Selected Cell
Cell:
Value:
BAC
CHM
TIS
CEL
D.MSP
A.MSP
A
B
C
D
E
F
G
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| UID | Name | Scientist | Protocol | Species | Morphology | Strain | TaxonomyID | ||
| BAC-250319WHI-1 | M. tuberculosis H37Rv | Owen Leddy | P.WHI-250319-V1_SureQuant_SampleProcessing.docx | Mycobacterium tuberculosis | Bacillus | H37Rv | 83332 | ||
A
B
C
D
E
F
G
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J
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| UID | Name | Scientist | Protocol | Type | |||||
| CHM-250319WHI-1 | EsxA_EsxJ_Iso18_hipMHC | Owen Leddy | https://fairdomhub.org/sops/802 | Synthetic Peptide | |||||
| CHM-250319WHI-2 | EsxA_EsxJ_hipMHC | Owen Leddy | https://fairdomhub.org/sops/802 | Synthetic Peptide | |||||
| CHM-250319WHI-3 | EsxA_EsxJ_hipMHC_eccCa1Tn | Owen Leddy | https://fairdomhub.org/sops/802 | Synthetic Peptide | |||||
| CHM-250319WHI-4 | EsxA_EsxJ_hipMHC_eccCa1Tn_IFNb | Owen Leddy | https://fairdomhub.org/sops/802 | Synthetic Peptide | |||||
| CHM-250319WHI-5 | EsxA_EsxB | Owen Leddy | https://fairdomhub.org/sops/802 | Synthetic Peptide | |||||
A
B
C
D
E
F
G
H
I
J
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| UID | Name | Scientist | Protocol | Type | Notes | ||||
| TIS-250319WHI-1 | Donor A | Owen Leddy | https://fairdomhub.org/sops/802 | PBMC | Deidentified buffy coats extracted from healthy donors at MGH | ||||
| TIS-250319WHI-2 | Donor B | Owen Leddy | https://fairdomhub.org/sops/802 | PBMC | Deidentified buffy coats extracted from healthy donors at MGH | ||||
| TIS-250319WHI-3 | Donor C | Owen Leddy | https://fairdomhub.org/sops/802 | PBMC | Deidentified buffy coats extracted from healthy donors at MGH | ||||
| TIS-250319WHI-4 | Donor D | Owen Leddy | https://fairdomhub.org/sops/802 | PBMC | Deidentified buffy coats extracted from healthy donors at MGH | ||||
| TIS-250319WHI-5 | Donor E | Owen Leddy | https://fairdomhub.org/sops/802 | PBMC | Deidentified buffy coats extracted from healthy donors at MGH | ||||
| TIS-250319WHI-6 | Donor H | Owen Leddy | https://fairdomhub.org/sops/802 | PBMC | Deidentified buffy coats extracted from healthy donors at MGH | ||||
| TIS-250319WHI-7 | Donor I | Owen Leddy | https://fairdomhub.org/sops/802 | PBMC | Deidentified buffy coats extracted from healthy donors at MGH | ||||
A
B
C
D
E
F
G
H
I
J
1
2
3
4
5
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| UID | Name | Type | Scientist | Protocol | Parent | Treatment1 | |||
| CEL-250319WHI-1 | Donor E Mock | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-5 | ||||
| CEL-250319WHI-2 | Donor E MTB | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-5; BAC-250319WHI-1 | MTB (BAC-250319WHI-1) | |||
| CEL-250319WHI-3 | Donor H Mock | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-6 | ||||
| CEL-250319WHI-4 | Donor H MTB | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-6; BAC-250319WHI-1 | MTB (BAC-250319WHI-1) | |||
| CEL-250319WHI-5 | Donor I Mock | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-7 | ||||
| CEL-250319WHI-6 | Donor I MTB | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-7; BAC-250319WHI-1 | MTB (BAC-250319WHI-1) | |||
| CEL-250319WHI-7 | Donor A Mock | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-1 | ||||
| CEL-250319WHI-8 | Donor A MTB | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-1; BAC-250319WHI-1 | MTB (BAC-250319WHI-1) | |||
| CEL-250319WHI-9 | Donor C Mock | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-3 | ||||
| CEL-250319WHI-10 | Donor C MTB | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-3; BAC-250319WHI-1 | MTB (BAC-250319WHI-1) | |||
| CEL-250319WHI-11 | Donor D Mock | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-4 | ||||
| CEL-250319WHI-12 | Donor D MTB | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-4; BAC-250319WHI-1 | MTB (BAC-250319WHI-1) | |||
| CEL-250319WHI-13 | Donor B Mock | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-2 | ||||
| CEL-250319WHI-14 | Donor B MTB | Monocytes | Owen Leddy | https://fairdomhub.org/sops/802 | TIS-250319WHI-2; BAC-250319WHI-1 | MTB (BAC-250319WHI-1) | |||
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
1
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| UID | File_PrimaryData | Link_PrimaryData | SampleCreationDate | Parent | Protocol | Type | Instrument | Method | Scientist | Repository | PRIDE_FileType | PRIDE_ExperimentType | PRIDE_Modification | PRIDE_Quantification |
| D.MSP-250319WHI-1 | 031622_donor_E_Mock_F3.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031622_donor_E_Mock_F3.raw | 2022-03-16T0:0:0+0000 | CEL-250319WHI-1 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-2 | 031622_donor_E__Mtb_F3.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031622_donor_E__Mtb_F3.raw | 2022-03-16T0:0:0+0000 | CEL-250319WHI-2 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-3 | 031722_donor_E_Mock_F2.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031722_donor_E_Mock_F2.raw | 2022-03-17T0:0:0+0000 | CEL-250319WHI-1 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-4 | 031722_donor_E_Mock_F4.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031722_donor_E_Mock_F4.raw | 2022-03-17T0:0:0+0000 | CEL-250319WHI-1 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-5 | 031722_donor_E_Mock_F5.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031722_donor_E_Mock_F5.raw | 2022-03-17T0:0:0+0000 | CEL-250319WHI-1 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-6 | 031722_donor_E_Mock_F7.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031722_donor_E_Mock_F7.raw | 2022-03-17T0:0:0+0000 | CEL-250319WHI-1 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-7 | 031722_donor_E__Mtb_F5.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031722_donor_E__Mtb_F5.raw | 2022-03-17T0:0:0+0000 | CEL-250319WHI-2 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-8 | 031722_donor_E__Mtb_F6.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031722_donor_E__Mtb_F6.raw | 2022-03-17T0:0:0+0000 | CEL-250319WHI-2 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-9 | 031722_donor_E__Mtb_F7.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031722_donor_E__Mtb_F7.raw | 2022-03-17T0:0:0+0000 | CEL-250319WHI-2 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-10 | 031822_donor_E_Mock_F2_less_kgd.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031822_donor_E_Mock_F2_less_kgd.raw | 2022-03-18T0:0:0+0000 | CEL-250319WHI-1 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-11 | 031822_donor_E_Mock_F6_retry.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031822_donor_E_Mock_F6_retry.raw | 2022-03-18T0:0:0+0000 | CEL-250319WHI-1 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-12 | 031822_donor_E_Mock_F8.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031822_donor_E_Mock_F8.raw | 2022-03-18T0:0:0+0000 | CEL-250319WHI-1 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-13 | 031822_donor_E_Mock_F12.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031822_donor_E_Mock_F12.raw | 2022-03-18T0:0:0+0000 | CEL-250319WHI-1 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-14 | 031822_donor_E__Mtb_F2_less_kgd.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031822_donor_E__Mtb_F2_less_kgd.raw | 2022-03-18T0:0:0+0000 | CEL-250319WHI-2 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-15 | 031822_donor_E__Mtb_F4.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031822_donor_E__Mtb_F4.raw | 2022-03-18T0:0:0+0000 | CEL-250319WHI-2 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-16 | 031822_donor_E__Mtb_F8.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031822_donor_E__Mtb_F8.raw | 2022-03-18T0:0:0+0000 | CEL-250319WHI-2 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-17 | 031822_donor_E__Mtb_F12.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/031822_donor_E__Mtb_F12.raw | 2022-03-18T0:0:0+0000 | CEL-250319WHI-2 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-18 | 032122_donor_H_Mock_F1.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H_Mock_F1.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-3 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-19 | 032122_donor_H_Mock_F2.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H_Mock_F2.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-3 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-20 | 032122_donor_H_Mock_F3.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H_Mock_F3.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-3 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-21 | 032122_donor_H_Mock_F4.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H_Mock_F4.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-3 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-22 | 032122_donor_H_Mock_F5.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H_Mock_F5.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-3 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-23 | 032122_donor_H_Mock_F6.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H_Mock_F6.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-3 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-24 | 032122_donor_H_Mock_F7.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H_Mock_F7.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-3 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-25 | 032122_donor_H_Mock_F12.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H_Mock_F12.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-3 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-26 | 032122_donor_H__Mtb_F1.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H__Mtb_F1.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-4 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-27 | 032122_donor_H__Mtb_F2.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H__Mtb_F2.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-4 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-28 | 032122_donor_H__Mtb_F5.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H__Mtb_F5.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-4 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-29 | 032122_donor_H__Mtb_F6.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/032122_donor_H__Mtb_F6.raw | 2022-03-21T0:0:0+0000 | CEL-250319WHI-4 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-30 | 040722_donor_I_Mock_F2_rebal.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F2_rebal.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-31 | 040722_donor_I_Mock_F3.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F3.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-32 | 040722_donor_I_Mock_F4.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F4.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-33 | 040722_donor_I_Mock_F5.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F5.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-34 | 040722_donor_I_Mock_F6.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F6.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-35 | 040722_donor_I_Mock_F7.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F7.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-36 | 040722_donor_I_Mock_F8_repeat.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F8_repeat.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-37 | 040722_donor_I_Mock_F9.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F9.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-38 | 040722_donor_I_Mock_F10.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F10.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-39 | 040722_donor_I_Mock_F11.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F11.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-40 | 040722_donor_I_Mock_F12.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I_Mock_F12.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-5 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-41 | 040722_donor_I__Mtb_F2.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I__Mtb_F2.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-6 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-42 | 040722_donor_I__Mtb_F4.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I__Mtb_F4.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-6 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-43 | 040722_donor_I__Mtb_F5.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I__Mtb_F5.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-6 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-44 | 040722_donor_I__Mtb_F7.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I__Mtb_F7.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-6 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-45 | 040722_donor_I__Mtb_F8_repeat.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I__Mtb_F8_repeat.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-6 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-46 | 040722_donor_I__Mtb_F9.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I__Mtb_F9.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-6 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-47 | 040722_donor_I__Mtb_F10.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I__Mtb_F10.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-6 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-48 | 040722_donor_I__Mtb_F12.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/040722_donor_I__Mtb_F12.raw | 2022-04-07T0:0:0+0000 | CEL-250319WHI-6 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-49 | 042822_EsxA_EsxJ_Iso18_1H_hipMHC_DMSO.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/042822_EsxA_EsxJ_Iso18_1H_hipMHC_DMSO.raw | 2022-04-28T0:0:0+0000 | CHM-250319WHI-1; CEL-250319WHI-13; CEL-250319WHI-14 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-50 | 042822_EsxA_EsxJ_Iso18_1H_hipMHC_E64.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/042822_EsxA_EsxJ_Iso18_1H_hipMHC_E64.raw | 2022-04-28T0:0:0+0000 | CHM-250319WHI-1; CEL-250319WHI-13; CEL-250319WHI-14 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-51 | 042822_EsxA_EsxJ_Iso18_1H_hipMHC_MG132.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/042822_EsxA_EsxJ_Iso18_1H_hipMHC_MG132.raw | 2022-04-28T0:0:0+0000 | CHM-250319WHI-1; CEL-250319WHI-13; CEL-250319WHI-14 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-52 | 042822_EsxA_EsxJ_Iso18_1H_hipMHC_Mock.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/042822_EsxA_EsxJ_Iso18_1H_hipMHC_Mock.raw | 2022-04-28T0:0:0+0000 | CHM-250319WHI-1; CEL-250319WHI-13; CEL-250319WHI-14 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-53 | 042822_EsxA_EsxJ_Iso18_1H_hipMHC_baf.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/042822_EsxA_EsxJ_Iso18_1H_hipMHC_baf.raw | 2022-04-28T0:0:0+0000 | CHM-250319WHI-1; CEL-250319WHI-13; CEL-250319WHI-14 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-54 | 050922_EsxA_EsxJ_hipMHC_Mock.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/050922_EsxA_EsxJ_hipMHC_Mock.raw | 2022-05-09T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-13; CEL-250319WHI-14 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-55 | 050922_EsxA_EsxJ_hipMHC_WT.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/050922_EsxA_EsxJ_hipMHC_WT.raw | 2022-05-09T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-13; CEL-250319WHI-14 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-56 | 050922_EsxA_EsxJ_hipMHC_eccCa1Tn.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/050922_EsxA_EsxJ_hipMHC_eccCa1Tn.raw | 2022-05-09T0:0:0+0000 | CHM-250319WHI-3; CEL-250319WHI-13; CEL-250319WHI-14 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-57 | 050922_EsxA_EsxJ_hipMHC_eccCa1Tn_IFNb.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/050922_EsxA_EsxJ_hipMHC_eccCa1Tn_IFNb.raw | 2022-05-09T0:0:0+0000 | CHM-250319WHI-4; CEL-250319WHI-13; CEL-250319WHI-14 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-58 | 052622_EsxA_EsxJ_hipMHC_Mock_donor_A_precolumn.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/052622_EsxA_EsxJ_hipMHC_Mock_donor_A_precolumn.raw | 2022-05-26T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-7; CEL-250319WHI-8 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-59 | 052622_EsxA_EsxJ_hipMHC_Mock_donor_C_precolumn.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/052622_EsxA_EsxJ_hipMHC_Mock_donor_C_precolumn.raw | 2022-05-26T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-60 | 052622_EsxA_EsxJ_hipMHC_WT_donor_A_precolumn.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/052622_EsxA_EsxJ_hipMHC_WT_donor_A_precolumn.raw | 2022-05-26T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-7; CEL-250319WHI-8 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-61 | 052622_EsxA_EsxJ_hipMHC_WT_donor_C_precolumn.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/052622_EsxA_EsxJ_hipMHC_WT_donor_C_precolumn.raw | 2022-05-26T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-62 | 052622_EsxA_EsxJ_hipMHC_eccCa1Tn_IFNb_donor_A_precolumn.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/052622_EsxA_EsxJ_hipMHC_eccCa1Tn_IFNb_donor_A_precolumn.raw | 2022-05-26T0:0:0+0000 | CHM-250319WHI-4; CEL-250319WHI-7; CEL-250319WHI-8 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-63 | 052622_EsxA_EsxJ_hipMHC_eccCa1Tn_IFNb_donor_C_precolumn.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/052622_EsxA_EsxJ_hipMHC_eccCa1Tn_IFNb_donor_C_precolumn.raw | 2022-05-26T0:0:0+0000 | CHM-250319WHI-4; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-64 | 052622_EsxA_EsxJ_hipMHC_eccCa1Tn_donor_A_precolumn.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/052622_EsxA_EsxJ_hipMHC_eccCa1Tn_donor_A_precolumn.raw | 2022-05-26T0:0:0+0000 | CHM-250319WHI-3; CEL-250319WHI-7; CEL-250319WHI-8 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-65 | 052622_EsxA_EsxJ_hipMHC_eccCa1Tn_donor_C_precolumn.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/052622_EsxA_EsxJ_hipMHC_eccCa1Tn_donor_C_precolumn.raw | 2022-05-26T0:0:0+0000 | CHM-250319WHI-3; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-66 | 060822_EsxA_EsxJ_hipMHC_donorA_DMSO.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/060822_EsxA_EsxJ_hipMHC_donorA_DMSO.raw | 2022-06-08T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-7; CEL-250319WHI-8 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-67 | 060822_EsxA_EsxJ_hipMHC_donorA_E64.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/060822_EsxA_EsxJ_hipMHC_donorA_E64.raw | 2022-06-08T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-7; CEL-250319WHI-8 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-68 | 060822_EsxA_EsxJ_hipMHC_donorA_MG.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/060822_EsxA_EsxJ_hipMHC_donorA_MG.raw | 2022-06-08T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-7; CEL-250319WHI-8 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-69 | 060822_EsxA_EsxJ_hipMHC_donorA_baf.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/060822_EsxA_EsxJ_hipMHC_donorA_baf.raw | 2022-06-08T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-7; CEL-250319WHI-8 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-70 | 060822_EsxA_EsxJ_hipMHC_donorA_mock_DMSO_retry.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/060822_EsxA_EsxJ_hipMHC_donorA_mock_DMSO_retry.raw | 2022-06-08T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-7; CEL-250319WHI-8 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-71 | 070122_EsxA_EsxB_donorC__Mtb3.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070122_EsxA_EsxB_donorC__Mtb3.raw | 2022-07-01T0:0:0+0000 | CHM-250319WHI-5; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-72 | 070122_EsxA_EsxB_donorC_mock2.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070122_EsxA_EsxB_donorC_mock2.raw | 2022-07-01T0:0:0+0000 | CHM-250319WHI-5; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-73 | 070122_EsxA_EsxJ_hipMHC_donorC_DMSO.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070122_EsxA_EsxJ_hipMHC_donorC_DMSO.raw | 2022-07-01T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-74 | 070122_EsxA_EsxJ_hipMHC_donorC_E64d.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070122_EsxA_EsxJ_hipMHC_donorC_E64d.raw | 2022-07-01T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-75 | 070122_EsxA_EsxJ_hipMHC_donorC_MG2.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070122_EsxA_EsxJ_hipMHC_donorC_MG2.raw | 2022-07-01T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-76 | 070122_EsxA_EsxJ_hipMHC_donorC_baf.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070122_EsxA_EsxJ_hipMHC_donorC_baf.raw | 2022-07-01T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-77 | 070122_EsxA_EsxJ_hipMHC_donorC_mock_DMSO.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070122_EsxA_EsxJ_hipMHC_donorC_mock_DMSO.raw | 2022-07-01T0:0:0+0000 | CHM-250319WHI-2; CEL-250319WHI-9; CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-78 | 070321_donor_D_ABC_Mtb_Mtb9.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070321_donor_D_ABC_Mtb_Mtb9.raw | 2021-07-03T0:0:0+0000 | CEL-250319WHI-12 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-79 | 070321_donor_D_ABC_mock_Mtb9_2.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070321_donor_D_ABC_mock_Mtb9_2.raw | 2021-07-03T0:0:0+0000 | CEL-250319WHI-11 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-80 | 070621_donor_A_Mtb_Mtb9.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070621_donor_A_Mtb_Mtb9.raw | 2021-07-03T0:0:0+0000 | CEL-250319WHI-8 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-81 | 070621_donor_A_mock_Mtb9.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070621_donor_A_mock_Mtb9.raw | 2021-07-03T0:0:0+0000 | CEL-250319WHI-7 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-82 | 070621_donor_C_Mtb_Mtb9.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070621_donor_C_Mtb_Mtb9.raw | 2021-07-03T0:0:0+0000 | CEL-250319WHI-10 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
| D.MSP-250319WHI-83 | 070621_donor_C_mock_Mtb9.raw | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/070621_donor_C_mock_Mtb9.raw | 2021-07-03T0:0:0+0000 | CEL-250319WHI-9 | https://fairdomhub.org/sops/803 | Immunopeptideomics | Orbitrap Exploris 480 | LC-MS/MS | Owen Leddy | PRIDE | RAW | Shotgun proteomics | No PTMS are included in this dataset | Unknown |
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| UID | File_PrimaryData | Link_PrimaryData | Parent | PRIDE_FileType | Type | Code | Protocol | Scientist | Software |
| A.MSP-250319WHI-1 | DonorA_DonorC_ESX_IFNb_Mtb_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_DonorC_ESX_IFNb_Mtb_peptides.csv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77; D.MSP-250319WHI-58; D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-2 | DonorA_DonorC_ESX_IFNb_hipMHC_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_DonorC_ESX_IFNb_hipMHC_peptides.csv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77; D.MSP-250319WHI-58; D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-3 | Donors_A_C_ESX1_IFNb_Mtb_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/Donors_A_C_ESX1_IFNb_Mtb_peptide_chromatograms.tsv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77; D.MSP-250319WHI-58; D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-4 | Donors_A_C_ESX1_IFNb_hipMHC_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/Donors_A_C_ESX1_IFNb_hipMHC_chromatograms.tsv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77; D.MSP-250319WHI-58; D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-5 | DonorA_drug_Mtb_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_Mtb_peptide_chromatograms.tsv | D.MSP-250319WHI-58; D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-6 | DonorA_drug_Mtb_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_Mtb_peptides.csv | D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-7 | DonorA_drug_hipMHC_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_hipMHC_chromatograms.tsv | D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-8 | DonorA_drug_hipMHCs.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_hipMHCs.csv | D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-9 | DonorA_drug_self_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_self_peptide_chromatograms.tsv | D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-10 | DonorA_drug_self_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_self_peptides.csv | D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-11 | DonorB_ESX1_IFNb_Mtb_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_ESX1_IFNb_Mtb_peptides.csv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-12 | DonorB_ESX1_IFNb_hipMHC_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_ESX1_IFNb_hipMHC_peptides.csv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-13 | DonorB_drug_Mtb_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_Mtb_peptide_chromatograms.tsv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-14 | DonorB_drug_Mtb_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_Mtb_peptides.csv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-15 | DonorB_drug_hipMHC_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_hipMHC_chromatograms.tsv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-16 | DonorB_drug_hipMHCs.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_hipMHCs.csv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-17 | DonorB_drug_self_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_self_peptide_chromatograms.tsv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-18 | DonorB_drug_self_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_self_peptides.csv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-19 | DonorC_drug_Mtb_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_Mtb_peptide_chromatograms.tsv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-20 | DonorC_drug_Mtb_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_Mtb_peptides.csv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-21 | DonorC_drug_hipMHC_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_hipMHC_chromatograms.tsv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-22 | DonorC_drug_hipMHCs.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_hipMHCs.csv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-23 | DonorC_drug_self_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_self_peptide_chromatograms.tsv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-24 | DonorC_drug_self_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_self_peptides.csv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-25 | Donor_B_ESX1_IFNb_Mtb_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/Donor_B_ESX1_IFNb_Mtb_peptide_chromatograms.tsv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-26 | Donor_B_ESX1_IFNb_hipMHC_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/Donor_B_ESX1_IFNb_hipMHC_chromatograms.tsv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-27 | donor_E_validation_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/donor_E_validation_chromatograms.tsv | D.MSP-250319WHI-1; D.MSP-250319WHI-2; D.MSP-250319WHI-3; D.MSP-250319WHI-4; D.MSP-250319WHI-5; D.MSP-250319WHI-6; D.MSP-250319WHI-7; D.MSP-250319WHI-8; D.MSP-250319WHI-9; D.MSP-250319WHI-10; D.MSP-250319WHI-11; D.MSP-250319WHI-12; D.MSP-250319WHI-13; D.MSP-250319WHI-14; D.MSP-250319WHI-15; D.MSP-250319WHI-16; D.MSP-250319WHI-17 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-28 | donor_H_validation_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/donor_H_validation_chromatograms.tsv | D.MSP-250319WHI-18; D.MSP-250319WHI-19; D.MSP-250319WHI-20; D.MSP-250319WHI-21; D.MSP-250319WHI-22; D.MSP-250319WHI-23; D.MSP-250319WHI-24; D.MSP-250319WHI-25; D.MSP-250319WHI-26; D.MSP-250319WHI-27; D.MSP-250319WHI-28; D.MSP-250319WHI-29 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-29 | donor_I_validation_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/donor_I_validation_chromatograms.tsv | D.MSP-250319WHI-30; D.MSP-250319WHI-31; D.MSP-250319WHI-32; D.MSP-250319WHI-33; D.MSP-250319WHI-34; D.MSP-250319WHI-35; D.MSP-250319WHI-36; D.MSP-250319WHI-37; D.MSP-250319WHI-38; D.MSP-250319WHI-39; D.MSP-250319WHI-40; D.MSP-250319WHI-41; D.MSP-250319WHI-42; D.MSP-250319WHI-43; D.MSP-250319WHI-44; D.MSP-250319WHI-45; D.MSP-250319WHI-46; D.MSP-250319WHI-47; D.MSP-250319WHI-48 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-30 | donors_ACD_validation_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/donors_ACD_validation_chromatograms.tsv | D.MSP-250319WHI-78; D.MSP-250319WHI-79; D.MSP-250319WHI-80; D.MSP-250319WHI-81; D.MSP-250319WHI-82; D.MSP-250319WHI-83 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-31 | validation_results_donorE.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/validation_results_donorE.csv | D.MSP-250319WHI-1; D.MSP-250319WHI-2; D.MSP-250319WHI-3; D.MSP-250319WHI-4; D.MSP-250319WHI-5; D.MSP-250319WHI-6; D.MSP-250319WHI-7; D.MSP-250319WHI-8; D.MSP-250319WHI-9; D.MSP-250319WHI-10; D.MSP-250319WHI-11; D.MSP-250319WHI-12; D.MSP-250319WHI-13; D.MSP-250319WHI-14; D.MSP-250319WHI-15; D.MSP-250319WHI-16; D.MSP-250319WHI-17 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-32 | validation_results_donorH.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/validation_results_donorH.csv | D.MSP-250319WHI-18; D.MSP-250319WHI-19; D.MSP-250319WHI-20; D.MSP-250319WHI-21; D.MSP-250319WHI-22; D.MSP-250319WHI-23; D.MSP-250319WHI-24; D.MSP-250319WHI-25; D.MSP-250319WHI-26; D.MSP-250319WHI-27; D.MSP-250319WHI-28; D.MSP-250319WHI-29 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-33 | validation_results_donorI.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/validation_results_donorI.csv | D.MSP-250319WHI-30; D.MSP-250319WHI-31; D.MSP-250319WHI-32; D.MSP-250319WHI-33; D.MSP-250319WHI-34; D.MSP-250319WHI-35; D.MSP-250319WHI-36; D.MSP-250319WHI-37; D.MSP-250319WHI-38; D.MSP-250319WHI-39; D.MSP-250319WHI-40; D.MSP-250319WHI-41; D.MSP-250319WHI-42; D.MSP-250319WHI-43; D.MSP-250319WHI-44; D.MSP-250319WHI-45; D.MSP-250319WHI-46; D.MSP-250319WHI-47; D.MSP-250319WHI-48 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-34 | validation_results_donorsACD.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/validation_results_donorsACD.csv | D.MSP-250319WHI-78; D.MSP-250319WHI-79; D.MSP-250319WHI-80; D.MSP-250319WHI-81; D.MSP-250319WHI-82; D.MSP-250319WHI-83 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
