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| UID | Name | Parent | Mutation | Species | CellLine | Protocol | Source | Type | GrowthConditions | Media | Passages | Scientist | RepositoryLink | BioSampleAccession | EthicsApproval | AssayType | StorageType | Catalog# | Link_Catalog# |
| CEL-250605SHO-1 | MCRIi019-A-WT | WildType | Homo Sapiens | MCRIi019-A | https://fairdomhub.org/sops/832 | ATCC Fibroblast line 1502 | Induced Pluripotent Stem Cells (iPSC) | Feeder-free on Matrigel-coated 6-well plates | Essential 8 (E8) medium | 1:6 every 3–4 days using 0.5 mM EDTA in PBS | Kathryn Yammine | https://hpscreg.eu/cell-line/MCRIi019-A | https://www.ebi.ac.uk/biosamples/samples/SAMEA117742037 | HREC #33118, Royal Children’s Hospital, Victoria, Australia | Frozen | CRL-1502 | https://www.atcc.org/products/crl-1502 | ||
| CEL-250605SHO-2 | MCRIi019-A-6 | CEL-250605SHO-1 | CRISPR/Cas9 editing to introduce COL2A1 c.2155C>T (p.Arg719Cys) | MCRIi019-A | https://fairdomhub.org/sops/832 | Induced Pluripotent Stem Cells (iPSC) | Feeder-free on Matrigel-coated 6-well plates | Essential 8 (E8) medium | 1:6 every 3–4 days using 0.5 mM EDTA in PBS | Kathryn Yammine | https://hpscreg.eu/cell-line/MCRIi019-A | https://www.ebi.ac.uk/biosamples/samples/SAMEA117742037 | HREC #33118, Royal Children’s Hospital, Victoria, Australia | Frozen | CRL-1502 | https://www.atcc.org/products/crl-1502 | |||
| CEL-250605SHO-3 | 403_10-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-4 | 403_11-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-5 | 403_12-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-6 | 403_13-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-7 | 403_14-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-8 | 403_1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-9 | 403_2-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-10 | 403_3-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-11 | 403_4-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-12 | 403_5-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-13 | 403_6-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-14 | 403_7-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-15 | 403_8-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-16 | 403_9-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-17 | 403_15-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-18 | 403_16-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-19 | 403_17-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-20 | 403_18-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-21 | 171_1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-22 | 171_2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-23 | 171_3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-24 | 171_4-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-25 | 171_5-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-26 | 171_6-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-27 | 171_7-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-28 | 171_8-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-29 | 171_9-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-30 | 755_1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-31 | 755_2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-32 | 755_3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | IHC | |||||||||||
| CEL-250605SHO-33 | R-1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-34 | R-3-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-35 | R1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-36 | R2-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-37 | WT-1-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-38 | R(080302021)-Chondronoid-Arg719Cys | CEL-250605SHO-2 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-39 | WT-1-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-40 | WT-2-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-41 | WT-3-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-42 | WT(08302021)-Chondronoid-WT | CEL-250605SHO-1 | https://fairdomhub.org/sops/832 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Kathryn Yammine | TEM | |||||||||||
| CEL-250605SHO-43 | R719C_1-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-44 | R719C_1-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-45 | R719C_2-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-46 | R719C_2-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-47 | R719C_3-1_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-48 | R719C_3-2_e | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Early (34 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-49 | R719C_1-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-50 | R719C_1-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-51 | R719C_1-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-52 | R719C_1-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-53 | R719C_2-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-54 | R719C_2-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-55 | R719C_2-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-56 | R719C_2-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-57 | R719C_3-1_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-58 | R719C_3-2_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-59 | R719C_3-3_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250605SHO-60 | R719C_3-4_l | CEL-250605SHO-2 | https://fairdomhub.org/sops/833 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | RNAseq | ||||||||||
| CEL-250606SHO-1 | HT-1080 | Homo Sapiens | https://fairdomhub.org/sops/835 | ATCC | Human Fibrosarcoma Cell line | Kathryn Yammine | Proteomics | Vapor phase of liquid nitrogen | ccl-121 | https://www.atcc.org/products/ccl-121 | |||||||||
| CEL-250606SHO-2 | HT-1080 transfected with WT | CEL-250606SHO-1; CEL-250605SHO-1 | https://fairdomhub.org/sops/835 | Transfected Cell Line | Kathryn Yammine | Proteomics | |||||||||||||
| CEL-250606SHO-3 | HT-1080 transfected with Arg719Cys | CEL-250606SHO-1; CEL-250605SHO-2 | https://fairdomhub.org/sops/835 | Transfected Cell Line | Kathryn Yammine | Proteomics | |||||||||||||
| CEL-250606SHO-4 | Collagen extracted from chondronoids of both WT and Arg719Cys | CEL-250605SHO-1; CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | Collagen | Kathryn Yammine | SDS-Page | |||||||||||||
| CEL-250606SHO-5 | 405A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-6 | 405B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-7 | 405C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-8 | 452A | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-9 | 452B | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-10 | 452C | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-11 | 688A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-12 | 688B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-13 | 688C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-14 | 751A | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-15 | 751B | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-16 | 751C | CEL-250605SHO-1 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-17 | 985A | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-18 | 985B | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL | ||||||||||
| CEL-250606SHO-19 | 985C | CEL-250605SHO-2 | https://fairdomhub.org/sops/834 | iPSC-derived chondronoid | 3D pellet culture; orbital shaking; non-adherent plates (60 rpm, 24 days) | APEL2 + 5% PFHM II + 200 µM sodium ascorbate + Pen/Strep (no FGF2 after day 20) | Late (44 Days) | Kathryn Yammine | TUNEL |
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| D.IMG-250605SHO-100 | 171_2_w1Conf 561 CY3.TIF | d57ee769648d5d91caa0d5499345a685 | https://omero.mit.edu/webclient/img_detail/25487/?dataset=1951 | CEL-250605SHO-22 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-101 | 171_2_w2Conf 405 DAPI.TIF | dfbb63e5b3c6a04293ed71b82d6e3185 | https://omero.mit.edu/webclient/img_detail/25487/?dataset=1951 | CEL-250605SHO-22 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-102 | 171_2_w3Conf 488 GFP.TIF | 1ce069b10ac3ed24b5a39e585d8a7135 | https://omero.mit.edu/webclient/img_detail/25487/?dataset=1951 | CEL-250605SHO-22 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-103 | 171_3_w1Conf 561 CY3.TIF | a849cd22e221d1af36924a2da72beb15 | https://omero.mit.edu/webclient/img_detail/25483/?dataset=1951 | CEL-250605SHO-23 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-104 | 171_3_w2Conf 405 DAPI.TIF | 75821b52be3d48e9b5bceea3e98a24f8 | https://omero.mit.edu/webclient/img_detail/25483/?dataset=1951 | CEL-250605SHO-23 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-105 | 171_3_w3Conf 488 GFP.TIF | cd7263a369625ddc9b37163cb0df274d | https://omero.mit.edu/webclient/img_detail/25483/?dataset=1951 | CEL-250605SHO-23 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-106 | 171_4_w1Conf 561 CY3.TIF | 1c53a84daa03b5ea35359c3d74bb50d3 | https://omero.mit.edu/webclient/img_detail/25484/?dataset=1951 | CEL-250605SHO-24 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-107 | 171_4_w2Conf 405 DAPI.TIF | 943977ba25537202fdc213e98332166e | https://omero.mit.edu/webclient/img_detail/25484/?dataset=1951 | CEL-250605SHO-24 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-108 | 171_4_w3Conf 488 GFP.TIF | 8a63390c2d81f11fb6a72d8eb742b009 | https://omero.mit.edu/webclient/img_detail/25484/?dataset=1951 | CEL-250605SHO-24 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-109 | 171_5_w1Conf 561 CY3.TIF | 499d58c7473384eda6714975dbea6503 | https://omero.mit.edu/webclient/img_detail/25494/?dataset=1951 | CEL-250605SHO-25 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-110 | 171_5_w2Conf 405 DAPI.TIF | d64594c8bc9434a0c658807def6d8281 | https://omero.mit.edu/webclient/img_detail/25494/?dataset=1951 | CEL-250605SHO-25 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-111 | 171_5_w3Conf 488 GFP.TIF | 255a0659fe163db55d86a9ae67b38434 | https://omero.mit.edu/webclient/img_detail/25494/?dataset=1951 | CEL-250605SHO-25 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-112 | 171_6_w1Conf 561 CY3.TIF | cdf47899202acd0adc90d25203022f96 | https://omero.mit.edu/webclient/img_detail/25490/?dataset=1951 | CEL-250605SHO-26 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-113 | 171_6_w2Conf 405 DAPI.TIF | caff7c8856c0b0ce54bb93e355319475 | https://omero.mit.edu/webclient/img_detail/25490/?dataset=1951 | CEL-250605SHO-26 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-114 | 171_6_w3Conf 488 GFP.TIF | d54fc1533e5e9d5e6ca6bb195f7c1a60 | https://omero.mit.edu/webclient/img_detail/25490/?dataset=1951 | CEL-250605SHO-26 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-115 | 171_7_w1Conf 561 CY3.TIF | fb300ac254bda31d36422807a187f555 | https://omero.mit.edu/webclient/img_detail/25493/?dataset=1951 | CEL-250605SHO-27 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-116 | 171_7_w2Conf 405 DAPI.TIF | 3c279b4d0b9e605a4e39a96011814425 | https://omero.mit.edu/webclient/img_detail/25493/?dataset=1951 | CEL-250605SHO-27 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-117 | 171_7_w3Conf 488 GFP.TIF | d37d32a8d59533540581034cd9374a55 | https://omero.mit.edu/webclient/img_detail/25493/?dataset=1951 | CEL-250605SHO-27 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-118 | 171_8_w1Conf 561 CY3.TIF | f32102c794cc39eca18a239326f34f43 | https://omero.mit.edu/webclient/img_detail/25492/?dataset=1951 | CEL-250605SHO-28 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-119 | 171_8_w2Conf 405 DAPI.TIF | 1726886749f9bbc4a24a806777e10150 | https://omero.mit.edu/webclient/img_detail/25492/?dataset=1951 | CEL-250605SHO-28 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-120 | 171_8_w3Conf 488 GFP.TIF | d322b7eb7fb40c741a42ce232eb49727 | https://omero.mit.edu/webclient/img_detail/25492/?dataset=1951 | CEL-250605SHO-28 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-121 | 171_9_w1Conf 561 CY3.TIF | 39ab7d93723be83ec5b373a860df9b50 | https://omero.mit.edu/webclient/img_detail/25486/?dataset=1951 | CEL-250605SHO-29 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-122 | 171_9_w2Conf 405 DAPI.TIF | bd47bf29719a2de3bed57e11fda67d39 | https://omero.mit.edu/webclient/img_detail/25486/?dataset=1951 | CEL-250605SHO-29 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-123 | 171_9_w3Conf 488 GFP.TIF | 31d0a5ac8fbf2050e213d953b3c2ecf2 | https://omero.mit.edu/webclient/img_detail/25486/?dataset=1951 | CEL-250605SHO-29 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-124 | 755_1_w1Conf 561 CY3.TIF | abd78ddab3883ced06acc02a9c6040f3 | https://omero.mit.edu/webclient/img_detail/25485/?dataset=1951 | CEL-250605SHO-30 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-125 | 755_1_w2Conf 405 DAPI.TIF | 2ee827d6e9d4c98ca17c875677e29b75 | https://omero.mit.edu/webclient/img_detail/25485/?dataset=1951 | CEL-250605SHO-30 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-126 | 755_1_w3Conf 488 GFP.TIF | 2115d26ee03eea9cbffb769f339e510e | https://omero.mit.edu/webclient/img_detail/25485/?dataset=1951 | CEL-250605SHO-30 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-127 | 755_2_w1Conf 561 CY3.TIF | 1a9b8efc9c522b73f646849c5dacec6d | https://omero.mit.edu/webclient/img_detail/25488/?dataset=1951 | CEL-250605SHO-31 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-128 | 755_2_w2Conf 405 DAPI.TIF | 226937d9d9b75147382bcef90cb620d9 | https://omero.mit.edu/webclient/img_detail/25488/?dataset=1951 | CEL-250605SHO-31 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-129 | 755_2_w3Conf 488 GFP.TIF | 07f079ec92440eeca875f3b84360a523 | https://omero.mit.edu/webclient/img_detail/25488/?dataset=1951 | CEL-250605SHO-31 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-130 | 755_3_w1Conf 561 CY3.TIF | 16bffce67007630751cab43393669a8f | https://omero.mit.edu/webclient/img_detail/25491/?dataset=1951 | CEL-250605SHO-32 | Kathryn Yammine | w1 | 561 | CY3 | Confocal IHC | Collagen-II (Col-II) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-131 | 755_3_w2Conf 405 DAPI.TIF | d3679f133f86c9b03b610c0317d6bd6f | https://omero.mit.edu/webclient/img_detail/25491/?dataset=1951 | CEL-250605SHO-32 | Kathryn Yammine | w2 | 405 | DAPI | Confocal IHC | Nuclei | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-132 | 755_3_w3Conf 488 GFP.TIF | 51787206fa4d22fdff8874c616e4540e | https://omero.mit.edu/webclient/img_detail/25491/?dataset=1951 | CEL-250605SHO-32 | Kathryn Yammine | w3 | 488 | GFP | Confocal IHC | ER marker (Calreticulin or GFP-tagged protein) | https://fairdomhub.org/sops/834 | Zeiss AxioVert200M | MetaMorph |
| D.IMG-250605SHO-133 | KY R-1_001.TIF | 69baa38f901f3ba1d75f83ae37d62868 | https://omero.mit.edu/webclient/img_detail/25555/?dataset=1952 | CEL-250605SHO-33 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-134 | KY R-1_002.TIF | 3212f86ce3184a798f19632bd28c9452 | https://omero.mit.edu/webclient/img_detail/25546/?dataset=1952 | CEL-250605SHO-33 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-135 | KY R-1_003.TIF | 3c89b3a70ff8876ac2c2ac3760e3ed7d | https://omero.mit.edu/webclient/img_detail/25550/?dataset=1952 | CEL-250605SHO-33 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-136 | KY R-1_004.TIF | d3ce1a4248944af89ae9aecfcf76db5f | https://omero.mit.edu/webclient/img_detail/25535/?dataset=1952 | CEL-250605SHO-33 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-137 | KY R-1_005.TIF | 2faabd1a87ef5346061c1ae47b5734ea | https://omero.mit.edu/webclient/img_detail/25522/?dataset=1952 | CEL-250605SHO-33 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-138 | KY R-1_006.TIF | 73dce949dc0b7692dabaf8fef1ea6c61 | https://omero.mit.edu/webclient/img_detail/25514/?dataset=1952 | CEL-250605SHO-33 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-139 | KY R-3_001.TIF | 4b7cc514b9d7742208d5e207f73e3333 | https://omero.mit.edu/webclient/img_detail/25560/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-140 | KY R-3_002.TIF | e4aad4116698e01159ca0d9ae81efae3 | https://omero.mit.edu/webclient/img_detail/25543/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-141 | KY R-3_003.TIF | 7998ef6fb64d8ee5e749a82f88969d66 | https://omero.mit.edu/webclient/img_detail/25533/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-142 | KY R-3_004.TIF | 88e9532a4178233737d0ac7a2eedd4d2 | https://omero.mit.edu/webclient/img_detail/25530/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-143 | KY R-3_005.TIF | c620c84951b6af7466fcd03c01831629 | https://omero.mit.edu/webclient/img_detail/25520/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-144 | KY R-3_006.TIF | 266c59d3975c040e8ece8f5cd0b7ea65 | https://omero.mit.edu/webclient/img_detail/25511/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-145 | KY R-3_007.TIF | d9634703df0b5beef7f4f05ff69f9741 | https://omero.mit.edu/webclient/img_detail/25504/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-146 | KY R-3_008.TIF | 0004221200b17d69f494f77886cdb838 | https://omero.mit.edu/webclient/img_detail/25500/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-147 | KY R-3_009.TIF | d4dd11bf21d9505fe18f62bb83e9b0f7 | https://omero.mit.edu/webclient/img_detail/25495/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-148 | KY R-3_010.TIF | a72810f5de26e5eaf658d4c0ca0dabea | https://omero.mit.edu/webclient/img_detail/25508/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-149 | KY R-3_011.TIF | 234d8a5dd711478da5ff92d66109193f | https://omero.mit.edu/webclient/img_detail/25534/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-150 | KY R-3_012.TIF | 534d8e6cf779686432be5f92e64a11cd | https://omero.mit.edu/webclient/img_detail/25537/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-151 | KY R-3_013.TIF | 9ef77f725d3063a1c2cc99f7618b995a | https://omero.mit.edu/webclient/img_detail/25526/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-152 | KY R-3_014.TIF | d1e162ad733c740d07df9bb6338e39c9 | https://omero.mit.edu/webclient/img_detail/25552/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-153 | KY R-3_015.TIF | 13dc1c32a77824bf649ed465f1cd4e29 | https://omero.mit.edu/webclient/img_detail/25542/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-154 | KY R-3_016.TIF | cc02c3ba51efded2cce16bd349345d8f | https://omero.mit.edu/webclient/img_detail/25505/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-155 | KY R-3_017.TIF | ed12918b656c4a4b9b2fbae6dee21a16 | https://omero.mit.edu/webclient/img_detail/25498/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-156 | KY R-3_018.TIF | 6936adfc41cdb5d380882de84fa86e5d | https://omero.mit.edu/webclient/img_detail/25521/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-157 | KY R-3_019.TIF | f9c50ee7e3effbdbf46506e67a36d6d5 | https://omero.mit.edu/webclient/img_detail/25510/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-158 | KY R-3_020.TIF | 469c2e43f059979fe24dd9d6b0ba7eef | https://omero.mit.edu/webclient/img_detail/25531/?dataset=1952 | CEL-250605SHO-34 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-159 | KY R1_001.TIF | 35900f56b3abcec70c091e3ab4318ebd | https://omero.mit.edu/webclient/img_detail/25558/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-160 | KY R1_002.TIF | 52689a22af563ac77de24eebc5260ca9 | https://omero.mit.edu/webclient/img_detail/25496/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-161 | KY R1_003.TIF | cd8e24449c42703863f14f18fe08ccdf | https://omero.mit.edu/webclient/img_detail/25501/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-162 | KY R1_004.TIF | 5c0af5455965fdda105bd6f7b21c7c5e | https://omero.mit.edu/webclient/img_detail/25509/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-163 | KY R1_005.TIF | eb8a6701f2769e132083d8335d9a8b26 | https://omero.mit.edu/webclient/img_detail/25519/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-164 | KY R1_006.TIF | 2044a3c78a8b01d3c5cbbeb68ce10aa6 | https://omero.mit.edu/webclient/img_detail/25527/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-165 | KY R1_007.TIF | d5bca3a6d19d694e8e753f8029218784 | https://omero.mit.edu/webclient/img_detail/25523/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-166 | KY R1_008.TIF | 6eef2caba99a578b6433efcd6f82a3d7 | https://omero.mit.edu/webclient/img_detail/25553/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-167 | KY R1_009.TIF | a3a75bb930c3a38a45bad942f4901312 | https://omero.mit.edu/webclient/img_detail/25561/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-168 | KY R1_010.TIF | 0646987b47eb0c3471e364ff7d241305 | https://omero.mit.edu/webclient/img_detail/25499/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-169 | KY R1_011.TIF | abfaaf6840858c48ff466393f45a7921 | https://omero.mit.edu/webclient/img_detail/25502/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-170 | KY R1_012.TIF | 2eb2e1899421a69e0b833fef6b1cfdff | https://omero.mit.edu/webclient/img_detail/25549/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-171 | KY R1_013.TIF | b8670dfbafd878f99e7f0376578481c8 | https://omero.mit.edu/webclient/img_detail/25548/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-172 | KY R1_014.TIF | f48fffa243873b30b5368527d2d53aeb | https://omero.mit.edu/webclient/img_detail/25554/?dataset=1952 | CEL-250605SHO-35 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-173 | KY R2_001.TIF | 2b11dda713530e8b800f5f3217b5c3e6 | https://omero.mit.edu/webclient/img_detail/25528/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-174 | KY R2_002.TIF | e620289cce18652551601ab4b6989066 | https://omero.mit.edu/webclient/img_detail/25540/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-175 | KY R2_003.TIF | ff11e6fdd3009c0d857d504976337373 | https://omero.mit.edu/webclient/img_detail/25532/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-176 | KY R2_004.TIF | 4cfc08ed33bac707e9d4a2a5987fd688 | https://omero.mit.edu/webclient/img_detail/25544/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-177 | KY R2_005.TIF | 169b7e8f73ea5ad1a81684cd1efecde5 | https://omero.mit.edu/webclient/img_detail/25557/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-178 | KY R2_006.TIF | dc2513538b52c30a2ec88d6b6ac4f801 | https://omero.mit.edu/webclient/img_detail/25503/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-179 | KY R2_007.TIF | fc7c8ef9b2e4d72344fb7bc2ad9d5efd | https://omero.mit.edu/webclient/img_detail/25497/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-180 | KY R2_008.TIF | 2d48b725f71047c0642847089c361d97 | https://omero.mit.edu/webclient/img_detail/25517/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-181 | KY R2_009.TIF | d9bd940164f1b1c657468193de687391 | https://omero.mit.edu/webclient/img_detail/25507/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-182 | KY R2_010.TIF | 0152b55d267d02c50f697d0fccf39bb4 | https://omero.mit.edu/webclient/img_detail/25524/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-183 | KY R2_011.TIF | e72085e8a97a20299703177ba548fd83 | https://omero.mit.edu/webclient/img_detail/25539/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-184 | KY R2_012.TIF | 0669841917c5776d15fedd60f8ec304a | https://omero.mit.edu/webclient/img_detail/25512/?dataset=1952 | CEL-250605SHO-36 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-185 | KY WT-1_001.TIF | bb5de555929aec6d8cb91b1a4e077ad1 | https://omero.mit.edu/webclient/img_detail/25515/?dataset=1952 | CEL-250605SHO-37 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-186 | KY WT-1_002.TIF | f33889d602b68c1fbca3f7439e0e34a8 | https://omero.mit.edu/webclient/img_detail/25525/?dataset=1952 | CEL-250605SHO-37 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-187 | KY WT-1_003.TIF | f99595a52b6b0ec2d667c9532672ff1e | https://omero.mit.edu/webclient/img_detail/25536/?dataset=1952 | CEL-250605SHO-37 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-188 | R (08302021)_001.TIF | f09c03f3da5798d66e1b02084f4eaf6d | https://omero.mit.edu/webclient/img_detail/25518/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-189 | R (08302021)_002.TIF | 902b8f0ed674504b08369a72d7ae6be0 | https://omero.mit.edu/webclient/img_detail/25513/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-190 | R (08302021)_003.TIF | 156120d63d90c3e8939a7798dfaf99e7 | https://omero.mit.edu/webclient/img_detail/25545/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-191 | R (08302021)_004.TIF | 92fd8503894ec9d629bf5c618e673a31 | https://omero.mit.edu/webclient/img_detail/25551/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-192 | R (08302021)_005.TIF | 5afae23f8974771fcee578731828c7b5 | https://omero.mit.edu/webclient/img_detail/25559/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-193 | R (08302021)_006.TIF | 555512a41de8d1bce77e7726973dc6e4 | https://omero.mit.edu/webclient/img_detail/25529/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-194 | R (08302021)_007.TIF | 038cf28c44f1d37aa83ee387b149f60b | https://omero.mit.edu/webclient/img_detail/25541/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-195 | R (08302021)_008.TIF | 64b5db211926d23eac3330dd54bd0a86 | https://omero.mit.edu/webclient/img_detail/25506/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-196 | R (08302021)_009.TIF | 27f87a6921902555a3b79d449a876d2f | https://omero.mit.edu/webclient/img_detail/25516/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-197 | R (08302021)_010.TIF | 8de215de70ce30787cc76f656b550c4d | https://omero.mit.edu/webclient/img_detail/25556/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-198 | R (08302021)_011.TIF | 13458e6f1e34bd9a7f050b6f9da3adac | https://omero.mit.edu/webclient/img_detail/25547/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope | |||||
| D.IMG-250605SHO-199 | R (08302021)_012.TIF | 4475b94301e7f48711110991acd0d2af | https://omero.mit.edu/webclient/img_detail/25538/?dataset=1952 | CEL-250605SHO-38 | Kathryn Yammine | TEM | https://fairdomhub.org/sops/834 | T12 Spirit Transmission Electron Microscope |
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| UID | Name | Scientist | Protocol | Notes | Lab | Parent | Type | StorageType | Volume | VolumeUnits | ExtractionMethod | QC_Instrument |
| RNA-250605SHO-1 | D21-157037 390 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-1_e | Shoulders Lab | CEL-250605SHO-43 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-2 | D21-157038 391 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-2_e | Shoulders Lab | CEL-250605SHO-44 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-3 | D21-157039 675 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-1_e | Shoulders Lab | CEL-250605SHO-45 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-4 | D21-157040 676 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-2_e | Shoulders Lab | CEL-250605SHO-46 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-5 | D21-157041 972 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-1_e | Shoulders Lab | CEL-250605SHO-47 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-6 | D21-157042 973 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-2_e | Shoulders Lab | CEL-250605SHO-48 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-7 | D21-157085 406 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-1_l | Shoulders Lab | CEL-250605SHO-49 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-8 | D21-157086 407 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-2_l | Shoulders Lab | CEL-250605SHO-50 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-9 | D21-157087 408 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-3_l | Shoulders Lab | CEL-250605SHO-51 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-10 | D21-157088 409 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_1-4_l | Shoulders Lab | CEL-250605SHO-52 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-11 | D21-157089 691 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-1_l | Shoulders Lab | CEL-250605SHO-53 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-12 | D21-157090 692 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-2_l | Shoulders Lab | CEL-250605SHO-54 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-13 | D21-157091 693 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-3_l | Shoulders Lab | CEL-250605SHO-55 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-14 | D21-157092 694 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_2-4_l | Shoulders Lab | CEL-250605SHO-56 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-15 | D21-157093 988 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-1_l | Shoulders Lab | CEL-250605SHO-57 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-16 | D21-157094 989 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-2_l | Shoulders Lab | CEL-250605SHO-58 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-17 | D21-157095 990 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-3_l | Shoulders Lab | CEL-250605SHO-59 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
| RNA-250605SHO-18 | D21-157096 991 | Kathryn Yammine | https://fairdomhub.org/sops/833 | R719C_3-4_l | Shoulders Lab | CEL-250605SHO-60 | polyA RNA | Snap-frozen | 10 | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) | Fragment Analyzer |
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| UID | Name | Protocol | Scientist | Parent | Type | NumPrepCycles | Barcode | LibraryPrepProtocol | QC_Instrument | VolumeUnits | ExtractionMethod |
| DNA-250605SHO-1 | D21-157037 390 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-1 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-2 | D21-157038 391 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-2 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-3 | D21-157039 675 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-3 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-4 | D21-157040 676 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-4 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-5 | D21-157041 972 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-5 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-6 | D21-157042 973 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-6 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-7 | D21-157085 406 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-7 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-8 | D21-157086 407 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-8 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-9 | D21-157087 408 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-9 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-10 | D21-157088 409 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-10 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-11 | D21-157089 691 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-11 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-12 | D21-157090 692 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-12 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-13 | D21-157091 693 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-13 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-14 | D21-157092 694 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-14 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-15 | D21-157093 988 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-15 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-16 | D21-157094 989 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-16 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-17 | D21-157095 990 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-17 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
| DNA-250605SHO-18 | D21-157096 991 | https://fairdomhub.org/sops/833 | MIT BioMicroCenter | RNA-250605SHO-18 | cDNA | 8 | 6 bp sample barcode + UMI (IDT) | Oligo(dT)-primed, UMI-based 3′ RNA-Seq (3′DGE) library preparation | Fragment Analyzer | ng | TRIzol (Invitrogen) + Direct-zol RNA Microprep kit (Zymo Research) |
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| UID | File_PrimaryData | File_SecondaryData | Protocol | Scientist | Link_PrimaryData | Link_SecondaryData | Checksum_PrimaryData | Checksum_SecondaryData | Parent | DataType | SequencingType | Sequencer | F_bp | R_bp | LibraryStrategy | LibrarySource | LibrarySelection | LibraryDesign | Accession | Repository |
| D.SEQ-250605SHO-1 | 210322Sho_D21-157037_sequence_1.fastq.gz | 210322Sho_D21-157037_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | c0e07491f6e7d6af34f026073eb9a57f | bac4b5daf38ac3d2d038f67e5c223315 | DNA-250605SHO-1 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-2 | 210322Sho_D21-157038_sequence_1.fastq.gz | 210322Sho_D21-157038_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | a4709cbb3e6e102eb053d6f3294165d9 | c5fc1ac05da3a03a987ff3aa2f2e196f | DNA-250605SHO-2 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-3 | 210322Sho_D21-157039_sequence_1.fastq.gz | 210322Sho_D21-157039_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 4d3b45e9903a9e951e43ef72db67af04 | 0acf0f08fd1fcc6da9104b670e1a7437 | DNA-250605SHO-3 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-4 | 210322Sho_D21-157040_sequence_1.fastq.gz | 210322Sho_D21-157040_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 6e4fc3cbf4d0b9859308d9163f085d60 | 21c78e73b554f07e84e2878991957571 | DNA-250605SHO-4 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-5 | 210322Sho_D21-157041_sequence_1.fastq.gz | 210322Sho_D21-157041_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 3c36fbf1c1b95828a01560eac2862891 | 1ef4688cc99c5a3e74cd9d94c20af0cd | DNA-250605SHO-5 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-6 | 210322Sho_D21-157042_sequence_1.fastq.gz | 210322Sho_D21-157042_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | df105ccbc434754e17e91d854807d9ea | dec825788163acd58691b7b0c3fed5af | DNA-250605SHO-6 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-7 | 210322Sho_D21-157085_sequence_1.fastq.gz | 210322Sho_D21-157085_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 728d6d8b669008fdaf186683cb06440c | d6b2f86a6e90605ec1ba8a94b6401e9c | DNA-250605SHO-7 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-8 | 210322Sho_D21-157086_sequence_1.fastq.gz | 210322Sho_D21-157086_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 381db7b85fba07441d1ba30a2bd64d73 | 0c2d539c1305602d49d69c48c38dbb88 | DNA-250605SHO-8 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-9 | 210322Sho_D21-157087_sequence_1.fastq.gz | 210322Sho_D21-157087_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 95484928f4c59ffef15dd7e4d43414cc | ccfb5a71195370e4012565f754ed98d0 | DNA-250605SHO-9 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-10 | 210322Sho_D21-157088_sequence_1.fastq.gz | 210322Sho_D21-157088_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 176c8b2ab0552abe4f4a9f5ec6e37748 | de8748f85a72bf769dadde86e043cb80 | DNA-250605SHO-10 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-11 | 210322Sho_D21-157089_sequence_1.fastq.gz | 210322Sho_D21-157089_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 2d7de05b255b6b76968f9a558c02112c | 832d4ff411b436f52a29a6f5634e3762 | DNA-250605SHO-11 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-12 | 210322Sho_D21-157090_sequence_1.fastq.gz | 210322Sho_D21-157090_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 53724aa13cef013df38d3f01ffe39e74 | 83f0c1c414a80210bec6a3305c606070 | DNA-250605SHO-12 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-13 | 210322Sho_D21-157091_sequence_1.fastq.gz | 210322Sho_D21-157091_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 9ed163f950d38fc7e40bc79ebacf0e9d | 1d11ed4df566d978918d09100bdcde3b | DNA-250605SHO-13 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-14 | 210322Sho_D21-157092_sequence_1.fastq.gz | 210322Sho_D21-157092_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | f936ab7a7940ffa21a144f8494a2e73f | eb4069b48d1139a73f6a6c218ad0d204 | DNA-250605SHO-14 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-15 | 210322Sho_D21-157093_sequence_1.fastq.gz | 210322Sho_D21-157093_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 3586b15922543f6f36912e8fa748c5e3 | b3d62d0880f7d8b0bee88c4cd1f57475 | DNA-250605SHO-15 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-16 | 210322Sho_D21-157094_sequence_1.fastq.gz | 210322Sho_D21-157094_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 4490c084a27f8d30f376f1e1743562bf | ac88d43e1587bda2517e7d9f3b27a4d9 | DNA-250605SHO-16 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-17 | 210322Sho_D21-157095_sequence_1.fastq.gz | 210322Sho_D21-157095_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | b56fae3eccd8c435b6517b5ba047e6f5 | 54b33fac09ac0796e2bca39016bc65ae | DNA-250605SHO-17 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
| D.SEQ-250605SHO-18 | 210322Sho_D21-157096_sequence_1.fastq.gz | 210322Sho_D21-157096_sequence_2.fastq.gz | https://fairdomhub.org/sops/833 | MIT BioMicro Center | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1 | 05d5a4edd8416cc73c85c0bca0387846 | 02414dcf8597c51d78c7123cde20f882 | DNA-250605SHO-18 | FASTQ | ShortRead | Illumina NextSeq500 | 20 | 57 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | paired | phs004112.v1.p1 | dbGaP |
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| UID | File_PrimaryData | Link_PrimaryData | Scientist | Parent | Protocol | ReferenceGenome | Checksum_PrimaryData | DataType | Notes | Software | Accession |
| A.GEX-250605SHO-1 | GSE271431_Gene_expression_counts_R219C.csv.gz | https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE271431&format=file&file=GSE271431%5FGene%5Fexpression%5Fcounts%5FR219C%2Ecsv%2Egz | Vincent Butty | D.SEQ-250605SHO-1; D.SEQ-250605SHO-2; D.SEQ-250605SHO-3; D.SEQ-250605SHO-4; D.SEQ-250605SHO-5; D.SEQ-250605SHO-6; D.SEQ-250605SHO-7; D.SEQ-250605SHO-8; D.SEQ-250605SHO-9; D.SEQ-250605SHO-10; D.SEQ-250605SHO-11; D.SEQ-250605SHO-12; D.SEQ-250605SHO-13; D.SEQ-250605SHO-14; D.SEQ-250605SHO-15; D.SEQ-250605SHO-16; D.SEQ-250605SHO-17; D.SEQ-250605SHO-18 | https://fairdomhub.org/sops/833 | GRCh38/ENSEMBL 101 | 7e2c584506756d0344848ba29f45ec60 | CSV | Raw gene level counts | Salmon v1.3, DESeq2, GSEA v4.1, tximport | GSE271431 |
| A.GEX-250605SHO-2 | GSE271431_Gene_expression_log2TPMs_R219C.csv.gz | https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE271431&format=file&file=GSE271431%5FGene%5Fexpression%5Flog2TPMs%5FR219C%2Ecsv%2Egz | Vincent Butty | D.SEQ-250605SHO-1; D.SEQ-250605SHO-2; D.SEQ-250605SHO-3; D.SEQ-250605SHO-4; D.SEQ-250605SHO-5; D.SEQ-250605SHO-6; D.SEQ-250605SHO-7; D.SEQ-250605SHO-8; D.SEQ-250605SHO-9; D.SEQ-250605SHO-10; D.SEQ-250605SHO-11; D.SEQ-250605SHO-12; D.SEQ-250605SHO-13; D.SEQ-250605SHO-14; D.SEQ-250605SHO-15; D.SEQ-250605SHO-16; D.SEQ-250605SHO-17; D.SEQ-250605SHO-18 | https://fairdomhub.org/sops/833 | GRCh38/ENSEMBL 101 | 83b17aafbe1c1bc1713ef34d8575b6aa | CSV | log2 transformed transcripts per million values | Salmon v1.3, DESeq2, GSEA v4.1, tximport | GSE271431 |
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| UID | File_PrimaryData | Link_PrimaryData | Parent | SampleCreationDate | Protocol | Method | Instrument | Scientist | Repository | RepositoryID | PRIDE_FileType | PRIDE_ExperimentType | PRIDE_Modification | PRIDE_Quantification | MetadataFile | ScanFile | Software | Identification |
| D.MSP-250606SHO-1 | f.MSV000096151/raw/rs240609_1505_KY_10plex_01.raw | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | CEL-250606SHO-2; CEL-250606SHO-3 | 2024-06-09T0:0:0+0000 | https://fairdomhub.org/sops/835 | LC-MS/MS | Orbitrap Eclipse Tribrid (Thermo Scientific) | Kathryn Yammine | MassIVE | MSV000096151 | Raw | Shotgun proteomics | Oxidation | TMTpro16plex | f.MSV000096151/ccms_parameters/params.xml | f.MSV000096151/ccms_metadata/ccms_peak/rs240609_1505_KY_10plex_01.mzML.scans | Proteome Discoverer 2.4 | SEQUEST |
| D.MSP-250606SHO-2 | f.MSV000096151/peak/rs240609_1505_KY_10plex_01.mzML | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | CEL-250606SHO-2; CEL-250606SHO-3 | 2024-06-09T0:0:0+0000 | https://fairdomhub.org/sops/835 | LC-MS/MS | Orbitrap Eclipse Tribrid (Thermo Scientific) | Kathryn Yammine | MassIVE | MSV000096151 | Peak | Shotgun proteomics | Oxidation | TMTpro16plex | f.MSV000096151/ccms_parameters/params.xml | f.MSV000096151/ccms_metadata/ccms_peak/rs240609_1505_KY_10plex_01.mzML.scans | Proteome Discoverer 2.4 | SEQUEST |
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| UID | File_PrimaryData | Link_PrimaryData | Protocol | Parent | QuantificationMethod | Scientist | PRIDE_FileType | ||
| A.MSP-250606SHO-1 | f.MSV000096151/result/rs240609_1505_KY_10plex_01.mzid | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | RESULT | ||
| A.MSP-250606SHO-2 | f.MSV000096151/ccms_result/rs240609_1505_KY_10plex_01.mzTab | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | RESULT | ||
| A.MSP-250606SHO-3 | f.MSV000096151/ccms_statistics/statistics.tsv | ftp://massive-ftp.ucsd.edu/v07/MSV000096151/ | https://fairdomhub.org/sops/835 | D.MSP-250606SHO-1; D.MSP-250606SHO-2 | TMT 16plex Isobaric Labeling | Kathryn Yammine | STATISTICS | ||
