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| Datafile metadata | How to use this sheet Details on how to use this sheet and what the cells mean can be found by visiting: | ||||||||
| Data File Title: | samples-250609-SC-R719C-A.GEX.xlsx | ||||||||
| Data File Description: | Batch sample publishing | ||||||||
| Project SEEK ID: | https://fairdomhub.org/projects/485 | ||||||||
| Master metadata sheet guide | |||||||||
| Associated Assay | |||||||||
| Existing Assay SEEK ID: | https://fairdomhub.org/assays/2672 | ||||||||
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| New Assay metadata | |||||||||
| Study SEEK ID: | |||||||||
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| Assay Description: | |||||||||
| Assay type: | Experimental_assay_type | Powered by: | |||||||
| Technology type: | Technology_type | ||||||||
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| UID | File_PrimaryData | Link_PrimaryData | Scientist | Parent | Protocol | ReferenceGenome | Checksum_PrimaryData | DataType | Notes | Software | Accession |
| A.GEX-250605SHO-1 | GSE271431_Gene_expression_counts_R219C.csv.gz | https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE271431&format=file&file=GSE271431%5FGene%5Fexpression%5Fcounts%5FR219C%2Ecsv%2Egz | Vincent Butty | D.SEQ-250605SHO-1; D.SEQ-250605SHO-2; D.SEQ-250605SHO-3; D.SEQ-250605SHO-4; D.SEQ-250605SHO-5; D.SEQ-250605SHO-6; D.SEQ-250605SHO-7; D.SEQ-250605SHO-8; D.SEQ-250605SHO-9; D.SEQ-250605SHO-10; D.SEQ-250605SHO-11; D.SEQ-250605SHO-12; D.SEQ-250605SHO-13; D.SEQ-250605SHO-14; D.SEQ-250605SHO-15; D.SEQ-250605SHO-16; D.SEQ-250605SHO-17; D.SEQ-250605SHO-18 | https://fairdomhub.org/sops/833 | GRCh38/ENSEMBL 101 | 7e2c584506756d0344848ba29f45ec60 | CSV | Raw gene level counts | Salmon v1.3, DESeq2, GSEA v4.1, tximport | GSE271431 |
| A.GEX-250605SHO-2 | GSE271431_Gene_expression_log2TPMs_R219C.csv.gz | https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE271431&format=file&file=GSE271431%5FGene%5Fexpression%5Flog2TPMs%5FR219C%2Ecsv%2Egz | Vincent Butty | D.SEQ-250605SHO-1; D.SEQ-250605SHO-2; D.SEQ-250605SHO-3; D.SEQ-250605SHO-4; D.SEQ-250605SHO-5; D.SEQ-250605SHO-6; D.SEQ-250605SHO-7; D.SEQ-250605SHO-8; D.SEQ-250605SHO-9; D.SEQ-250605SHO-10; D.SEQ-250605SHO-11; D.SEQ-250605SHO-12; D.SEQ-250605SHO-13; D.SEQ-250605SHO-14; D.SEQ-250605SHO-15; D.SEQ-250605SHO-16; D.SEQ-250605SHO-17; D.SEQ-250605SHO-18 | https://fairdomhub.org/sops/833 | GRCh38/ENSEMBL 101 | 83b17aafbe1c1bc1713ef34d8575b6aa | CSV | log2 transformed transcripts per million values | Salmon v1.3, DESeq2, GSEA v4.1, tximport | GSE271431 |
