AllMetadata VS-POD.xlsx

Selected Cell

Cell:

Value:

CEL D.IMG A.IMG MDL

UID

Name

Protocol

Species

Scientist

Type

Source

Parent

TreatmentType

Treatment1

Treatment1Reference

Treatment1Dose

Treatment1DoseUnits

CEL-250716SHE-1

https://fairdomhub.org/sops/836

Homo sapiens

Vivek Shenoy

Primary human monocyte-derived dendritic cells (DCs)

Buffy coats or leukapheresis product, sourced from Sanquin Blood Bank (Nijmegen, NL)

Control

CEL-250716SHE-2

DC_CytoD

https://fairdomhub.org/sops/836

Homo sapiens

Vivek Shenoy

Primary human monocyte-derived dendritic cells (DCs)

CEL-250716SHE-1

Experimental

Cytochalasin D

Sigma-Aldrich

2.5

ug/ml

CEL-250716SHE-3

DC_Blebb

https://fairdomhub.org/sops/836

Homo sapiens

Vivek Shenoy

Primary human monocyte-derived dendritic cells (DCs)

CEL-250716SHE-1

Experimental

Blebbistatin

Sigma-Aldrich

CEL-250716SHE-4

DC_Ytreat

https://fairdomhub.org/sops/836

Homo sapiens

Vivek Shenoy

Primary human monocyte-derived dendritic cells (DCs)

CEL-250716SHE-1

Experimental

Y27632

Selleck

CEL-250716SHE-5

DC_Soft

https://fairdomhub.org/sops/836

Homo sapiens

Vivek Shenoy

Primary human monocyte-derived dendritic cells (DCs)

CEL-250716SHE-1

Experimental

PDMS

Sylgard 184, Dow Chemicals;

approx 1

kPa

CEL-250716SHE-6

DC_Stiff

https://fairdomhub.org/sops/836

Homo sapiens

Vivek Shenoy

Primary human monocyte-derived dendritic cells (DCs)

CEL-250716SHE-1

Experimental

PDMS

Sylgard 184, Dow Chemicals;

approx 800

kPa

UID	File_PrimaryData	Scientist	Type	Notes	Parent	FluorescentLabels	ScanMode	Targets
D.IMG-250716SHE-1	Raw Images	Vivek Shenoy	Confocal Laser Scanning Microscopy (CLSM)	Contact vshenoy@seas.upenn.edu to get access to raw images	CEL-250716SHE-1; CEL-250716SHE-2; CEL-250716SHE-3; CEL-250716SHE-4; CEL-250716SHE-5; CEL-250716SHE-6	LifeAct-RFP	Time-lapse, live-cell	F-actin (podosome core)

UID	File_PrimaryData	Link_PrimaryData	Scientist	Type	Parent	SourceDataFile	Repository	RepositoryLink
A.IMG-250716SHE-1	Supplemental Movie 1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM4_ESM.avi	Vivek Shenoy	Movie	D.IMG-250716SHE-1		Nature
A.IMG-250716SHE-2	Supplemental Movie 4	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM7_ESM.mp4	Vivek Shenoy	Movie	D.IMG-250716SHE-1		Nature
A.IMG-250716SHE-3	FigS6 Autocorr_vs_FFT.fig	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/6c753e8d-0919-4f26-8122-535b73c05c6c	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-4	FigS5_related data.mat	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/d6bde805-335e-4303-a054-26a41dfaff0b	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-5	Podo_intensity_track.m	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/b8c35ab1-0eca-4144-beef-b9805bafece1	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-6	PlotfreqFunc.m	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/a3828a08-20fb-4a62-82a2-85204fe44f94	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-7	CytoD_figures.fig	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/362f37d3-a130-4912-9440-907f7a8f18d1	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-8	Bleb_figures.fig	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/49961662-9596-4506-9a75-3951e17e3ef1	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-9	Ytreat_figures.fig	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/b21c2681-3118-4989-a455-203ad81de517	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-10	FigS3D.fig	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/b176d0a3-72ab-4753-acb4-e6d1192bf7dc	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-11	FigS3E.fig	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/432fa170-5d48-4c4c-a363-b93c635acd12	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-12	FigS3F.fig	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/32c4a6c1-28e0-4e3e-bcdb-2e7910e79d2d	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-13	FigureS4EF.fig	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/ec01c38d-fb48-4155-9838-34bbd7bc3157	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-14	FigS2C.tif	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/53d2770a-2ee2-4047-af7c-d67edb4e4abd	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-15	Corr_2D_podo.m	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/db7b3803-6e98-47f3-ba8e-88ca5fe0d8f9	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-16	FigS6 Autocorr_vs_FFT.m	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/257fc9ec-fa80-4756-b7bc-fa0138be17be	Vivek Shenoy	Analyzed	D.IMG-250716SHE-1	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM10_ESM.xlsx	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
A.IMG-250716SHE-17	Supplemental Movie 2	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM5_ESM.avi	Vivek Shenoy	Simulated from MDL	MDL-250716SHE-1; MDL-250716SHE-2; MDL-250716SHE-3; MDL-250716SHE-4; MDL-250716SHE-5; MDL-250716SHE-6; MDL-250716SHE-7; MDL-250716SHE-8		Nature
A.IMG-250716SHE-18	Supplemental Movie 3	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM6_ESM.avi	Vivek Shenoy	Simulated from MDL	MDL-250716SHE-1; MDL-250716SHE-2; MDL-250716SHE-3; MDL-250716SHE-4; MDL-250716SHE-5; MDL-250716SHE-6; MDL-250716SHE-7; MDL-250716SHE-8		Nature
A.IMG-250716SHE-19	Supplemental Movie 4	https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-023-38598-z/MediaObjects/41467_2023_38598_MOESM7_ESM.mp4	Vivek Shenoy	Simulated from MDL	MDL-250716SHE-1; MDL-250716SHE-2; MDL-250716SHE-3; MDL-250716SHE-4; MDL-250716SHE-5; MDL-250716SHE-6; MDL-250716SHE-7; MDL-250716SHE-8		Nature

UID	File_PrimaryData	Link_PrimaryData	Scientist	Parent	Notes	Protocol	Repository	RepositoryLink
MDL-250716SHE-1	FigS6 Interp_data_r6.txt	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/e94bff0b-549f-4902-93c0-732415dc3682	Vivek Shenoy	A.IMG-250716SHE-1; A.IMG-250716SHE-2; A.IMG-250716SHE-3; A.IMG-250716SHE-4; A.IMG-250716SHE-5; A.IMG-250716SHE-6; A.IMG-250716SHE-7; A.IMG-250716SHE-8; A.IMG-250716SHE-9; A.IMG-250716SHE-10; A.IMG-250716SHE-11; A.IMG-250716SHE-12; A.IMG-250716SHE-13; A.IMG-250716SHE-14; A.IMG-250716SHE-15; A.IMG-250716SHE-16	Curation was done after the fact, all connections may not be accurate	See Model Formation: https://www.nature.com/articles/s41467-023-38598-z#Sec12	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
MDL-250716SHE-2	FigS6 Collective_rand_noisetest_correlated.mph	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/2e1414e8-e1b5-483a-b2dd-8ad3d36523bb	Vivek Shenoy	A.IMG-250716SHE-1; A.IMG-250716SHE-2; A.IMG-250716SHE-3; A.IMG-250716SHE-4; A.IMG-250716SHE-5; A.IMG-250716SHE-6; A.IMG-250716SHE-7; A.IMG-250716SHE-8; A.IMG-250716SHE-9; A.IMG-250716SHE-10; A.IMG-250716SHE-11; A.IMG-250716SHE-12; A.IMG-250716SHE-13; A.IMG-250716SHE-14; A.IMG-250716SHE-15; A.IMG-250716SHE-16	Curation was done after the fact, all connections may not be accurate	See Model Formation: https://www.nature.com/articles/s41467-023-38598-z#Sec12	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
MDL-250716SHE-3	Para_sweep_KfGamma.m	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/9d741fe9-47b4-4294-abbb-8f25df08da22	Vivek Shenoy	A.IMG-250716SHE-1; A.IMG-250716SHE-2; A.IMG-250716SHE-3; A.IMG-250716SHE-4; A.IMG-250716SHE-5; A.IMG-250716SHE-6; A.IMG-250716SHE-7; A.IMG-250716SHE-8; A.IMG-250716SHE-9; A.IMG-250716SHE-10; A.IMG-250716SHE-11; A.IMG-250716SHE-12; A.IMG-250716SHE-13; A.IMG-250716SHE-14; A.IMG-250716SHE-15; A.IMG-250716SHE-16	Curation was done after the fact, all connections may not be accurate	See Model Formation: https://www.nature.com/articles/s41467-023-38598-z#Sec12	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
MDL-250716SHE-4	Para_sweep_tauFp0.m	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/136530f2-28f3-4a7b-8b40-48d90960918b	Vivek Shenoy	A.IMG-250716SHE-1; A.IMG-250716SHE-2; A.IMG-250716SHE-3; A.IMG-250716SHE-4; A.IMG-250716SHE-5; A.IMG-250716SHE-6; A.IMG-250716SHE-7; A.IMG-250716SHE-8; A.IMG-250716SHE-9; A.IMG-250716SHE-10; A.IMG-250716SHE-11; A.IMG-250716SHE-12; A.IMG-250716SHE-13; A.IMG-250716SHE-14; A.IMG-250716SHE-15; A.IMG-250716SHE-16	Curation was done after the fact, all connections may not be accurate	See Model Formation: https://www.nature.com/articles/s41467-023-38598-z#Sec12	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
MDL-250716SHE-5	Para_sweep_VpAlpha.m	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/4bfc6c2a-657b-4514-b230-baf97c0307f7	Vivek Shenoy	A.IMG-250716SHE-1; A.IMG-250716SHE-2; A.IMG-250716SHE-3; A.IMG-250716SHE-4; A.IMG-250716SHE-5; A.IMG-250716SHE-6; A.IMG-250716SHE-7; A.IMG-250716SHE-8; A.IMG-250716SHE-9; A.IMG-250716SHE-10; A.IMG-250716SHE-11; A.IMG-250716SHE-12; A.IMG-250716SHE-13; A.IMG-250716SHE-14; A.IMG-250716SHE-15; A.IMG-250716SHE-16	Curation was done after the fact, all connections may not be accurate	See Model Formation: https://www.nature.com/articles/s41467-023-38598-z#Sec12	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
MDL-250716SHE-6	FigS6 Correlated Noise_plot.fig	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/217098d2-d1b4-48df-9b8e-3a1e8428972a	Vivek Shenoy	A.IMG-250716SHE-1; A.IMG-250716SHE-2; A.IMG-250716SHE-3; A.IMG-250716SHE-4; A.IMG-250716SHE-5; A.IMG-250716SHE-6; A.IMG-250716SHE-7; A.IMG-250716SHE-8; A.IMG-250716SHE-9; A.IMG-250716SHE-10; A.IMG-250716SHE-11; A.IMG-250716SHE-12; A.IMG-250716SHE-13; A.IMG-250716SHE-14; A.IMG-250716SHE-15; A.IMG-250716SHE-16	Curation was done after the fact, all connections may not be accurate	See Model Formation: https://www.nature.com/articles/s41467-023-38598-z#Sec12	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
MDL-250716SHE-7	FigS6 Uncorrelated Noise_plot.fig	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/0da82433-6fd4-460f-8801-278f3ff1ef24	Vivek Shenoy	A.IMG-250716SHE-1; A.IMG-250716SHE-2; A.IMG-250716SHE-3; A.IMG-250716SHE-4; A.IMG-250716SHE-5; A.IMG-250716SHE-6; A.IMG-250716SHE-7; A.IMG-250716SHE-8; A.IMG-250716SHE-9; A.IMG-250716SHE-10; A.IMG-250716SHE-11; A.IMG-250716SHE-12; A.IMG-250716SHE-13; A.IMG-250716SHE-14; A.IMG-250716SHE-15; A.IMG-250716SHE-16	Curation was done after the fact, all connections may not be accurate	See Model Formation: https://www.nature.com/articles/s41467-023-38598-z#Sec12	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1
MDL-250716SHE-8	FigS6 CorrelatedNoise_mult_vari.m	https://data.4tu.nl/file/b10471d8-8823-42d8-9768-a01dead6b25b/ebe63c78-fc80-4184-87da-b58c8054ab05	Vivek Shenoy	A.IMG-250716SHE-1; A.IMG-250716SHE-2; A.IMG-250716SHE-3; A.IMG-250716SHE-4; A.IMG-250716SHE-5; A.IMG-250716SHE-6; A.IMG-250716SHE-7; A.IMG-250716SHE-8; A.IMG-250716SHE-9; A.IMG-250716SHE-10; A.IMG-250716SHE-11; A.IMG-250716SHE-12; A.IMG-250716SHE-13; A.IMG-250716SHE-14; A.IMG-250716SHE-15; A.IMG-250716SHE-16	Curation was done after the fact, all connections may not be accurate	See Model Formation: https://www.nature.com/articles/s41467-023-38598-z#Sec12	4TU	https://doi.org/10.4121/b10471d8-8823-42d8-9768-a01dead6b25b.v1