P. umsongensis GO16 ttdR KO ALE_Butyrate Whole-Genome Sequencing raw data

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G	1677476	1677476	1	1		A -> G					354	SNP (transition)			38.7%	1.2E-228
A	1677522	1677522	1	1		T -> A					257	SNP (transversion)			25.3%	1.3E-101
C	1677524	1677524	1	1		G -> C					238	SNP (transversion)			25.2%	8.8E-100
A	1744353	1744353	1	1		G -> A					329	SNP (transition)			28.6%	2.8E-189
G	1744424	1744424	1	1		A -> G					415	SNP (transition)			33.3%	1.3E-301
C	1744435	1744435	1	1		G -> C					388	SNP (transversion)			25.5%	3.1E-223
G	1744490	1744490	1	1		A -> G					327	SNP (transition)			39.4%	2.7E-255
T	1744525	1744525	1	1		C -> T					341	SNP (transition)			28.4%	1.1E-108
C	1744632	1744632	1	1		A -> C					739	SNP (transversion)			39.5%	0.0
	1744740	1744740	1	1		-G					352	Deletion			29.8%	2.5E-161
A	1744750	1744750	1	1		G -> A					297	SNP (transition)			35.0%	3.2E-220
A	1744760	1744760	1	1		C -> A					236	SNP (transversion)			26.3%	7.9E-123
G	1960130	1960130	1	1		C -> G					557	SNP (transversion)			25.3%	2.4E-218
A	1960135	1960135	1	1		G -> A					561	SNP (transition)			25.3%	7.6E-178
CC	1960138	1960138	1	1		A -> CC					560 -> 562	Insertion			25.1% -> 25.2%	5.7E-218
T	1960140	1960140	1	1		G -> T					564	SNP (transversion)			25.2%	1.9E-191
G	1960144	1960144	1	1		T -> G					555	SNP (transversion)			26.1%	9.3E-227
C	1960149	1960149	1	1		T -> C					550	SNP (transition)			27.3%	9.9E-238
A	1960152	1960152	1	1		G -> A					545	SNP (transition)			27.9%	1.4E-242
CA	1960167	1960168	2	1		TT -> CA					577 -> 578	Substitution			29.6% -> 30.1%	6.1E-269
T	1960180	1960180	1	1		G -> T					639	SNP (transversion)			31.5%	1.5E-312
A	2084122	2084122	1	1		C -> A					630	SNP (transversion)			30.6%	0.0
C	2084130	2084130	1	1		T -> C					669	SNP (transition)			32.6%	0.0
C	2084145	2084145	1	1		G -> C					709	SNP (transversion)			35.1%	0.0
G	2084188	2084188	1	1		T -> G					654	SNP (transversion)			31.3%	0.0
C	2084199	2084199	1	1		A -> C					638	SNP (transversion)			28.7%	0.0
G	2084201	2084201	1	1		A -> G					646	SNP (transition)			28.0%	0.0
C	2159792	2159792	1	1		T -> C					224	SNP (transition)			25.9%	4.8E-103
TC	2159899	2159900	2	1		GT -> TC					280 -> 281	Substitution			26.0% -> 26.1%	1.3E-168
T	2160003	2160003	1	1		G -> T					261	SNP (transversion)			42.5%	1.2E-235
A	2160030	2160030	1	1		C -> A					269	SNP (transversion)			34.2%	4.8E-203
A	2160032	2160032	1	1		C -> A					271	SNP (transversion)			29.9%	2.7E-173
T	2161916	2161916	1	1		C -> T					275	SNP (transition)			25.1%	1.1E-148
C	2161931	2161931	1	1		G -> C					290	SNP (transversion)			36.6%	3.4E-269
C	2161934	2161934	1	1		T -> C					287	SNP (transition)			36.9%	8.7E-270
G	2161984	2161984	1	1		A -> G					306	SNP (transition)			29.4%	1.3E-191
A	2161994	2161994	1	1		G -> A					301	SNP (transition)			25.9%	2.6E-161
G	2200874	2200874	1	1		A -> G					242	SNP (transition)			30.6%	6.7E-189
G	2200877	2200877	1	1		C -> G					242	SNP (transversion)			47.9%	1.0E-323
T	2200890	2200890	1	1		C -> T					247	SNP (transition)			30.8%	1.3E-186
CA	2200891	2200892	2	1		GG -> CA					248	Substitution			51.6% -> 52.0%	0.0
T	2200926	2200926	1	1		C -> T					253	SNP (transition)			27.3%	1.9E-158
A	2200935	2200935	1	1		G -> A					221	SNP (transition)			31.2%	1.9E-149
	2201305	2201305	1	1		-C					143	Deletion			27.3%	7.5E-71
	2201310	2201310	1	1		-T					147	Deletion			42.9%	1.8E-78
C	2201388	2201388	1	1		T -> C					217	SNP (transition)			30.0%	5.6E-146
	2201454	2201454	1	1		-C					151	Deletion			26.5%	7.4E-22
T	2201455	2201455	1	1		A -> T					147	SNP (transversion)			33.3%	2.6E-69
	2201455	2201455	1	1		-A					147	Deletion			27.2%	2.5E-22
G	2201462	2201462	1	1		A -> G					143	SNP (transition)			38.5%	4.4E-109
C	2201466	2201466	1	1		T -> C					130	SNP (transition)			43.8%	1.9E-111
A	2201573	2201573	1	1		G -> A					183	SNP (transition)			25.7%	5.2E-65
C	2201607	2201607	1	1		T -> C					193	SNP (transition)			32.6%	3.5E-94
C	2201608	2201608	1	1		G -> C					190	SNP (transversion)			26.8%	1.7E-66
G	2201620	2201620	1	1		A -> G					220	SNP (transition)			28.6%	9.3E-84
T	2201633	2201633	1	1		C -> T					259	SNP (transition)			36.3%	1.4E-135
C	2201664	2201664	1	1		T -> C					277	SNP (transition)			32.9%	1.3E-153
G	2201668	2201668	1	1		T -> G					281	SNP (transversion)			74.0%	0.0
	2201676	2201676	1	1		(C)5 -> (C)4					280	Deletion (tandem repeat)			28.2%	3.1E-73
C	2201687	2201687	1	1		T -> C					288	SNP (transition)			26.0%	2.3E-155
T	2201705	2201705	1	1		C -> T					275	SNP (transition)			66.2%	0.0
T	2201710	2201710	1	1		C -> T					267	SNP (transition)			32.6%	2.8E-78
A	2201711	2201711	1	1		G -> A					265	SNP (transition)			27.5%	3.5E-175
C	2201716	2201716	1	1		T -> C					266	SNP (transition)			36.5%	1.1E-236
G	2201724	2201724	1	1		A -> G					263	SNP (transition)			63.5%	0.0
T	2214846	2214846	1	1		G -> T					189	SNP (transversion)			29.1%	6.0E-134
A	2214852	2214852	1	1		G -> A					188	SNP (transition)			61.7%	7.8E-319
A	2214861	2214861	1	1		T -> A					181	SNP (transversion)			31.5%	4.5E-141
A	2214901	2214901	1	1		G -> A					211	SNP (transition)			41.2%	6.9E-175
A	2214996	2214996	1	1		T -> A					142	SNP (transversion)			31.7%	4.9E-20
T	2215039	2215039	1	1		G -> T					173	SNP (transversion)			27.7%	2.3E-106
A	2215043	2215043	1	1		C -> A					170	SNP (transversion)			34.1%	4.6E-43
A	2215233	2215233	1	1		G -> A					217	SNP (transition)			49.8%	3.8E-153
A	2215239	2215239	1	1		G -> A					225	SNP (transition)			36.0%	1.3E-61
G	2215266	2215266	1	1		T -> G					238	SNP (transversion)			53.4%	3.0E-248
	2215277	2215277	1	1		(G)5 -> (G)4					235	Deletion (tandem repeat)			44.7%	2.9E-101
C	2215281	2215281	1	1		A -> C					231	SNP (transversion)			41.1%	7.6E-153
G	2215285	2215285	1	1		A -> G					230	SNP (transition)			26.1%	9.9E-113
C	2215309	2215309	1	1		T -> C					204	SNP (transition)			25.0%	4.1E-40
C	2215367	2215367	1	1		G -> C					246	SNP (transversion)			45.9%	1.6E-233
G	2215394	2215394	1	1		C -> G					189	SNP (transversion)			30.2%	1.1E-88
T	2215429	2215429	1	1		A -> T					136	SNP (transversion)			59.6%	3.1E-116
G	2215495	2215495	1	1		T -> G					29	SNP (transversion)			72.4%	1.5E-21
G	2215520	2215520	1	1		T -> G					72	SNP (transversion)			65.3%	2.2E-94
A	2215524	2215524	1	1		C -> A					74	SNP (transversion)			55.4%	2.6E-86
GG	2215728	2215729	2	1		AA -> GG					305 -> 306	Substitution			35.4% -> 35.6%	1.1E-80
A	2215754	2215754	1	1		G -> A					285	SNP (transition)			55.4%	9.5E-156
G	2215786	2215786	1	1		A -> G					231	SNP (transition)			39.0%	4.9E-55
C	2217756	2217756	1	1		T -> C					133	SNP (transition)			27.8%	1.7E-24
TG	2223572	2223573	2	1		AC -> TG					353 -> 360	Substitution			28.9% -> 29.5%	6.6E-216
T	2223590	2223590	1	1		A -> T					307	SNP (transversion)			27.7%	2.0E-195
G	2223591	2223591	1	1		A -> G					318	SNP (transition)			32.4%	9.9E-245
G	2223602	2223602	1	1		A -> G					386	SNP (transition)			25.1%	1.1E-198
C	2223852	2223852	1	1		T -> C					167	SNP (transition)			25.7%	1.1E-59
A	2224065	2224065	1	1		T -> A					250	SNP (transversion)			58.8%	2.2E-150
GG	2224084	2224084	1	1		A -> GG					242 -> 247	Insertion			90.7% -> 91.7%	0.0
G	2236519	2236519	1	1		A -> G					95	SNP (transition)			27.4%	1.6E-8
A	2236790	2236790	1	1		C -> A					26	SNP (transversion)			42.3%	1.6E-10
A	2236792	2236792	1	1		G -> A					26	SNP (transition)			26.9%	5.9E-7
C	2236818	2236818	1	1		G -> C					35	SNP (transversion)			65.7%	9.9E-20
C	2236820	2236820	1	1		T -> C					41	SNP (transition)			43.9%	2.1E-8
A	2236832	2236832	1	1		C -> A					72	SNP (transversion)			45.8%	6.5E-7
T	2236832	2236832	1	1		C -> T					72	SNP (transition)			34.7%	1.3E-8
TCT	2236834	2236836	3	1		GGG -> TCT					72 -> 73	Substitution			39.7% -> 40.3%	1.2E-16
A	2237077	2237077	1	1		G -> A					292	SNP (transition)			34.9%	8.1E-267
T	2237170	2237170	1	1		C -> T					465	SNP (transition)			26.2%	1.5E-288
	2237225	2237228	4	1		-CAAT					399 -> 401	Deletion			34.9% -> 35.1%	3.4E-212
C	2237263	2237263	1	1		A -> C					413	SNP (transversion)			38.0%	0.0
G	2237281	2237281	1	1		C -> G					362	SNP (transversion)			41.4%	0.0
A	2237331	2237331	1	1		G -> A					265	SNP (transition)			40.4%	4.2E-224
T	2237378	2237378	1	1		G -> T					138	SNP (transversion)			41.3%	6.5E-121
G	2237387	2237387	1	1		A -> G					121	SNP (transition)			26.4%	4.1E-61
CCT	2237389	2237391	3	1		GAC -> CCT					98 -> 107	Substitution			29.9% -> 32.7%	4.7E-64
A	2237400	2237400	1	1		C -> A					65	SNP (transversion)			30.8%	1.4E-20
G	2237401	2237401	1	1		C -> G					65	SNP (transversion)			26.2%	2.3E-16
A	2237463	2237463	1	1		C -> A					145	SNP (transversion)			34.5%	1.0E-61
T	2237476	2237476	1	1		G -> T					161	SNP (transversion)			28.0%	6.0E-51
A	2237478	2237478	1	1		C -> A					165	SNP (transversion)			27.3%	4.8E-46
T	2237492	2237492	1	1		G -> T					199	SNP (transversion)			31.7%	1.4E-74
G	2237494	2237494	1	1		T -> G					200	SNP (transversion)			29.0%	3.1E-66
G	2237508	2237508	1	1		A -> G					235	SNP (transition)			32.8%	1.1E-99
G	2237591	2237591	1	1		A -> G					363	SNP (transition)			44.4%	1.4E-264
A	2237602	2237602	1	1		C -> A					394	SNP (transversion)			50.8%	4.9E-324
A	2237621	2237621	1	1		G -> A					421	SNP (transition)			50.4%	2.6E-300
G	2237632	2237632	1	1		A -> G					433	SNP (transition)			46.0%	7.5E-311
T	2237635	2237635	1	1		C -> T					438	SNP (transition)			25.1%	9.0E-138
C	2237663	2237663	1	1		T -> C					438	SNP (transition)			37.4%	1.1E-221
G	2237739	2237739	1	1		A -> G					244	SNP (transition)			43.0%	3.2E-213
G	2237905	2237905	1	1		A -> G					91	SNP (transition)			27.5%	3.2E-19
G	2312591	2312591	1	1		C -> G					339	SNP (transversion)			32.4%	2.1E-228
T	2312613	2312613	1	1		G -> T					397	SNP (transversion)			46.6%	0.0
G	2312632	2312632	1	1		A -> G					413	SNP (transition)			45.3%	0.0
T	2312658	2312658	1	1		A -> T					394	SNP (transversion)			56.9%	0.0
T	2312663	2312663	1	1		G -> T					389	SNP (transversion)			63.0%	0.0
TT	2312672	2312673	2	1		CC -> TT					389 -> 390	Substitution			36.4% -> 36.5%	5.7E-303
A	2312678	2312678	1	1		G -> A					384	SNP (transition)			35.7%	7.1E-291
T	2312736	2312736	1	1		G -> T					352	SNP (transversion)			51.4%	0.0
G	2312761	2312761	1	1		T -> G					218	SNP (transversion)			47.2%	3.8E-266
G	2312773	2312773	1	1		A -> G					206	SNP (transition)			51.5%	3.1E-279
A	2312779	2312779	1	1		T -> A					201	SNP (transversion)			32.8%	6.3E-158
T	2312782	2312782	1	1		C -> T					197	SNP (transition)			33.0%	2.9E-136
	2312787	2312791	5	1		-ATGGC					199 -> 204	Deletion			33.3% -> 34.2%	1.7E-122
C	2312804	2312804	1	1		T -> C					202	SNP (transition)			34.2%	3.0E-180
T	2312852	2312852	1	1		C -> T					199	SNP (transition)			29.6%	3.1E-138
T	2312857	2312857	1	1		G -> T					197	SNP (transversion)			28.9%	6.7E-133
G	2313323	2313323	1	1		T -> G					249	SNP (transversion)			25.3%	2.5E-117
C	2496475	2496475	1	1		T -> C					233	SNP (transition)			54.1%	0.0
A	2496483	2496483	1	1		G -> A					246	SNP (transition)			40.2%	1.6E-276
T	2496485	2496485	1	1		C -> T					246	SNP (transition)			58.9%	0.0
A	2496489	2496489	1	1		G -> A					259	SNP (transition)			35.5%	2.8E-223
T	2496504	2496504	1	1		C -> T					290	SNP (transition)			29.0%	1.4E-111
A	2496512	2496512	1	1		G -> A					299	SNP (transition)			38.8%	5.0E-171
T	2496866	2496866	1	1		C -> T					164	SNP (transition)			30.5%	1.7E-63
A	2513077	2513077	1	1		G -> A					417	SNP (transition)			29.0%	6.2E-208
G	2513461	2513461	1	1		T -> G					199	SNP (transversion)			25.6%	2.5E-60
T	2513463	2513463	1	1		C -> T					201	SNP (transition)			25.4%	4.4E-60
GA	2513469	2513470	2	1		TC -> GA					204	Substitution			26.0% -> 26.5%	1.2E-64
T	2513501	2513501	1	1		C -> T					200	SNP (transition)			33.5%	3.3E-55
G	2513534	2513534	1	1		T -> G					210	SNP (transversion)			32.4%	1.8E-48
C	2513788	2513788	1	1		G -> C					227	SNP (transversion)			33.5%	8.9E-175
G	2513792	2513792	1	1		A -> G					230	SNP (transition)			29.6%	2.2E-145
G	2596983	2596983	1	1		A -> G					328	SNP (transition)			26.5%	4.3E-198
A	2596988	2596988	1	1		T -> A					339	SNP (transversion)			25.7%	5.7E-188
T	2596992	2596992	1	1		C -> T					337	SNP (transition)			26.4%	1.6E-193
C	2596994	2596994	1	1		T -> C					338	SNP (transition)			26.0%	1.6E-199
C	2597009	2597009	1	1		T -> C					337	SNP (transition)			34.4%	2.3E-244
A	2597051	2597051	1	1		T -> A					350	SNP (transversion)			31.1%	3.8E-213
AC	2597056	2597057	2	1		GT -> AC					352	Substitution			32.7%	1.2E-227
A	2608345	2608345	1	1		G -> A					467	SNP (transition)			25.1%	6.2E-101
T	2608349	2608349	1	1		G -> T					470	SNP (transversion)			27.4%	1.0E-116
C	2608422	2608422	1	1		T -> C					432	SNP (transition)			26.6%	5.8E-136
G	2608431	2608431	1	1		A -> G					407	SNP (transition)			28.5%	4.8E-141
C	2608474	2608474	1	1		T -> C					256	SNP (transition)			39.8%	6.2E-132
T	2608475	2608475	1	1		A -> T					254	SNP (transversion)			77.6%	1.7E-239
A	2608493	2608493	1	1		T -> A					210	SNP (transversion)			45.7%	2.7E-103
G	2608529	2608529	1	1		T -> G					157	SNP (transversion)			30.6%	1.5E-16
C	2635729	2635729	1	1		A -> C					201	SNP (transversion)			33.8%	4.7E-96
T	2635734	2635734	1	1		C -> T					200	SNP (transition)			37.0%	7.3E-108
C	2635794	2635794	1	1		A -> C					175	SNP (transversion)			32.0%	1.1E-29
G	2635822	2635822	1	1		C -> G					164	SNP (transversion)			25.6%	3.0E-22
C	2635965	2635965	1	1		T -> C					200	SNP (transition)			31.0%	1.0E-60
C	2636006	2636006	1	1		T -> C					183	SNP (transition)			28.4%	4.0E-64
T	2636063	2636063	1	1		A -> T					168	SNP (transversion)			26.2%	2.2E-61
C	2636070	2636070	1	1		G -> C					172	SNP (transversion)			26.7%	1.1E-73
C	2636078	2636078	1	1		T -> C					171	SNP (transition)			26.3%	2.7E-67
C	2636086	2636086	1	1		T -> C					178	SNP (transition)			28.7%	3.9E-63
T	2636134	2636134	1	1		C -> T					232	SNP (transition)			27.2%	1.2E-28
TCG	2636166	2636166	1	1		A -> TCG					231	Insertion			31.2%	7.9E-37
C	2636213	2636213	1	1		T -> C					186	SNP (transition)			39.2%	6.2E-26
A	2636230	2636230	1	1		G -> A					191	SNP (transition)			33.5%	9.5E-19
C	2848166	2848166	1	1		T -> C					251	SNP (transition)			31.5%	1.5E-147
C	2848227	2848227	1	1		T -> C					425	SNP (transition)			40.7%	0.0
C	2848258	2848258	1	1		A -> C					452	SNP (transversion)			54.6%	0.0
G	2848265	2848265	1	1		A -> G					453	SNP (transition)			53.6%	0.0
G	2848357	2848357	1	1		A -> G					329	SNP (transition)			36.8%	2.4E-295
G	2848380	2848380	1	1		T -> G					252	SNP (transversion)			31.0%	6.3E-184
C	2892626	2892626	1	1		G -> C					461	SNP (transversion)			46.4%	0.0
T	2906784	2906784	1	1		G -> T					401	SNP (transversion)			32.7%	5.9E-194
G	2906881	2906881	1	1		T -> G					74	SNP (transversion)			52.7%	5.7E-81
C	2906974	2906974	1	1		A -> C					192	SNP (transversion)			42.2%	5.4E-76

(v.1.17.2)

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