P. umsongensis GO16 ttdR KO ALE_Butyrate Whole-Genome Sequencing raw data

Selected Cell

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Value:

Sheet1

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A	4533781	4533780	0	1	(A)4 -> (A)5	405	Insertion (tandem repeat)	99.8%	0.0
G	4533949	4533948	0	1	(G)2 -> (G)3	464	Insertion (tandem repeat)	98.7%	0.0
G	4534209	4534208	0	1	(G)3 -> (G)4	412	Insertion (tandem repeat)	100.0%	1.6E-165
T	4536064	4536064	1	1	C -> T	5	SNP (transition)	100.0%	1.0E-10
T	4536069	4536069	1	1	C -> T	15	SNP (transition)	26.7%	3.3E-7
C	4536596	4536595	0	1	(C)5 -> (C)6	380	Insertion (tandem repeat)	99.7%	3.8E-112
C	4536871	4536870	0	1	(C)4 -> (C)5	410	Insertion (tandem repeat)	99.8%	4.1E-121
A	4537165	4537164	0	1	(A)3 -> (A)4	449	Insertion (tandem repeat)	95.3%	1.4E-266
G	4537170	4537169	0	1	+G	448	Insertion	96.7%	1.0E-277
CTT	4537305	4537304	0	1	+CTT	453 -> 454	Insertion	92.3%	0.0
G	4537315	4537315	1	1	T -> G	443	SNP (transversion)	95.5%	0.0
TGCG	4537317	4537317	1	1	C -> TGCG	429 -> 437	Insertion	94.2% -> 94.3%	0.0
T	4537322	4537321	0	1	+T	417	Insertion	96.9%	0.0
AC	4537754	4537753	0	1	+AC	328 -> 332	Insertion	99.4%	2.1E-94
T	4539051	4539050	0	1	+T	716	Insertion	99.9%	4.3E-284
A	4539320	4539320	1	1	G -> A	509	SNP (transition)	97.2%	0.0
C	4539343	4539343	1	1	T -> C	494	SNP (transition)	99.8%	0.0
C	4539396	4539396	1	1	T -> C	502	SNP (transition)	94.8%	0.0
G	4539412	4539412	1	1	T -> G	499	SNP (transversion)	98.8%	0.0
	4539417	4539417	1	1	-C	499	Deletion	100.0%	0.0
G	4539420	4539420	1	1	A -> G	502	SNP (transition)	93.6%	0.0
G	4561110	4561110	1	1	T -> G	501	SNP (transversion)	29.3%	0.0
A	4561116	4561116	1	1	G -> A	510	SNP (transition)	31.2%	0.0
T	4561133	4561133	1	1	G -> T	554	SNP (transversion)	58.3%	0.0
A	4561135	4561135	1	1	G -> A	562	SNP (transition)	56.9%	0.0
G	4889971	4889971	1	1	A -> G	242	SNP (transition)	27.3%	2.1E-171
T	4889977	4889977	1	1	C -> T	250	SNP (transition)	27.2%	4.4E-156
C	4889982	4889982	1	1	T -> C	254	SNP (transition)	29.1%	4.6E-187
G	4890004	4890004	1	1	T -> G	260	SNP (transversion)	36.5%	6.4E-251
G	4890100	4890100	1	1	T -> G	313	SNP (transversion)	50.5%	0.0
G	4890105	4890105	1	1	A -> G	308	SNP (transition)	48.7%	0.0
T	4993674	4993674	1	1	G -> T	69	SNP (transversion)	36.2%	7.7E-30
C	4993856	4993856	1	1	G -> C	408	SNP (transversion)	25.2%	1.2E-231
A	5002842	5002842	1	1	G -> A	437	SNP (transition)	48.7%	0.0
C	5002845	5002845	1	1	T -> C	409	SNP (transition)	54.5%	0.0
C	5002847	5002847	1	1	T -> C	429	SNP (transition)	40.6%	0.0
AA	5002933	5002933	1	1	T -> AA	619 -> 624	Insertion	48.5% -> 48.9%	0.0
TT	5062807	5062808	2	1	GG -> TT	72 -> 73	Substitution	100.0%	1.6E-245
AAATGCGA	5062811	5062818	8	1	TCGCATTT -> AAATGCGA	71 -> 79	Substitution	100.0%	3.2E-256
G	5170874	5170874	1	1	C -> G	146	SNP (transversion)	34.2%	3.7E-121
	5170879	5170879	1	1	(C)6 -> (C)5	154	Deletion (tandem repeat)	31.8%	1.9E-92
AA	5279175	5279176	2	1	GT -> AA	3 -> 7	Substitution	66.7% -> 85.7%	1.2E-7
CTC	5279179	5279181	3	1	TCG -> CTC	11 -> 13	Substitution	90.9% -> 92.3%	1.1E-36
CCAC	5279183	5279186	4	1	TGCG -> CCAC	18 -> 21	Substitution	94.4% -> 95.2%	1.1E-60
CC	5279188	5279189	2	1	GG -> CC	26 -> 27	Substitution	96.2% -> 96.3%	8.2E-92
T	5279191	5279191	1	1	G -> T	31	SNP (transversion)	96.8%	3.1E-107
TCTAATCCC	5279193	5279201	9	1	GTCGGCGAA -> TCTAATCCC	34 -> 60	Substitution	94.1% -> 98.3%	5.4E-118
T	5279204	5279204	1	1	G -> T	72	SNP (transversion)	100.0%	6.3E-260
C	5279206	5279206	1	1	G -> C	77	SNP (transversion)	100.0%	6.3E-278
GAGTTCT	5279209	5279215	7	1	TGCAAAC -> GAGTTCT	78 -> 97	Substitution	98.7% -> 99.0%	1.6E-281
GA	5279217	5279218	2	1	TT -> GA	104 -> 105	Substitution	100.0%	0.0
GC	5279220	5279221	2	1	CT -> GC	107	Substitution	100.0%	0.0
C	5363445	5363445	1	1	G -> C	435	SNP (transversion)	25.3%	3.8E-138
A	5363990	5363990	1	1	G -> A	106	SNP (transition)	33.0%	4.0E-95
T	5363992	5363992	1	1	G -> T	98	SNP (transversion)	38.8%	2.1E-106
T	5364012	5364012	1	1	G -> T	101	SNP (transversion)	72.3%	8.6E-217
GT	5483354	5483355	2	1	TG -> GT	553 -> 556	Substitution	99.3%	1.5E-323
CCA	5483357	5483356	0	1	+CCA	552 -> 554	Insertion	99.6%	0.0
	5483453	5483453	1	1	(A)3 -> (A)2	393	Deletion (tandem repeat)	100.0%	1.3E-118
C	5483641	5483640	0	1	+C	456	Insertion	100.0%	1.6E-137
G	5483645	5483644	0	1	(G)3 -> (G)4	448	Insertion (tandem repeat)	100.0%	4.0E-135
G	5483756	5483755	0	1	+G	411	Insertion	99.5%	4.2E-119
T	5485471	5485470	0	1	(T)3 -> (T)4	431	Insertion (tandem repeat)	100.0%	4.0E-173
T	5485650	5485649	0	1	+T	323	Insertion	99.7%	4.1E-95
C	5486035	5486034	0	1	(C)5 -> (C)6	379	Insertion (tandem repeat)	100.0%	2.0E-114
C	5486405	5486404	0	1	+C	500	Insertion	99.4%	7.2E-193
A	5486498	5486497	0	1	+A	685	Insertion	99.6%	1.8E-266
T	5486619	5486619	1	1	A -> T	481	SNP (transversion)	94.4%	6.9E-322
T	5486666	5486665	0	1	(T)2 -> (T)3	389	Insertion (tandem repeat)	98.7%	0.0
C	5486719	5486718	0	1	+C	392	Insertion	99.7%	0.0
CA	5486741	5486742	2	1	TC -> CA	412 -> 418	Substitution	99.3%	0.0
	5486744	5486745	2	1	(CT)3 -> (CT)2	406	Deletion (tandem repeat)	100.0%	0.0
	5486747	5486753	7	1	-GTCGCAC	407	Deletion	100.0%	0.0
T	5486855	5486855	1	1	A -> T	729	SNP (transversion)	31.0%	1.4E-91
T	5486857	5486856	0	1	+T	730	Insertion	26.0%	2.0E-79
C	5487003	5487002	0	1	+C	689	Insertion	99.9%	2.6E-273
C	5487196	5487195	0	1	+C	452	Insertion	99.8%	1.1E-133
G	5487250	5487249	0	1	(G)2 -> (G)3	463	Insertion (tandem repeat)	99.8%	5.8E-137
G	5487339	5487338	0	1	+G	391	Insertion	100.0%	5.0E-118
A	5488677	5488677	1	1	G -> A	680	SNP (transition)	41.2%	1.0E-227
C	5488691	5488691	1	1	T -> C	649	SNP (transition)	44.8%	6.6E-278
A	5488699	5488699	1	1	G -> A	640	SNP (transition)	48.1%	0.0
A	5488702	5488702	1	1	T -> A	641	SNP (transversion)	48.5%	0.0
A	5545448	5545448	1	1	T -> A	321	SNP (transversion)	25.2%	1.3E-190
A	5545451	5545451	1	1	T -> A	335	SNP (transversion)	28.1%	1.5E-216
A	5880744	5880744	1	1	T -> A	648	SNP (transversion)	97.2%	0.0
T	5883934	5883934	1	1	A -> T	232	SNP (transversion)	29.7%	8.2E-8
TGTT	6013607	6013610	4	1	GAAA -> TGTT	398 -> 401	Substitution	24.7% -> 26.3%	1.3E-260
TAA	6013613	6013615	3	1	CGT -> TAA	400 -> 403	Substitution	27.0% -> 28.5%	6.4E-280
CT	6013620	6013621	2	1	TG -> CT	411 -> 413	Substitution	30.4% -> 31.2%	0.0
C	6013625	6013625	1	1	A -> C	422	SNP (transversion)	35.5%	0.0
TAA	6013628	6013630	3	1	ATG -> TAA	433 -> 438	Substitution	37.0% -> 38.8%	0.0
T	6013638	6013638	1	1	C -> T	448	SNP (transition)	44.9%	0.0
TT	6013678	6013679	2	1	GG -> TT	468 -> 471	Substitution	27.1% -> 27.8%	4.0E-318
TT	6013681	6013682	2	1	GC -> TT	462 -> 465	Substitution	25.8% -> 26.9%	4.3E-286
A	6013684	6013684	1	1	T -> A	464	SNP (transversion)	25.0%	8.0E-295
T	6319454	6319453	0	1	+T	294	Insertion	99.7%	0.0
TG	6998205	6998205	1	1	C -> TG	387 -> 389	Insertion	26.2% -> 26.4%	1.0E-251
A	6998219	6998219	1	1	G -> A	444	SNP (transition)	27.3%	1.1E-312
AA	6998229	6998230	2	1	TG -> AA	490 -> 496	Substitution	42.9% -> 43.1%	0.0
C	6998232	6998232	1	1	A -> C	503	SNP (transversion)	43.1%	0.0
C	6998234	6998234	1	1	T -> C	508	SNP (transition)	43.3%	0.0
A	6998236	6998236	1	1	G -> A	528	SNP (transition)	44.3%	0.0
T	6998328	6998328	1	1	G -> T	625	SNP (transversion)	31.4%	0.0
C	6998330	6998329	0	1	+C	608	Insertion	28.9%	0.0
CG	6998334	6998335	2	1	GC -> CG	596 -> 597	Substitution	29.4% -> 29.8%	0.0
G	6998337	6998337	1	1	A -> G	589	SNP (transition)	29.4%	0.0
T	7269432	7269432	1	1	C -> T	484	SNP (transition)	100.0%	0.0