09100bdcde3b | DNA-250605SHO-13 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-14 | 210322Sho_D21-157092_sequence_1.fastq.gz | 210322Sho_D21-157092_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | f936ab7a7940ffa21a144f8494a2e73f | eb4069b48d1139a73f6a6c218ad0d204 | DNA-250605SHO-14 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-15 | 210322Sho_D21-157093_sequence_1.fastq.gz | 210322Sho_D21-157093_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 3586b15922543f6f36912e8fa748c5e3 | b3d62d0880f7d8b0bee88c4cd1f57475 | DNA-250605SHO-15 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-16 | 210322Sho_D21-157094_sequence_1.fastq.gz | 210322Sho_D21-157094_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 4490c084a27f8d30f376f1e1743562bf | ac88d43e1587bda2517e7d9f3b27a4d9 | DNA-250605SHO-16 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-17 | 210322Sho_D21-157095_sequence_1.fastq.gz | 210322Sho_D21-157095_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | b56fae3eccd8c435b6517b5ba047e6f5 | 54b33fac09ac0796e2bca39016bc65ae | DNA-250605SHO-17 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-18 | 210322Sho_D21-157096_sequence_1.fastq.gz | 210322Sho_D21-157096_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 05d5a4edd8416cc73c85c0bca0387846 | 02414dcf8597c51d78c7123cde20f882 | DNA-250605SHO-18 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
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| UID | File_PrimaryData | Link_PrimaryData | Scientist | Parent | Protocol | ReferenceGenome | Checksum_PrimaryData | DataType | Notes | Software | Accession |
| A.GEX-250605SHO-1 | GSE271431_Gene_expression_counts_R219C.csv.gz | https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE271431&format=file&file=GSE271431%5FGene%5Fexpression%5Fcounts%5FR219C%2Ecsv%2Egz | Vincent Butty | D.SEQ-250605SHO-1; D.SEQ-250605SHO-2; D.SEQ-250605SHO-3; D.SEQ-250605SHO-4; D.SEQ-250605SHO-5; D.SEQ-250605SHO-6; D.SEQ-250605SHO-7; D.SEQ-250605SHO-8; D.SEQ-250605SHO-9; D.SEQ-250605SHO-10; D.SEQ-250605SHO-11; D.SEQ-250605SHO-12; D.SEQ-250605SHO-13; D.SEQ-250605SHO-14; D.SEQ-250605SHO-15; D.SEQ-250605SHO-16; D.SEQ-250605SHO-17; D.SEQ-250605SHO-18 | https://fairdomhub.org/sops/833 | GRCh38/ENSEMBL 101 | 7e2c584506756d0344848ba29f45ec60 | CSV | Raw gene level counts | Salmon v1.3, DESeq2, GSEA v4.1, tximport | GSE271431 |
| A.GEX-250605SHO-2 | GSE271431_Gene_expression_log2TPMs_R219C.csv.gz | https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE271431&format=file&file=GSE271431%5FGene%5Fexpression%5Flog2TPMs%5FR219C%2Ecsv%2Egz | Vincent Butty | D.SEQ-250605SHO-1; D.SEQ-250605SHO-2; D.SEQ-250605SHO-3; D.SEQ-250605SHO-4; D.SEQ-250605SHO-5; D.SEQ-250605SHO-6; D.SEQ-250605SHO-7; D.SEQ-250605SHO-8; D.SEQ-250605SHO-9; D.SEQ-250605SHO-10; D.SEQ-250605SHO-11; D.SEQ-250605SHO-12; D.SEQ-250605SHO-13; D.SEQ-250605SHO-14; D.SEQ-250605SHO-15; D.SEQ-250605SHO-16; D.SEQ-250605SHO-17; D.SEQ-250605SHO-18 | https://fairdomhub.org/sops/833 | GRCh38/ENSEMBL 101 | 83b17aafbe1c1bc1713ef34d8575b6aa | CSV | log2 transformed transcripts per million values | Salmon v1.3, DESeq2, GSEA v4.1, tximport | GSE271431 |
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| UID | File_PrimaryData | Link_PrimaryData | Parent | SampleCreationDate | Protocol | Method | Instrument | Scientist | Repository | RepositoryID | PRIDE_FileType | PRIDE_ExperimentType | PRIDE_Modification | PRIDE_Quantification | MetadataFile | ScanFile | Software | Identification |
| D.MSP-250606SHO-1 | f.MSV000096151/raw/rs240609_1505_KY_10plex_01.raw | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | CEL-250606SHO-2; CEL-250606SHO-3 | 2024-06-09T0:0:0+0000 | https://fairdomhub.org/sops/835 | LC-MS/MS | Orbitrap Eclipse Tribrid (Thermo Scientific) | Kathryn Yammine | MassIVE | MSV000096151 | Raw | Shotgun proteomics | Oxidation | TMTpro16plex | f.MSV000096151/ccms_parameters/params.xml | f.MSV000096151/ccms_metadata/ccms_peak/rs240609_1505_KY_10plex_01.mzML.scans | Proteome Discoverer 2.4 | SEQUEST |
| D.MSP-250606SHO-2 | f.MSV000096151/peak/rs240609_1505_KY_10plex_01.mzML | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | CEL-250606SHO-2; CEL-250606SHO-3 | 2024-06-09T0:0:0+0000 | https://fairdomhub.org/sops/835 | LC-MS/MS | Orbitrap Eclipse Tribrid (Thermo Scientific) | Kathryn Yammine | MassIVE | MSV000096151 | Peak | Shotgun proteomics | Oxidation | TMTpro16plex | f.MSV000096151/ccms_parameters/params.xml | f.MSV000096151/ccms_metadata/ccms_peak/rs240609_1505_KY_10plex_01.mzML.scans | Proteome Discoverer 2.4 | SEQUEST |
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| UID | File_PrimaryData | Link_PrimaryData | Protocol | Parent | QuantificationMethod | Scientist | PRIDE_FileType | ||
| A.MSP-250606SHO-1 | f.MSV000096151/result/rs240609_1505_KY_10plex_01.mzid | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | RESULT | ||
| A.MSP-250606SHO-2 | f.MSV000096151/ccms_result/rs240609_1505_KY_10plex_01.mzTab | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | RESULT | ||
| A.MSP-250606SHO-3 | f.MSV000096151/ccms_statistics/statistics.tsv | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | STATISTICS | ||
