P. umsongensis GO16 ttdR KO ALE_Butyrate Whole-Genome Sequencing raw data

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A	3783829	3783829	1	1		G -> A					241	SNP (transition)			41.1%	2.0E-208
G	3783847	3783847	1	1		T -> G					255	SNP (transversion)			50.2%	2.5E-309
C	3783849	3783849	1	1		A -> C					260	SNP (transversion)			51.5%	0.0
C	3783862	3783862	1	1		T -> C					266	SNP (transition)			54.1%	0.0
G	3783866	3783866	1	1		C -> G					266	SNP (transversion)			55.3%	0.0
A	3783868	3783868	1	1		G -> A					267	SNP (transition)			55.8%	0.0
A	3783870	3783870	1	1		T -> A					268	SNP (transversion)			55.6%	0.0
T	3783881	3783880	0	1		+T					254	Insertion			57.9%	3.0E-309
T	3783914	3783914	1	1		C -> T					192	SNP (transition)			53.1%	8.3E-220
CAT	3783932	3783934	3	1		ATG -> CAT					170 -> 178	Substitution			47.1% -> 47.8%	9.2E-148
T	3783941	3783941	1	1		G -> T					157	SNP (transversion)			40.1%	2.1E-82
G	3783943	3783943	1	1		A -> G					157	SNP (transition)			43.9%	6.6E-121
C	3783948	3783948	1	1		A -> C					161	SNP (transversion)			45.3%	4.1E-129
T	3783950	3783950	1	1		C -> T					154	SNP (transition)			42.9%	3.1E-108
A	3783952	3783952	1	1		T -> A					150	SNP (transversion)			44.0%	1.2E-102
T	3783962	3783962	1	1		A -> T					145	SNP (transversion)			40.7%	2.2E-89
C	3783964	3783964	1	1		T -> C					145	SNP (transition)			40.7%	2.2E-89
C	3783972	3783972	1	1		G -> C					141	SNP (transversion)			35.5%	2.3E-67
G	3784019	3784019	1	1		T -> G					136	SNP (transversion)			30.9%	2.6E-66
A	3784021	3784021	1	1		G -> A					133	SNP (transition)			30.1%	1.2E-66
T	3784025	3784025	1	1		A -> T					131	SNP (transversion)			29.8%	1.1E-68
C	3784034	3784034	1	1		G -> C					136	SNP (transversion)			30.1%	2.9E-64
A	3784041	3784041	1	1		G -> A					138	SNP (transition)			27.5%	1.8E-65
C	3784060	3784060	1	1		T -> C					145	SNP (transition)			28.3%	5.4E-67
GGA	3791992	3791994	3	1		ATT -> GGA					370 -> 375	Substitution			25.4% -> 26.1%	1.3E-225
T	3791995	3791995	1	1		G -> T					380	SNP (transversion)			34.7%	4.0E-252
T	3792041	3792041	1	1		G -> T					420	SNP (transversion)			33.8%	1.1E-226
A	3792072	3792072	1	1		G -> A					418	SNP (transition)			48.6%	0.0
A	3886809	3886809	1	1		G -> A					142	SNP (transition)			38.7%	2.6E-60
A	3887153	3887153	1	1		C -> A					403	SNP (transversion)			25.6%	2.7E-80
C	3958980	3958980	1	1		T -> C					359	SNP (transition)			28.4%	2.7E-225
AC	3958982	3958983	2	1		CT -> AC					380 -> 386	Substitution			32.6% -> 33.2%	9.9E-295
A	3958987	3958987	1	1		G -> A					425	SNP (transition)			36.9%	0.0
C	3958993	3958993	1	1		G -> C					462	SNP (transversion)			37.2%	0.0
G	3958996	3958996	1	1		C -> G					478	SNP (transversion)			37.0%	0.0
T	3958999	3958998	0	1		+T					498	Insertion			35.3%	0.0
CG	3959001	3959002	2	1		TC -> CG					519 -> 535	Substitution			48.2% -> 49.5%	0.0
G	3959009	3959009	1	1		A -> G					595	SNP (transition)			56.0%	0.0
C	3959016	3959016	1	1		G -> C					645	SNP (transversion)			60.5%	0.0
A	3959023	3959023	1	1		G -> A					705	SNP (transition)			51.5%	0.0
C	3959025	3959025	1	1		T -> C					727	SNP (transition)			67.4%	0.0
A	3959093	3959093	1	1		G -> A					631	SNP (transition)			44.8%	0.0
CCA	3959096	3959098	3	1		TTT -> CCA					559 -> 591	Substitution			53.8% -> 55.5%	0.0
TCA	3959103	3959105	3	1		CTT -> TCA					490 -> 509	Substitution			44.9% -> 47.9%	0.0
G	3959107	3959107	1	1		A -> G					471	SNP (transition)			44.2%	0.0
C	3959109	3959109	1	1		G -> C					454	SNP (transversion)			40.3%	0.0
C	3959112	3959112	1	1		T -> C					430	SNP (transition)			37.2%	0.0
CG	3959115	3959116	2	1		AT -> CG					402 -> 415	Substitution			33.1% -> 34.9%	0.0
C	3959122	3959122	1	1		T -> C					362	SNP (transition)			26.0%	2.9E-222
G	3959124	3959124	1	1		C -> G					358	SNP (transversion)			26.0%	6.1E-220
GGA	3959627	3959629	3	1		TTC -> GGA					96 -> 97	Substitution			30.9% -> 31.3%	5.6E-51
G	3959632	3959632	1	1		T -> G					104	SNP (transversion)			33.7%	4.9E-64
G	3959634	3959634	1	1		C -> G					110	SNP (transversion)			37.3%	7.1E-73
C	3959648	3959648	1	1		T -> C					127	SNP (transition)			27.6%	1.6E-53
G	3959693	3959693	1	1		C -> G					300	SNP (transversion)			31.3%	6.5E-110
T	3959710	3959710	1	1		C -> T					307	SNP (transition)			28.3%	2.4E-140
G	3959721	3959721	1	1		T -> G					302	SNP (transversion)			36.1%	9.6E-211
A	3959746	3959746	1	1		G -> A					308	SNP (transition)			26.9%	4.1E-140
G	3972425	3972425	1	1		T -> G					353	SNP (transversion)			27.5%	9.4E-242
T	3972473	3972473	1	1		C -> T					282	SNP (transition)			29.8%	4.7E-213
C	4097444	4097443	0	1		+C					373	Insertion			98.9%	0.0
C	4097480	4097480	1	1		A -> C					296	SNP (transversion)			99.3%	0.0
CC	4097482	4097481	0	1		+CC					287 -> 290	Insertion			97.2% -> 97.6%	0.0
	4097486	4097486	1	1		-A					271	Deletion			100.0%	0.0
C	4097490	4097490	1	1		G -> C					266	SNP (transversion)			100.0%	0.0
TCTACCA	4097492	4097498	7	1		CGAGTGG -> TCTACCA					251 -> 261	Substitution			98.5% -> 99.2%	0.0
CT	4097500	4097501	2	1		GG -> CT					246	Substitution			99.2%	0.0
A	4097688	4097688	1	1		T -> A					126	SNP (transversion)			96.0%	0.0
AC	4097689	4097690	2	1		CA -> AC					127 -> 129	Substitution			75.6% -> 76.7%	1.5E-297
T	4097692	4097692	1	1		A -> T					137	SNP (transversion)			97.8%	0.0
G	4097695	4097695	1	1		A -> G					157	SNP (transition)			95.5%	0.0
G	4097699	4097698	0	1		+G					168	Insertion			89.9%	0.0
CTT	4097700	4097702	3	1		AGC -> CTT					178 -> 188	Substitution			99.4% -> 99.5%	0.0
C	4097705	4097705	1	1		G -> C					191	SNP (transversion)			99.5%	0.0
AGCCTG	4097711	4097710	0	1		+AGCCTG					208 -> 219	Insertion			99.0% -> 99.1%	0.0
A	4178498	4178498	1	1		G -> A					1337	SNP (transition)			30.1%	0.0
C	4178501	4178501	1	1		G -> C					1341	SNP (transversion)			32.0%	0.0
A	4178540	4178540	1	1		T -> A					1278	SNP (transversion)			58.3%	0.0
T	4178548	4178548	1	1		G -> T					1271	SNP (transversion)			43.2%	0.0
C	4178549	4178548	0	1		+C					1261	Insertion			38.5%	0.0
T	4178749	4178749	1	1		G -> T					523	SNP (transversion)			25.6%	1.6E-91
C	4179203	4179203	1	1		G -> C					1033	SNP (transversion)			42.0%	0.0
	4179206	4179206	1	1		(A)3 -> (A)2					1054	Deletion (tandem repeat)			38.3%	0.0
A	4179212	4179212	1	1		T -> A					1075	SNP (transversion)			54.9%	0.0
C	4179251	4179251	1	1		G -> C					1146	SNP (transversion)			33.7%	0.0
C	4179254	4179254	1	1		T -> C					1139	SNP (transition)			33.4%	0.0
T	4197429	4197429	1	1		C -> T					202	SNP (transition)			25.7%	8.3E-72
G	4197456	4197456	1	1		C -> G					262	SNP (transversion)			28.2%	7.3E-127
C	4197465	4197465	1	1		A -> C					259	SNP (transversion)			33.2%	9.6E-146
A	4197470	4197470	1	1		G -> A					262	SNP (transition)			32.4%	4.8E-143
CC	4197472	4197473	2	1		AG -> CC					265	Substitution			32.1%	1.5E-142
T	4197477	4197477	1	1		C -> T					270	SNP (transition)			32.6%	3.1E-148
A	4197492	4197492	1	1		T -> A					280	SNP (transversion)			32.1%	3.6E-124
G	4197709	4197709	1	1		A -> G					59	SNP (transition)			32.2%	5.1E-35
C	4197713	4197713	1	1		T -> C					63	SNP (transition)			34.9%	1.9E-43
T	4197720	4197720	1	1		G -> T					82	SNP (transversion)			25.6%	5.8E-32
G	4197826	4197826	1	1		C -> G					714	SNP (transversion)			38.8%	0.0
C	4197829	4197829	1	1		T -> C					823	SNP (transition)			47.3%	0.0
A	4197835	4197835	1	1		C -> A					911	SNP (transversion)			34.7%	0.0
TG	4197839	4197838	0	1		+TG					916	Insertion			33.2%	0.0
C	4197841	4197841	1	1		T -> C					928	SNP (transition)			26.8%	0.0
A	4197850	4197850	1	1		G -> A					947	SNP (transition)			25.8%	0.0
G	4197855	4197855	1	1		A -> G					963	SNP (transition)			25.3%	0.0
A	4197861	4197861	1	1		T -> A					966	SNP (transversion)			25.8%	0.0
G	4197866	4197866	1	1		C -> G					983	SNP (transversion)			26.3%	0.0
G	4211564	4211564	1	1		A -> G					274	SNP (transition)			41.2%	1.3E-305
T	4211567	4211567	1	1		A -> T					276	SNP (transversion)			33.0%	1.9E-235
TTGT	4211569	4211572	4	1		CGCG -> TTGT					270 -> 286	Substitution			26.0% -> 31.1%	3.4E-193
T	4211574	4211574	1	1		G -> T					287	SNP (transversion)			26.1%	6.3E-193
C	4211580	4211580	1	1		A -> C					287	SNP (transversion)			35.2%	1.9E-244
T	4211590	4211590	1	1		C -> T					294	SNP (transition)			51.0%	0.0
A	4211602	4211602	1	1		C -> A					264	SNP (transversion)			51.5%	6.3E-290
G	4211671	4211671	1	1		C -> G					292	SNP (transversion)			26.7%	1.2E-193
A	4211680	4211680	1	1		G -> A					274	SNP (transition)			31.8%	8.8E-215
G	4211684	4211684	1	1		A -> G					261	SNP (transition)			29.9%	2.7E-190
T	4211687	4211687	1	1		C -> T					261	SNP (transition)			33.3%	5.4E-217
T	4211701	4211701	1	1		G -> T					305	SNP (transversion)			27.5%	2.1E-159
G	4211703	4211702	0	1		+G					322	Insertion			40.1%	0.0
G	4211724	4211724	1	1		T -> G					411	SNP (transversion)			25.8%	1.2E-260
T	4211757	4211757	1	1		C -> T					484	SNP (transition)			35.5%	0.0
T	4211758	4211758	1	1		C -> T					494	SNP (transition)			27.7%	0.0
A	4211793	4211793	1	1		C -> A					571	SNP (transversion)			34.5%	0.0
C	4211798	4211798	1	1		T -> C					563	SNP (transition)			56.1%	0.0
G	4211802	4211802	1	1		C -> G					553	SNP (transversion)			39.6%	0.0
G	4260436	4260436	1	1		A -> G					486	SNP (transition)			34.2%	0.0
C	4260450	4260450	1	1		T -> C					541	SNP (transition)			39.4%	0.0
	4260453	4260453	1	1		(T)4 -> (T)3					559	Deletion (tandem repeat)			36.9%	5.7E-317
G	4325739	4325739	1	1		C -> G					143	SNP (transversion)			32.2%	1.4E-82
C	4325753	4325753	1	1		T -> C					146	SNP (transition)			30.1%	8.3E-56
T	4325756	4325756	1	1		G -> T					147	SNP (transversion)			40.8%	3.3E-73
G	4325776	4325776	1	1		C -> G					164	SNP (transversion)			31.7%	4.9E-129
A	4325779	4325779	1	1		C -> A					163	SNP (transversion)			27.0%	8.1E-106
A	4325856	4325856	1	1		T -> A					100	SNP (transversion)			25.0%	2.3E-9
T	4325877	4325877	1	1		G -> T					78	SNP (transversion)			97.4%	6.4E-81
A	4325965	4325965	1	1		T -> A					52	SNP (transversion)			26.9%	6.3E-14
C	4325965	4325965	1	1		T -> C					52	SNP (transition)			40.4%	2.3E-16
T	4325966	4325966	1	1		G -> T					47	SNP (transversion)			25.5%	1.1E-10
GG	4325969	4325970	2	1		TT -> GG					33 -> 37	Substitution			27.0% -> 27.3%	1.7E-9
A	4325988	4325988	1	1		T -> A					34	SNP (transversion)			38.2%	2.7E-10
A	4325992	4325992	1	1		G -> A					37	SNP (transition)			27.0%	2.1E-9
C	4326025	4326024	0	1		+C					43	Insertion			39.5%	7.1E-20
T	4326027	4326027	1	1		C -> T					46	SNP (transition)			43.5%	2.5E-18
A	4326030	4326030	1	1		G -> A					44	SNP (transition)			43.2%	3.1E-19
A	4326034	4326034	1	1		G -> A					44	SNP (transition)			34.1%	5.2E-18
CC	4326035	4326036	2	1		TA -> CC					45 -> 47	Substitution			44.4% -> 46.8%	2.1E-27
C	4326038	4326038	1	1		T -> C					51	SNP (transition)			31.4%	2.3E-15
A	4326040	4326040	1	1		G -> A					56	SNP (transition)			28.6%	3.6E-16
A	4326041	4326041	1	1		T -> A					56	SNP (transversion)			32.1%	4.8E-19
T	4326043	4326043	1	1		G -> T					60	SNP (transversion)			31.7%	5.6E-11
T	4326061	4326061	1	1		C -> T					84	SNP (transition)			91.7%	5.1E-76
T	4326295	4326295	1	1		C -> T					190	SNP (transition)			61.6%	6.1E-193
A	4326354	4326354	1	1		C -> A					86	SNP (transversion)			31.4%	2.4E-22
G	4326361	4326361	1	1		A -> G					85	SNP (transition)			40.0%	1.8E-38
C	4326365	4326365	1	1		A -> C					83	SNP (transversion)			47.0%	3.4E-51
C	4326441	4326441	1	1		T -> C					253	SNP (transition)			51.0%	2.0E-184
A	4326473	4326473	1	1		G -> A					289	SNP (transition)			31.8%	3.1E-181
CA	4326655	4326656	2	1		GG -> CA					388 -> 392	Substitution			28.1% -> 28.4%	9.5E-104
C	4326658	4326658	1	1		T -> C					384	SNP (transition)			27.1%	8.8E-104
C	4326690	4326690	1	1		T -> C					301	SNP (transition)			31.2%	1.6E-73
G	4326699	4326699	1	1		A -> G					264	SNP (transition)			32.2%	6.4E-68
C	4326840	4326840	1	1		T -> C					30	SNP (transition)			30.0%	6.9E-18
T	4326841	4326841	1	1		C -> T					29	SNP (transition)			27.6%	1.7E-16
AC	4326843	4326844	2	1		CT -> AC					27 -> 28	Substitution			28.6% -> 29.6%	7.5E-16
G	4326846	4326846	1	1		C -> G					30	SNP (transversion)			26.7%	5.7E-18
G	4326848	4326848	1	1		C -> G					30	SNP (transversion)			26.7%	3.6E-17
G	4326850	4326850	1	1		A -> G					31	SNP (transition)			32.3%	4.3E-20
C	4326876	4326876	1	1		T -> C					84	SNP (transition)			26.2%	1.1E-18
A	4326965	4326965	1	1		G -> A					215	SNP (transition)			35.3%	2.1E-36
T	4327171	4327171	1	1		C -> T					319	SNP (transition)			67.1%	0.0
A	4327186	4327186	1	1		G -> A					282	SNP (transition)			49.6%	1.5E-225
T	4327394	4327394	1	1		C -> T					163	SNP (transition)			36.2%	1.2E-85
TA	4346656	4346657	2	1		CG -> TA					240 -> 243	Substitution			34.2% -> 35.0%	5.6E-228
C	4346661	4346661	1	1		G -> C					239	SNP (transversion)			32.2%	2.9E-206
TG	4346664	4346665	2	1		GA -> TG					237 -> 239	Substitution			28.5% -> 30.0%	5.2E-178
A	4346667	4346667	1	1		G -> A					237	SNP (transition)			28.3%	3.4E-175
T	4346669	4346669	1	1		A -> T					238	SNP (transversion)			27.7%	5.8E-172
G	4346671	4346671	1	1		C -> G					237	SNP (transversion)			27.0%	6.0E-166
	4382167	4382167	1	1		-C					651	Deletion			50.5%	0.0
G	4382174	4382174	1	1		A -> G					669	SNP (transition)			53.4%	0.0
AAC	4382182	4382184	3	1		TGT -> AAC					694 -> 700	Substitution			53.2% -> 54.0%	0.0
A	4382191	4382191	1	1		C -> A					704	SNP (transversion)			53.3%	0.0
A	4382195	4382195	1	1		G -> A					709	SNP (transition)			53.5%	0.0
T	4382216	4382216	1	1		C -> T					640	SNP (transition)			48.0%	0.0
C	4382220	4382220	1	1		G -> C					637	SNP (transversion)			47.7%	0.0
A	4382227	4382226	0	1		(A)3 -> (A)4					616	Insertion (tandem repeat)			45.0%	0.0
AG	4382239	4382240	2	1		GA -> AG					595 -> 599	Substitution			42.4%	0.0
CT	4382254	4382255	2	1		TC -> CT					558 -> 562	Substitution			40.0% -> 40.5%	0.0
C	4382262	4382262	1	1		T -> C					526	SNP (transition)			39.0%	0.0
G	4382276	4382276	1	1		A -> G					508	SNP (transition)			35.0%	0.0
CCC	4509804	4509806	3	1		TGT -> CCC					113 -> 115	Substitution			75.7% -> 77.0%	1.4E-278
CAT	4509808	4509810	3	1		TGG -> CAT					107 -> 115	Substitution			68.8% -> 73.0%	1.9E-227
T	4509812	4509812	1	1		A -> T					103	SNP (transversion)			68.0%	9.4E-212
AC	4509814	4509815	2	1		GA -> AC					91	Substitution			62.6% -> 63.7%	3.5E-175
GTGCACACC	4509818	4509826	9	1		TGAAGGGAG -> GTGCACACC					74 -> 91	Substitution			31.1% -> 56.0%	2.6E-62
G	4510966	4510966	1	1		T -> G					38	SNP (transversion)			31.6%	2.7E-33
G	4510968	4510968	1	1		A -> G					44	SNP (transition)			43.2%	5.6E-57
G	4510970	4510970	1	1		C -> G					45	SNP (transversion)			55.6%	3.2E-78
GGCTCG	4510973	4510978	6	1		TAGAAT -> GGCTCG					48 -> 51	Substitution			60.0% -> 72.5%	4.7E-92
C	4521629	4521628	0	1		+C					167	Insertion			99.4%	0.0
T	4533685	4533684	0	1		+T					427	Insertion			99.8%	0.0

(v.1.17.2)

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