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| Datafile metadata | How to use this sheet Details on how to use this sheet and what the cells mean can be found by visiting: | ||||||||
| Data File Title: | samples-publish250319_A.MSP.xlsx | ||||||||
| Data File Description: | Batch sample publishing | ||||||||
| Project SEEK ID: | https://fairdomhub.org/projects/441 | ||||||||
| Master metadata sheet guide | |||||||||
| Associated Assay | |||||||||
| Existing Assay SEEK ID: | https://fairdomhub.org/assays/2589 | ||||||||
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| New Assay metadata | |||||||||
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| Assay Description: | |||||||||
| Assay type: | Experimental_assay_type | Powered by: | |||||||
| Technology type: | Technology_type | ||||||||
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| UID | File_PrimaryData | Link_PrimaryData | Parent | PRIDE_FileType | Type | Code | Protocol | Scientist | Software |
| A.MSP-250319WHI-1 | DonorA_DonorC_ESX_IFNb_Mtb_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_DonorC_ESX_IFNb_Mtb_peptides.csv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77; D.MSP-250319WHI-58; D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-2 | DonorA_DonorC_ESX_IFNb_hipMHC_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_DonorC_ESX_IFNb_hipMHC_peptides.csv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77; D.MSP-250319WHI-58; D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-3 | Donors_A_C_ESX1_IFNb_Mtb_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/Donors_A_C_ESX1_IFNb_Mtb_peptide_chromatograms.tsv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77; D.MSP-250319WHI-58; D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-4 | Donors_A_C_ESX1_IFNb_hipMHC_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/Donors_A_C_ESX1_IFNb_hipMHC_chromatograms.tsv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77; D.MSP-250319WHI-58; D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-5 | DonorA_drug_Mtb_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_Mtb_peptide_chromatograms.tsv | D.MSP-250319WHI-58; D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-6 | DonorA_drug_Mtb_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_Mtb_peptides.csv | D.MSP-250319WHI-60; D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-7 | DonorA_drug_hipMHC_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_hipMHC_chromatograms.tsv | D.MSP-250319WHI-62; D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-8 | DonorA_drug_hipMHCs.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_hipMHCs.csv | D.MSP-250319WHI-64; D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-9 | DonorA_drug_self_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_self_peptide_chromatograms.tsv | D.MSP-250319WHI-66; D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-10 | DonorA_drug_self_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorA_drug_self_peptides.csv | D.MSP-250319WHI-67; D.MSP-250319WHI-68; D.MSP-250319WHI-69; D.MSP-250319WHI-70 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-11 | DonorB_ESX1_IFNb_Mtb_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_ESX1_IFNb_Mtb_peptides.csv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-12 | DonorB_ESX1_IFNb_hipMHC_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_ESX1_IFNb_hipMHC_peptides.csv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-13 | DonorB_drug_Mtb_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_Mtb_peptide_chromatograms.tsv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-14 | DonorB_drug_Mtb_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_Mtb_peptides.csv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-15 | DonorB_drug_hipMHC_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_hipMHC_chromatograms.tsv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-16 | DonorB_drug_hipMHCs.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_hipMHCs.csv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-17 | DonorB_drug_self_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_self_peptide_chromatograms.tsv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-18 | DonorB_drug_self_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorB_drug_self_peptides.csv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-19 | DonorC_drug_Mtb_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_Mtb_peptide_chromatograms.tsv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-20 | DonorC_drug_Mtb_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_Mtb_peptides.csv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-21 | DonorC_drug_hipMHC_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_hipMHC_chromatograms.tsv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-22 | DonorC_drug_hipMHCs.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_hipMHCs.csv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-23 | DonorC_drug_self_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_self_peptide_chromatograms.tsv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-24 | DonorC_drug_self_peptides.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/DonorC_drug_self_peptides.csv | D.MSP-250319WHI-59; D.MSP-250319WHI-61; D.MSP-250319WHI-63; D.MSP-250319WHI-65; D.MSP-250319WHI-71; D.MSP-250319WHI-72; D.MSP-250319WHI-73; D.MSP-250319WHI-74; D.MSP-250319WHI-75; D.MSP-250319WHI-76; D.MSP-250319WHI-77 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-25 | Donor_B_ESX1_IFNb_Mtb_peptide_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/Donor_B_ESX1_IFNb_Mtb_peptide_chromatograms.tsv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-26 | Donor_B_ESX1_IFNb_hipMHC_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/Donor_B_ESX1_IFNb_hipMHC_chromatograms.tsv | D.MSP-250319WHI-49; D.MSP-250319WHI-50; D.MSP-250319WHI-51; D.MSP-250319WHI-52; D.MSP-250319WHI-53; D.MSP-250319WHI-54; D.MSP-250319WHI-55; D.MSP-250319WHI-56; D.MSP-250319WHI-57 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-27 | donor_E_validation_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/donor_E_validation_chromatograms.tsv | D.MSP-250319WHI-1; D.MSP-250319WHI-2; D.MSP-250319WHI-3; D.MSP-250319WHI-4; D.MSP-250319WHI-5; D.MSP-250319WHI-6; D.MSP-250319WHI-7; D.MSP-250319WHI-8; D.MSP-250319WHI-9; D.MSP-250319WHI-10; D.MSP-250319WHI-11; D.MSP-250319WHI-12; D.MSP-250319WHI-13; D.MSP-250319WHI-14; D.MSP-250319WHI-15; D.MSP-250319WHI-16; D.MSP-250319WHI-17 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-28 | donor_H_validation_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/donor_H_validation_chromatograms.tsv | D.MSP-250319WHI-18; D.MSP-250319WHI-19; D.MSP-250319WHI-20; D.MSP-250319WHI-21; D.MSP-250319WHI-22; D.MSP-250319WHI-23; D.MSP-250319WHI-24; D.MSP-250319WHI-25; D.MSP-250319WHI-26; D.MSP-250319WHI-27; D.MSP-250319WHI-28; D.MSP-250319WHI-29 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-29 | donor_I_validation_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/donor_I_validation_chromatograms.tsv | D.MSP-250319WHI-30; D.MSP-250319WHI-31; D.MSP-250319WHI-32; D.MSP-250319WHI-33; D.MSP-250319WHI-34; D.MSP-250319WHI-35; D.MSP-250319WHI-36; D.MSP-250319WHI-37; D.MSP-250319WHI-38; D.MSP-250319WHI-39; D.MSP-250319WHI-40; D.MSP-250319WHI-41; D.MSP-250319WHI-42; D.MSP-250319WHI-43; D.MSP-250319WHI-44; D.MSP-250319WHI-45; D.MSP-250319WHI-46; D.MSP-250319WHI-47; D.MSP-250319WHI-48 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-30 | donors_ACD_validation_chromatograms.tsv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/donors_ACD_validation_chromatograms.tsv | D.MSP-250319WHI-78; D.MSP-250319WHI-79; D.MSP-250319WHI-80; D.MSP-250319WHI-81; D.MSP-250319WHI-82; D.MSP-250319WHI-83 | OTHER | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-31 | validation_results_donorE.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/validation_results_donorE.csv | D.MSP-250319WHI-1; D.MSP-250319WHI-2; D.MSP-250319WHI-3; D.MSP-250319WHI-4; D.MSP-250319WHI-5; D.MSP-250319WHI-6; D.MSP-250319WHI-7; D.MSP-250319WHI-8; D.MSP-250319WHI-9; D.MSP-250319WHI-10; D.MSP-250319WHI-11; D.MSP-250319WHI-12; D.MSP-250319WHI-13; D.MSP-250319WHI-14; D.MSP-250319WHI-15; D.MSP-250319WHI-16; D.MSP-250319WHI-17 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-32 | validation_results_donorH.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/validation_results_donorH.csv | D.MSP-250319WHI-18; D.MSP-250319WHI-19; D.MSP-250319WHI-20; D.MSP-250319WHI-21; D.MSP-250319WHI-22; D.MSP-250319WHI-23; D.MSP-250319WHI-24; D.MSP-250319WHI-25; D.MSP-250319WHI-26; D.MSP-250319WHI-27; D.MSP-250319WHI-28; D.MSP-250319WHI-29 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-33 | validation_results_donorI.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/validation_results_donorI.csv | D.MSP-250319WHI-30; D.MSP-250319WHI-31; D.MSP-250319WHI-32; D.MSP-250319WHI-33; D.MSP-250319WHI-34; D.MSP-250319WHI-35; D.MSP-250319WHI-36; D.MSP-250319WHI-37; D.MSP-250319WHI-38; D.MSP-250319WHI-39; D.MSP-250319WHI-40; D.MSP-250319WHI-41; D.MSP-250319WHI-42; D.MSP-250319WHI-43; D.MSP-250319WHI-44; D.MSP-250319WHI-45; D.MSP-250319WHI-46; D.MSP-250319WHI-47; D.MSP-250319WHI-48 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
| A.MSP-250319WHI-34 | validation_results_donorsACD.csv | https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037843/validation_results_donorsACD.csv | D.MSP-250319WHI-78; D.MSP-250319WHI-79; D.MSP-250319WHI-80; D.MSP-250319WHI-81; D.MSP-250319WHI-82; D.MSP-250319WHI-83 | SEARCH | SureQuant Analysis | https://github.com/oleddy/SureQuant_MHC/ | https://fairdomhub.org/sops/803 | Owen Leddy | Skyline: Link to templates:https://static-content.springer.com/esm/art%3A10.1038%2Fs41596-024-01076-x/MediaObjects/41596_2024_1076_MOESM1_ESM.zip |
