P. umsongensis GO16 ttdR KO ALE_Butyrate Whole-Genome Sequencing raw data

Selected Cell

Cell:

Value:

Sheet1

A

B

C

D

E

F

G

H

I

J

K

L

M

N

O

P

Q

1401

1402

1403

1404

1405

1406

1407

1408

1409

1410

1411

1412

1413

1414

1415

1416

1417

1418

1419

1420

1421

1422

1423

1424

1425

1426

1427

1428

1429

1430

1431

1432

1433

1434

1435

1436

1437

1438

1439

1440

1441

1442

1443

1444

1445

1446

1447

1448

1449

1450

1451

1452

1453

1454

1455

1456

1457

1458

1459

1460

1461

1462

1463

1464

1465

1466

1467

1468

1469

1470

1471

1472

1473

1474

1475

1476

1477

1478

1479

1480

1481

1482

1483

1484

1485

1486

1487

1488

1489

1490

1491

1492

1493

1494

1495

1496

1497

1498

1499

1500

1501

1502

1503

1504

1505

1506

1507

1508

1509

1510

1511

1512

1513

1514

1515

1516

1517

1518

1519

1520

1521

1522

1523

1524

1525

1526

1527

1528

1529

1530

1531

1532

1533

1534

1535

1536

1537

1538

1539

1540

1541

1542

1543

1544

1545

1546

1547

1548

1549

1550

1551

1552

1553

1554

1555

1556

1557

1558

1559

1560

1561

1562

1563

1564

1565

1566

1567

1568

1569

1570

1571

1572

1573

1574

1575

1576

1577

1578

1579

1580

1581

1582

1583

1584

1585

1586

1587

1588

1589

1590

1591

1592

1593

1594

1595

1596

1597

1598

1599

1600

T	2907207	2907207	1	1		G -> T					253	SNP (transversion)			38.3%	1.2E-11
A	2907220	2907220	1	1		G -> A					270	SNP (transition)			29.3%	2.2E-8
T	2907248	2907248	1	1		C -> T					249	SNP (transition)			35.3%	1.1E-8
G	2907286	2907286	1	1		A -> G					172	SNP (transition)			36.0%	3.5E-25
GTA	2907333	2907335	3	1		TGG -> GTA					85	Substitution			38.8%	3.0E-55
C	2907391	2907391	1	1		T -> C					80	SNP (transition)			33.8%	9.2E-34
TT	2907520	2907519	0	1		+TT					176	Insertion			25.0%	3.9E-104
	2907527	2907528	2	1		-CT					180 -> 184	Deletion			25.0% -> 25.6%	7.5E-86
CA	2907531	2907532	2	1		TC -> CA					183 -> 185	Substitution			25.4% -> 25.7%	3.9E-121
CT	2907534	2907535	2	1		GC -> CT					186 -> 188	Substitution			25.0% -> 25.3%	2.0E-106
	2907740	2907740	1	1		(A)3 -> (A)2					138	Deletion (tandem repeat)			26.8%	3.6E-14
T	2907775	2907775	1	1		G -> T					155	SNP (transversion)			45.2%	1.2E-144
A	2907852	2907852	1	1		T -> A					81	SNP (transversion)			42.0%	4.6E-23
A	2907956	2907956	1	1		G -> A					261	SNP (transition)			54.8%	2.4E-72
T	2907984	2907984	1	1		C -> T					287	SNP (transition)			31.0%	8.8E-23
A	2907997	2907997	1	1		C -> A					280	SNP (transversion)			46.8%	1.5E-44
T	2908037	2908037	1	1		C -> T					292	SNP (transition)			40.4%	2.2E-42
G	2908173	2908173	1	1		T -> G					102	SNP (transversion)			40.2%	3.5E-46
G	2908230	2908230	1	1		T -> G					165	SNP (transversion)			33.3%	9.7E-51
T	2908307	2908307	1	1		A -> T					110	SNP (transversion)			30.0%	3.5E-42
T	2908324	2908324	1	1		C -> T					112	SNP (transition)			49.1%	2.7E-89
T	2909917	2909917	1	1		C -> T					225	SNP (transition)			36.0%	8.8E-133
A	2910033	2910033	1	1		G -> A					180	SNP (transition)			28.3%	7.5E-63
A	2910073	2910073	1	1		T -> A					221	SNP (transversion)			36.7%	2.4E-62
C	2910091	2910091	1	1		T -> C					275	SNP (transition)			36.4%	6.2E-184
A	2910118	2910117	0	1		(A)3 -> (A)4					337	Insertion (tandem repeat)			26.4%	8.9E-176
G	2910143	2910143	1	1		C -> G					321	SNP (transversion)			38.0%	6.1E-300
T	2929339	2929339	1	1		C -> T					371	SNP (transition)			28.0%	2.4E-239
C	2929387	2929387	1	1		T -> C					451	SNP (transition)			49.7%	0.0
C	2929394	2929394	1	1		A -> C					452	SNP (transversion)			49.6%	0.0
T	2929498	2929498	1	1		C -> T					588	SNP (transition)			58.8%	0.0
T	2929502	2929502	1	1		C -> T					582	SNP (transition)			62.4%	0.0
T	2929507	2929507	1	1		C -> T					582	SNP (transition)			61.3%	0.0
A	2966213	2966213	1	1		T -> A					201	SNP (transversion)			25.4%	1.1E-35
T	2968008	2968008	1	1		C -> T					126	SNP (transition)			96.8%	0.0
G	2968023	2968023	1	1		A -> G					106	SNP (transition)			74.5%	2.9E-244
C	2968027	2968027	1	1		T -> C					101	SNP (transition)			75.2%	1.3E-235
A	2968039	2968039	1	1		G -> A					104	SNP (transition)			58.7%	1.6E-172
G	2968051	2968051	1	1		A -> G					102	SNP (transition)			61.8%	1.2E-167
	2968055	2968055	1	1		-A					100	Deletion			57.0%	5.1E-109
C	2968065	2968065	1	1		A -> C					88	SNP (transversion)			50.0%	2.5E-107
ATG	2968077	2968079	3	1		GAA -> ATG					69	Substitution			27.5%	1.0E-35
T	2968086	2968086	1	1		C -> T					60	SNP (transition)			25.0%	1.5E-24
T	2968378	2968378	1	1		C -> T					128	SNP (transition)			52.3%	3.7E-33
T	2968460	2968460	1	1		C -> T					113	SNP (transition)			28.3%	6.6E-37
	2968462	2968462	1	1		(C)3 -> (C)2					117	Deletion (tandem repeat)			27.4%	1.0E-12
G	2968476	2968476	1	1		A -> G					118	SNP (transition)			39.8%	4.8E-99
A	2968492	2968492	1	1		G -> A					156	SNP (transition)			40.4%	1.5E-151
T	2968546	2968546	1	1		G -> T					218	SNP (transversion)			25.7%	1.1E-82
G	2968612	2968612	1	1		T -> G					286	SNP (transversion)			43.4%	6.2E-215
A	2968615	2968615	1	1		C -> A					289	SNP (transversion)			28.0%	2.3E-98
T	2968625	2968625	1	1		G -> T					292	SNP (transversion)			25.3%	2.3E-86
A	2968634	2968648	15	1		GTGGTAGCGAGCCTG -> A					288 -> 304	Deletion			25.0% -> 26.4%	2.0E-19
A	2968709	2968709	1	1		G -> A					291	SNP (transition)			25.4%	5.3E-101
G	2969383	2969383	1	1		A -> G					164	SNP (transition)			30.5%	3.6E-98
G	2975583	2975583	1	1		A -> G					469	SNP (transition)			28.8%	0.0
C	2975607	2975607	1	1		A -> C					478	SNP (transversion)			44.6%	0.0
A	2975646	2975646	1	1		G -> A					453	SNP (transition)			39.3%	0.0
C	2975656	2975656	1	1		T -> C					460	SNP (transition)			33.5%	0.0
G	2975663	2975663	1	1		A -> G					454	SNP (transition)			28.2%	4.3E-320
C	3007217	3007217	1	1		T -> C					101	SNP (transition)			26.7%	2.4E-57
A	3007218	3007218	1	1		T -> A					100	SNP (transversion)			36.0%	1.9E-81
C	3163642	3163642	1	1		A -> C					48	SNP (transversion)			27.1%	3.7E-27
C	3163643	3163643	1	1		T -> C					49	SNP (transition)			34.7%	1.6E-35
TGGCGG	3163645	3163650	6	1		GTTGAT -> TGGCGG					49 -> 52	Substitution			34.6% -> 44.9%	1.2E-44
A	3163652	3163652	1	1		G -> A					54	SNP (transition)			64.8%	1.8E-105
GC	3163659	3163660	2	1		CG -> GC					67 -> 70	Substitution			23.9% -> 31.4%	2.3E-42
T	3163662	3163662	1	1		A -> T					70	SNP (transversion)			38.6%	2.1E-54
A	3163666	3163665	0	1		+A					71	Insertion			29.6%	6.5E-44
CCC	3163667	3163669	3	1		GTG -> CCC					73	Substitution			32.9%	6.9E-49
CGG	3163671	3163673	3	1		GAA -> CGG					73 -> 74	Substitution			31.1% -> 31.5%	1.5E-48
CA	3163676	3163677	2	1		AT -> CA					75	Substitution			32.0%	1.5E-48
TCA	3163679	3163681	3	1		AAC -> TCA					75	Substitution			32.0%	2.3E-48
G	3163683	3163683	1	1		A -> G					78	SNP (transition)			33.3%	5.1E-53
TTT	3163685	3163687	3	1		GAA -> TTT					78 -> 80	Substitution			30.0% -> 30.8%	4.6E-48
T	3163697	3163697	1	1		G -> T					86	SNP (transversion)			36.0%	3.4E-64
	3163718	3163718	1	1		-G					94	Deletion			27.7%	1.9E-27
T	3163768	3163768	1	1		G -> T					105	SNP (transversion)			34.3%	7.0E-52
G	3163778	3163778	1	1		A -> G					94	SNP (transition)			25.5%	2.8E-36
C	3163796	3163796	1	1		A -> C					62	SNP (transversion)			30.6%	1.2E-32
G	3163802	3163802	1	1		C -> G					53	SNP (transversion)			39.6%	1.7E-32
A	3163804	3163804	1	1		T -> A					52	SNP (transversion)			32.7%	3.4E-23
T	3163833	3163833	1	1		A -> T					38	SNP (transversion)			34.2%	1.0E-28
G	3163834	3163834	1	1		T -> G					37	SNP (transversion)			48.6%	1.7E-44
A	3163851	3163851	1	1		C -> A					44	SNP (transversion)			34.1%	1.5E-16
G	3163863	3163863	1	1		A -> G					63	SNP (transition)			47.6%	8.2E-67
C	3163905	3163905	1	1		A -> C					163	SNP (transversion)			25.2%	6.6E-81
T	3163910	3163910	1	1		G -> T					163	SNP (transversion)			46.0%	1.2E-170
C	3163913	3163913	1	1		G -> C					163	SNP (transversion)			35.0%	3.9E-127
C	3163918	3163918	1	1		T -> C					168	SNP (transition)			30.4%	9.0E-85
G	3163923	3163923	1	1		A -> G					166	SNP (transition)			39.2%	2.2E-103
G	3163924	3163924	1	1		A -> G					167	SNP (transition)			30.5%	6.3E-85
A	3163933	3163933	1	1		C -> A					170	SNP (transversion)			30.0%	2.1E-79
T	3163956	3163956	1	1		C -> T					187	SNP (transition)			38.5%	1.1E-113
G	3224984	3224984	1	1		T -> G					102	SNP (transversion)			26.5%	7.0E-13
C	3303928	3303928	1	1		G -> C					56	SNP (transversion)			32.1%	1.3E-38
C	3303931	3303931	1	1		G -> C					68	SNP (transversion)			38.2%	6.5E-55
T	3311298	3311298	1	1		G -> T					202	SNP (transversion)			46.5%	1.4E-120
A	3311934	3311934	1	1		C -> A					387	SNP (transversion)			34.9%	1.4E-271
A	3311937	3311937	1	1		G -> A					388	SNP (transition)			35.3%	8.5E-263
C	3311954	3311954	1	1		G -> C					401	SNP (transversion)			29.9%	6.5E-268
C	3311970	3311970	1	1		A -> C					384	SNP (transversion)			38.8%	0.0
T	3311987	3311987	1	1		C -> T					361	SNP (transition)			36.8%	0.0
T	3312001	3312001	1	1		A -> T					361	SNP (transversion)			43.5%	0.0
A	3312017	3312017	1	1		G -> A					332	SNP (transition)			27.1%	7.8E-215
	3312027	3312027	1	1		-G					302	Deletion			33.4%	3.1E-171
A	3312039	3312039	1	1		C -> A					273	SNP (transversion)			27.5%	2.4E-172
A	3312044	3312044	1	1		G -> A					256	SNP (transition)			32.8%	2.5E-175
C	3312049	3312049	1	1		T -> C					245	SNP (transition)			36.3%	4.0E-217
C	3312089	3312089	1	1		T -> C					244	SNP (transition)			30.3%	1.4E-188
C	3312091	3312091	1	1		T -> C					246	SNP (transition)			29.3%	5.0E-175
A	3350700	3350700	1	1		G -> A					81	SNP (transition)			45.7%	9.0E-74
C	3350704	3350704	1	1		T -> C					75	SNP (transition)			38.7%	3.9E-24
A	3350740	3350740	1	1		T -> A					61	SNP (transversion)			44.3%	6.6E-22
G	3350770	3350770	1	1		A -> G					118	SNP (transition)			33.1%	1.2E-47
C	3350783	3350783	1	1		A -> C					132	SNP (transversion)			29.5%	1.2E-41
A	3350874	3350874	1	1		G -> A					301	SNP (transition)			42.9%	4.2E-274
T	3351026	3351026	1	1		A -> T					650	SNP (transversion)			28.2%	1.2E-184
G	3351046	3351046	1	1		T -> G					619	SNP (transversion)			31.0%	7.5E-203
C	3351067	3351067	1	1		G -> C					603	SNP (transversion)			30.3%	1.6E-299
C	3351077	3351077	1	1		T -> C					593	SNP (transition)			34.1%	1.8E-322
A	3351080	3351080	1	1		C -> A					601	SNP (transversion)			40.9%	0.0
G	3351127	3351127	1	1		A -> G					590	SNP (transition)			27.1%	2.3E-143
G	3351211	3351211	1	1		T -> G					307	SNP (transversion)			34.5%	4.6E-98
C	3351215	3351215	1	1		T -> C					295	SNP (transition)			31.5%	5.8E-91
A	3351281	3351281	1	1		G -> A					419	SNP (transition)			26.0%	8.7E-56
T	3351372	3351372	1	1		C -> T					204	SNP (transition)			31.9%	6.5E-46
G	3351373	3351373	1	1		C -> G					202	SNP (transversion)			32.2%	1.6E-58
G	3431479	3431479	1	1		A -> G					103	SNP (transition)			33.0%	2.7E-65
A	3431526	3431526	1	1		G -> A					67	SNP (transition)			29.9%	5.4E-40
C	3431543	3431543	1	1		A -> C					60	SNP (transversion)			30.0%	6.2E-22
T	3431620	3431620	1	1		A -> T					183	SNP (transversion)			46.4%	3.6E-168
A	3431621	3431621	1	1		C -> A					185	SNP (transversion)			31.9%	1.1E-128
T	3431660	3431660	1	1		C -> T					284	SNP (transition)			60.6%	0.0
T	3431667	3431667	1	1		C -> T					310	SNP (transition)			26.5%	6.9E-195
T	3431786	3431786	1	1		C -> T					573	SNP (transition)			43.8%	0.0
A	3431826	3431826	1	1		G -> A					616	SNP (transition)			56.3%	0.0
G	3431832	3431832	1	1		A -> G					631	SNP (transition)			32.6%	0.0
G	3431859	3431859	1	1		T -> G					618	SNP (transversion)			29.1%	5.1E-273
	3431870	3431870	1	1		(G)5 -> (G)4					590	Deletion (tandem repeat)			25.1%	2.9E-113
	3431886	3431886	1	1		(C)4 -> (C)3					501	Deletion (tandem repeat)			39.5%	2.3E-157
T	3431923	3431923	1	1		C -> T					380	SNP (transition)			30.0%	2.6E-119
G	3431976	3431976	1	1		A -> G					261	SNP (transition)			46.7%	9.6E-217
T	3432011	3432011	1	1		C -> T					222	SNP (transition)			36.9%	2.9E-119
T	3432023	3432023	1	1		G -> T					178	SNP (transversion)			56.2%	4.0E-179
A	3432041	3432041	1	1		T -> A					177	SNP (transversion)			72.9%	1.2E-266
A	3435771	3435771	1	1		G -> A					201	SNP (transition)			27.9%	9.2E-113
A	3435774	3435774	1	1		G -> A					199	SNP (transition)			26.6%	1.3E-105
C	3435776	3435776	1	1		T -> C					197	SNP (transition)			25.4%	1.6E-98
A	3435792	3435792	1	1		T -> A					201	SNP (transversion)			26.9%	1.1E-91
G	3435805	3435805	1	1		T -> G					195	SNP (transversion)			25.1%	2.4E-96
A	3435807	3435807	1	1		C -> A					194	SNP (transversion)			26.8%	1.2E-98
T	3435809	3435809	1	1		A -> T					193	SNP (transversion)			26.4%	2.1E-96
AC	3435817	3435818	2	1		TA -> AC					193 -> 194	Substitution			26.4% -> 26.8%	2.7E-106
	3435829	3435839	11	1		-TATCAGGCCGC					188 -> 192	Deletion			26.0% -> 26.6%	1.8E-64
T	3435841	3435841	1	1		A -> T					187	SNP (transversion)			27.3%	3.2E-97
T	3435844	3435844	1	1		G -> T					187	SNP (transversion)			26.7%	7.9E-100
T	3435874	3435874	1	1		A -> T					172	SNP (transversion)			28.5%	1.5E-94
T	3435877	3435877	1	1		C -> T					171	SNP (transition)			26.9%	1.6E-87
C	3435884	3435884	1	1		G -> C					158	SNP (transversion)			26.6%	5.3E-84
G	3451491	3451491	1	1		A -> G					196	SNP (transition)			26.0%	1.5E-126
C	3451493	3451493	1	1		T -> C					193	SNP (transition)			27.5%	5.3E-117
G	3451518	3451518	1	1		C -> G					203	SNP (transversion)			44.3%	1.9E-247
T	3452807	3452807	1	1		A -> T					251	SNP (transversion)			26.3%	5.2E-157
A	3452814	3452814	1	1		G -> A					247	SNP (transition)			39.3%	3.6E-192
G	3452816	3452816	1	1		T -> G					246	SNP (transversion)			30.1%	7.0E-181
C	3452818	3452818	1	1		A -> C					248	SNP (transversion)			31.9%	1.9E-187
A	3452830	3452830	1	1		G -> A					261	SNP (transition)			31.8%	9.1E-197
G	3452832	3452832	1	1		A -> G					261	SNP (transition)			33.0%	2.1E-205
G	3452841	3452841	1	1		A -> G					257	SNP (transition)			49.0%	1.4E-277
C	3680832	3680832	1	1		T -> C					403	SNP (transition)			38.2%	9.7E-256
A	3680841	3680841	1	1		G -> A					393	SNP (transition)			41.5%	6.7E-278
A	3680859	3680859	1	1		G -> A					255	SNP (transition)			54.5%	1.6E-259
T	3714877	3714877	1	1		G -> T					233	SNP (transversion)			27.9%	1.6E-85
G	3729214	3729214	1	1		C -> G					184	SNP (transversion)			36.4%	4.7E-184
A	3729217	3729217	1	1		C -> A					185	SNP (transversion)			35.1%	2.3E-177
GGAG	3729221	3729224	4	1		TTTC -> GGAG					173 -> 176	Substitution			30.5% -> 31.3%	1.1E-149
G	3729227	3729227	1	1		A -> G					167	SNP (transition)			30.5%	8.7E-136
C	3729229	3729229	1	1		G -> C					161	SNP (transversion)			29.2%	7.1E-129
GT	3729231	3729232	2	1		CA -> GT					158 -> 159	Substitution			27.8% -> 28.3%	2.6E-115
GG	3729234	3729235	2	1		AA -> GG					155 -> 158	Substitution			27.1% -> 27.8%	1.5E-109
T	3729245	3729245	1	1		A -> T					126	SNP (transversion)			37.3%	1.2E-78
T	3729253	3729252	0	1		(T)3 -> (T)4					107	Insertion (tandem repeat)			42.1%	8.5E-83
T	3729294	3729294	1	1		A -> T					74	SNP (transversion)			28.4%	5.9E-31
A	3729330	3729330	1	1		G -> A					72	SNP (transition)			26.4%	1.3E-14
AC	3729647	3729648	2	1		TT -> AC					16 -> 18	Substitution			50.0% -> 55.6%	2.8E-10
CAC	3729652	3729654	3	1		TTT -> CAC					22 -> 24	Substitution			63.6% -> 66.7%	3.0E-23
T	3729656	3729656	1	1		G -> T					27	SNP (transversion)			70.4%	2.1E-32
GGG	3729658	3729660	3	1		TTT -> GGG					25 -> 26	Substitution			69.2% -> 72.0%	1.2E-34
T	3729662	3729662	1	1		C -> T					26	SNP (transition)			73.1%	7.9E-35
C	3729664	3729664	1	1		T -> C					28	SNP (transition)			71.4%	2.9E-36
	3729669	3729670	2	1		-CA					31	Deletion			64.5%	2.1E-11
T	3729672	3729672	1	1		C -> T					32	SNP (transition)			90.6%	3.8E-52
A	3729679	3729679	1	1		G -> A					37	SNP (transition)			100.0%	1.6E-89
T	3729681	3729680	0	1		+T					38	Insertion			97.4%	3.0E-84
A	3730316	3730316	1	1		G -> A					372	SNP (transition)			30.4%	1.3E-65
AGA	3756590	3756592	3	1		CCC -> AGA					202 -> 206	Substitution			28.4% -> 28.7%	1.3E-71
C	3783803	3783803	1	1		T -> C					235	SNP (transition)			31.1%	5.7E-187
CG	3783815	3783816	2	1		TA -> CG					241 -> 244	Substitution			35.2% -> 35.7%	4.6E-217
C	3783820	3783819	0	1		(C)3 -> (C)4					241	Insertion (tandem repeat)			34.0%	1.6E-205

(v.1.17.2)

About FAIRDOMHub | Funding and Programmes | Credits | Terms & Conditions | Imprint | Cookie preferences

Copyright © 2008 - 2025 The University of Manchester and HITS gGmbH