P. umsongensis GO16 ttdR KO ALE_Octanoate Whole-Genome Sequencing raw data

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CTTCC	3163902	3163906	5	1		TGAAA -> CTTCC					22 -> 24	Substitution			25.0% -> 29.2%	3.0E-16
T	3163910	3163910	1	1		G -> T					25	SNP (transversion)			52.0%	5.1E-33
C	3163913	3163913	1	1		G -> C					28	SNP (transversion)			42.9%	4.8E-34
C	3163918	3163918	1	1		T -> C					30	SNP (transition)			33.3%	2.8E-17
GG	3163923	3163924	2	1		AA -> GG					34	Substitution			29.4%	1.2E-16
G	3224984	3224984	1	1		T -> G					82	SNP (transversion)			28.0%	9.2E-12
C	3303928	3303928	1	1		G -> C					46	SNP (transversion)			34.8%	9.6E-37
C	3303931	3303931	1	1		G -> C					57	SNP (transversion)			47.4%	6.8E-63
T	3311275	3311274	0	1		(T)3 -> (T)4					83	Insertion (tandem repeat)			72.3%	7.3E-65
T	3311298	3311298	1	1		G -> T					65	SNP (transversion)			90.8%	2.2E-81
A	3311934	3311934	1	1		C -> A					135	SNP (transversion)			27.4%	3.8E-82
A	3311937	3311937	1	1		G -> A					140	SNP (transition)			25.7%	3.2E-75
C	3311970	3311970	1	1		A -> C					143	SNP (transversion)			43.4%	5.1E-164
C	3311984	3311984	1	1		T -> C					151	SNP (transition)			25.2%	7.1E-98
T	3311987	3311987	1	1		C -> T					156	SNP (transition)			44.9%	2.5E-193
T	3312001	3312001	1	1		A -> T					153	SNP (transversion)			47.7%	1.5E-189
A	3312017	3312017	1	1		G -> A					149	SNP (transition)			36.2%	3.9E-143
	3312027	3312027	1	1		-G					146	Deletion			41.8%	2.3E-105
A	3312039	3312039	1	1		C -> A					141	SNP (transversion)			36.2%	4.9E-125
A	3312044	3312044	1	1		G -> A					144	SNP (transition)			36.1%	7.8E-112
C	3312049	3312049	1	1		T -> C					146	SNP (transition)			37.0%	1.5E-127
C	3312089	3312089	1	1		T -> C					148	SNP (transition)			29.1%	2.4E-109
C	3312091	3312091	1	1		T -> C					149	SNP (transition)			27.5%	5.1E-95
A	3350700	3350700	1	1		G -> A					19	SNP (transition)			84.2%	1.5E-34
A	3350740	3350740	1	1		T -> A					23	SNP (transversion)			91.3%	3.7E-11
A	3350874	3350874	1	1		G -> A					90	SNP (transition)			47.8%	6.9E-91
T	3351026	3351026	1	1		A -> T					210	SNP (transversion)			42.4%	7.4E-101
G	3351046	3351046	1	1		T -> G					200	SNP (transversion)			33.5%	3.9E-81
C	3351067	3351067	1	1		G -> C					197	SNP (transversion)			34.5%	3.1E-110
C	3351077	3351077	1	1		T -> C					185	SNP (transition)			33.0%	1.6E-79
A	3351080	3351080	1	1		C -> A					187	SNP (transversion)			43.3%	7.4E-117
G	3351127	3351127	1	1		A -> G					157	SNP (transition)			29.9%	4.1E-41
G	3351211	3351211	1	1		T -> G					71	SNP (transversion)			38.0%	1.6E-27
C	3351215	3351215	1	1		T -> C					71	SNP (transition)			39.4%	2.5E-26
G	3431479	3431479	1	1		A -> G					55	SNP (transition)			29.1%	1.5E-22
A	3431526	3431526	1	1		G -> A					31	SNP (transition)			25.8%	1.2E-18
T	3431620	3431620	1	1		A -> T					47	SNP (transversion)			42.6%	8.8E-36
T	3431660	3431660	1	1		C -> T					81	SNP (transition)			60.5%	5.6E-135
T	3431667	3431667	1	1		C -> T					84	SNP (transition)			33.3%	5.9E-71
T	3431786	3431786	1	1		C -> T					189	SNP (transition)			57.7%	4.6E-273
A	3431826	3431826	1	1		G -> A					201	SNP (transition)			55.2%	8.3E-253
G	3431832	3431832	1	1		A -> G					202	SNP (transition)			28.7%	1.6E-94
G	3431859	3431859	1	1		T -> G					184	SNP (transversion)			26.6%	1.4E-68
	3431886	3431886	1	1		(C)4 -> (C)3					155	Deletion (tandem repeat)			32.3%	2.2E-31
G	3431976	3431976	1	1		A -> G					68	SNP (transition)			41.2%	8.8E-52
T	3432011	3432011	1	1		C -> T					63	SNP (transition)			38.1%	5.7E-46
T	3432023	3432023	1	1		G -> T					50	SNP (transversion)			64.0%	1.1E-70
A	3432041	3432041	1	1		T -> A					51	SNP (transversion)			72.5%	7.9E-85
AG	3451490	3451491	2	1		GA -> AG					146	Substitution			28.8%	3.0E-98
C	3451493	3451493	1	1		T -> C					148	SNP (transition)			31.1%	1.1E-104
G	3451518	3451518	1	1		C -> G					142	SNP (transversion)			48.6%	6.8E-187
T	3452807	3452807	1	1		A -> T					145	SNP (transversion)			35.2%	4.4E-114
A	3452814	3452814	1	1		G -> A					139	SNP (transition)			43.9%	2.9E-125
G	3452816	3452816	1	1		T -> G					136	SNP (transversion)			38.2%	8.1E-124
C	3452818	3452818	1	1		A -> C					135	SNP (transversion)			38.5%	7.8E-119
A	3452830	3452830	1	1		G -> A					138	SNP (transition)			37.7%	1.3E-128
G	3452832	3452832	1	1		A -> G					140	SNP (transition)			40.0%	3.4E-140
G	3452841	3452841	1	1		A -> G					149	SNP (transition)			50.3%	4.3E-182
A	3680841	3680841	1	1		G -> A					123	SNP (transition)			26.8%	4.2E-50
A	3680859	3680859	1	1		G -> A					76	SNP (transition)			32.9%	2.2E-48
G	3729214	3729214	1	1		C -> G					58	SNP (transversion)			53.4%	5.2E-99
A	3729217	3729217	1	1		C -> A					56	SNP (transversion)			51.8%	2.9E-89
GGAG	3729221	3729224	4	1		TTTC -> GGAG					52 -> 54	Substitution			43.4% -> 48.1%	9.8E-69
G	3729227	3729227	1	1		A -> G					47	SNP (transition)			36.2%	4.3E-46
C	3729229	3729229	1	1		G -> C					44	SNP (transversion)			31.8%	4.5E-40
GT	3729231	3729232	2	1		CA -> GT					43 -> 44	Substitution			29.5% -> 30.2%	8.2E-37
GG	3729234	3729235	2	1		AA -> GG					39	Substitution			28.2%	6.6E-29
CG	3729238	3729239	2	1		GA -> CG					36 -> 38	Substitution			25.0% -> 26.3%	4.7E-26
T	3729245	3729245	1	1		A -> T					30	SNP (transversion)			26.7%	9.1E-19
T	3729253	3729252	0	1		(T)3 -> (T)4					27	Insertion (tandem repeat)			29.6%	3.5E-19
T	3729294	3729294	1	1		A -> T					22	SNP (transversion)			45.5%	6.2E-19
G	3729662	3729662	1	1		C -> G					10	SNP (transversion)			60.0%	4.8E-8
T	3729665	3729665	1	1		G -> T					15	SNP (transversion)			73.3%	1.1E-20
G	3729667	3729667	1	1		C -> G					15	SNP (transversion)			80.0%	2.8E-23
C	3729670	3729670	1	1		A -> C					16	SNP (transversion)			93.8%	5.0E-31
T	3729672	3729672	1	1		C -> T					17	SNP (transition)			94.1%	1.1E-34
A	3729679	3729679	1	1		G -> A					18	SNP (transition)			94.4%	1.4E-38
T	3729681	3729680	0	1		+T					18	Insertion			94.4%	1.4E-38
C	3730106	3730106	1	1		A -> C					42	SNP (transversion)			95.2%	7.6E-46
C	3783803	3783803	1	1		T -> C					64	SNP (transition)			26.6%	4.3E-45
CG	3783815	3783816	2	1		TA -> CG					69 -> 70	Substitution			34.3% -> 34.8%	8.7E-64
C	3783820	3783819	0	1		(C)3 -> (C)4					67	Insertion (tandem repeat)			32.8%	2.7E-60
A	3783829	3783829	1	1		G -> A					74	SNP (transition)			44.6%	2.2E-75
G	3783847	3783847	1	1		T -> G					82	SNP (transversion)			57.3%	8.5E-114
C	3783849	3783849	1	1		A -> C					86	SNP (transversion)			55.8%	1.4E-110
C	3783862	3783862	1	1		T -> C					92	SNP (transition)			56.5%	4.5E-120
G	3783866	3783866	1	1		C -> G					91	SNP (transversion)			59.3%	2.5E-126
A	3783868	3783868	1	1		G -> A					91	SNP (transition)			59.3%	6.3E-121
A	3783870	3783870	1	1		T -> A					93	SNP (transversion)			60.2%	2.7E-120
T	3783881	3783880	0	1		+T					95	Insertion			57.9%	2.8E-111
T	3783914	3783914	1	1		C -> T					77	SNP (transition)			59.7%	7.5E-99
CAT	3783932	3783934	3	1		ATG -> CAT					63 -> 66	Substitution			47.6% -> 48.5%	3.2E-57
T	3783941	3783941	1	1		G -> T					67	SNP (transversion)			38.8%	5.0E-37
G	3783943	3783943	1	1		A -> G					67	SNP (transition)			41.8%	1.9E-46
C	3783948	3783948	1	1		A -> C					66	SNP (transversion)			40.9%	1.6E-44
T	3783950	3783950	1	1		C -> T					66	SNP (transition)			40.9%	1.6E-44
A	3783952	3783952	1	1		T -> A					67	SNP (transversion)			41.8%	1.2E-43
T	3783962	3783962	1	1		A -> T					62	SNP (transversion)			32.3%	7.1E-29
C	3783964	3783964	1	1		T -> C					63	SNP (transition)			31.7%	1.0E-28
C	3783972	3783972	1	1		G -> C					63	SNP (transversion)			25.4%	6.5E-20
T	3791995	3791995	1	1		G -> T					142	SNP (transversion)			26.1%	8.0E-74
T	3792041	3792041	1	1		G -> T					154	SNP (transversion)			31.8%	1.1E-82
A	3792072	3792072	1	1		G -> A					165	SNP (transition)			34.5%	2.1E-115
CG	3959001	3959002	2	1		TC -> CG					291 -> 305	Substitution			39.9% -> 42.3%	2.5E-291
G	3959009	3959009	1	1		A -> G					351	SNP (transition)			49.9%	0.0
C	3959016	3959016	1	1		G -> C					397	SNP (transversion)			56.9%	0.0
A	3959023	3959023	1	1		G -> A					425	SNP (transition)			46.8%	0.0
C	3959025	3959025	1	1		T -> C					437	SNP (transition)			62.5%	0.0
A	3959093	3959093	1	1		G -> A					367	SNP (transition)			45.2%	0.0
CCA	3959096	3959098	3	1		TTT -> CCA					324 -> 338	Substitution			57.4% -> 58.9%	0.0
TCA	3959103	3959105	3	1		CTT -> TCA					270 -> 289	Substitution			50.4% -> 54.0%	0.0
G	3959107	3959107	1	1		A -> G					244	SNP (transition)			46.7%	1.2E-293
C	3959109	3959109	1	1		G -> C					229	SNP (transversion)			43.7%	6.7E-254
C	3959112	3959112	1	1		T -> C					210	SNP (transition)			39.5%	2.1E-206
CG	3959115	3959116	2	1		AT -> CG					196 -> 202	Substitution			35.2% -> 36.6%	1.4E-167
C	3959122	3959122	1	1		T -> C					178	SNP (transition)			29.8%	1.8E-124
G	3972425	3972425	1	1		T -> G					312	SNP (transversion)			26.3%	1.3E-194
C	4097444	4097443	0	1		+C					133	Insertion			99.2%	0.0
C	4097480	4097480	1	1		A -> C					93	SNP (transversion)			100.0%	0.0
CC	4097482	4097481	0	1		+CC					90	Insertion			98.9%	2.8E-310
	4097486	4097486	1	1		-A					86	Deletion			100.0%	4.0E-250
C	4097490	4097490	1	1		G -> C					79	SNP (transversion)			100.0%	4.0E-285
TCTACCA	4097492	4097498	7	1		CGAGTGG -> TCTACCA					67 -> 77	Substitution			98.5% -> 98.7%	1.6E-228
CT	4097500	4097501	2	1		GG -> CT					62 -> 64	Substitution			100.0%	2.5E-205
A	4097688	4097688	1	1		T -> A					49	SNP (transversion)			79.6%	3.3E-131
T	4097691	4097691	1	1		A -> T					52	SNP (transversion)			80.8%	1.0E-141
G	4097693	4097693	1	1		A -> G					56	SNP (transition)			82.1%	1.4E-146
TCG	4097695	4097697	3	1		ATC -> TCG					56 -> 58	Substitution			82.8% -> 86.0%	2.2E-164
CTT	4097700	4097702	3	1		AGC -> CTT					72 -> 75	Substitution			81.3% -> 84.7%	1.8E-199
C	4097705	4097705	1	1		G -> C					76	SNP (transversion)			80.3%	8.9E-199
AGCCTG	4097711	4097710	0	1		+AGCCTG					82	Insertion			73.2%	9.1E-183
A	4178498	4178498	1	1		G -> A					176	SNP (transition)			27.8%	7.3E-99
C	4178501	4178501	1	1		G -> C					178	SNP (transversion)			31.5%	1.2E-110
A	4178540	4178540	1	1		T -> A					179	SNP (transversion)			49.2%	1.7E-238
T	4178548	4178548	1	1		G -> T					168	SNP (transversion)			32.1%	1.0E-139
C	4178549	4178548	0	1		+C					167	Insertion			25.7%	2.5E-115
C	4178829	4178829	1	1		T -> C					97	SNP (transition)			26.8%	8.5E-40
G	4178832	4178832	1	1		T -> G					96	SNP (transversion)			26.0%	1.7E-35
C	4179203	4179203	1	1		G -> C					178	SNP (transversion)			39.3%	3.8E-195
	4179206	4179206	1	1		(A)3 -> (A)2					181	Deletion (tandem repeat)			35.4%	2.2E-117
A	4179212	4179212	1	1		T -> A					186	SNP (transversion)			50.0%	1.8E-271
C	4179251	4179251	1	1		G -> C					206	SNP (transversion)			29.6%	4.1E-161
C	4179254	4179254	1	1		T -> C					209	SNP (transition)			31.1%	1.0E-166
T	4197429	4197429	1	1		C -> T					96	SNP (transition)			35.4%	1.2E-49
G	4197456	4197456	1	1		C -> G					135	SNP (transversion)			43.7%	1.9E-103
C	4197465	4197465	1	1		A -> C					141	SNP (transversion)			48.2%	8.1E-123
A	4197470	4197470	1	1		G -> A					139	SNP (transition)			48.9%	2.2E-123
CC	4197472	4197473	2	1		AG -> CC					140 -> 142	Substitution			47.9% -> 48.6%	2.6E-129
T	4197477	4197477	1	1		C -> T					141	SNP (transition)			47.5%	1.9E-120
A	4197478	4197478	1	1		C -> A					142	SNP (transversion)			31.7%	4.6E-67
A	4197491	4197491	1	1		G -> A					145	SNP (transition)			32.4%	1.6E-70
A	4197492	4197492	1	1		T -> A					147	SNP (transversion)			46.9%	8.7E-110
A	4197493	4197493	1	1		C -> A					148	SNP (transversion)			33.1%	7.7E-79
A	4197536	4197536	1	1		G -> A					115	SNP (transition)			28.7%	9.2E-58
G	4211564	4211564	1	1		A -> G					191	SNP (transition)			44.5%	5.5E-234
T	4211567	4211567	1	1		A -> T					184	SNP (transversion)			34.8%	6.3E-168
TTGT	4211569	4211572	4	1		CGCG -> TTGT					183 -> 187	Substitution			30.5% -> 32.2%	2.6E-158
T	4211574	4211574	1	1		G -> T					187	SNP (transversion)			30.5%	1.7E-151
G	4211575	4211575	1	1		T -> G					193	SNP (transversion)			25.9%	5.6E-129
G	4211578	4211578	1	1		A -> G					196	SNP (transition)			25.0%	1.9E-130
T	4211590	4211590	1	1		C -> T					203	SNP (transition)			43.8%	4.7E-253
A	4211602	4211602	1	1		C -> A					194	SNP (transversion)			51.0%	7.5E-221
T	4211687	4211687	1	1		C -> T					136	SNP (transition)			29.4%	4.4E-102
T	4211701	4211701	1	1		G -> T					173	SNP (transversion)			30.6%	2.2E-109
G	4211703	4211702	0	1		+G					184	Insertion			35.3%	1.4E-164
T	4211703	4211702	0	1		(T)3 -> (T)4					184	Insertion (tandem repeat)			27.2%	3.4E-115
G	4211724	4211724	1	1		T -> G					246	SNP (transversion)			33.3%	8.1E-213
T	4211757	4211757	1	1		C -> T					333	SNP (transition)			31.8%	2.9E-240
T	4211758	4211758	1	1		C -> T					339	SNP (transition)			34.8%	3.7E-308
A	4211793	4211793	1	1		C -> A					366	SNP (transversion)			37.2%	0.0
C	4211798	4211798	1	1		T -> C					364	SNP (transition)			55.2%	0.0
G	4211802	4211802	1	1		C -> G					364	SNP (transversion)			37.6%	0.0
G	4260436	4260436	1	1		A -> G					610	SNP (transition)			30.2%	0.0
C	4260450	4260450	1	1		T -> C					647	SNP (transition)			35.5%	0.0
	4260453	4260453	1	1		(T)4 -> (T)3					667	Deletion (tandem repeat)			32.1%	1.3E-313
T	4325756	4325756	1	1		G -> T					43	SNP (transversion)			25.6%	4.3E-13
G	4325776	4325776	1	1		C -> G					36	SNP (transversion)			58.3%	1.8E-64
A	4325779	4325779	1	1		C -> A					37	SNP (transversion)			51.4%	5.6E-57
GG	4325783	4325784	2	1		TT -> GG					35	Substitution			48.6%	1.4E-50
	4325785	4325786	2	1		-CC					33 -> 34	Deletion			29.4% -> 30.3%	1.2E-18
A	4325790	4325790	1	1		C -> A					33	SNP (transversion)			30.3%	9.2E-26
CC	4325794	4325795	2	1		GA -> CC					30 -> 31	Substitution			32.3% -> 33.3%	3.0E-27
	4325798	4325798	1	1		(A)4 -> (A)3					31	Deletion (tandem repeat)			29.0%	4.7E-15
T	4325800	4325800	1	1		G -> T					31	SNP (transversion)			29.0%	8.0E-26
C	4325803	4325803	1	1		G -> C					30	SNP (transversion)			36.7%	1.7E-31
G	4325807	4325807	1	1		A -> G					32	SNP (transition)			28.1%	1.1E-25
TG	4325820	4325821	2	1		AC -> TG					27	Substitution			25.9%	2.8E-19
T	4325877	4325877	1	1		G -> T					9	SNP (transversion)			77.8%	3.5E-13
G	4325940	4325940	1	1		A -> G					11	SNP (transition)			27.3%	8.2E-8
T	4326061	4326061	1	1		C -> T					16	SNP (transition)			100.0%	4.0E-15
G	4326224	4326224	1	1		A -> G					44	SNP (transition)			31.8%	3.0E-7
T	4326295	4326295	1	1		C -> T					41	SNP (transition)			48.8%	2.2E-29
A	4326354	4326354	1	1		C -> A					20	SNP (transversion)			60.0%	9.9E-14
G	4326361	4326361	1	1		A -> G					21	SNP (transition)			47.6%	2.9E-12
C	4326365	4326365	1	1		A -> C					24	SNP (transversion)			58.3%	1.1E-19
C	4326441	4326441	1	1		T -> C					68	SNP (transition)			42.6%	1.7E-45
T	4326495	4326495	1	1		C -> T					78	SNP (transition)			25.6%	1.6E-30
T	4326505	4326505	1	1		C -> T					84	SNP (transition)			33.3%	3.4E-54
CA	4326655	4326656	2	1		GG -> CA					81 -> 82	Substitution			27.2% -> 28.0%	2.9E-23
C	4326658	4326658	1	1		T -> C					77	SNP (transition)			26.0%	6.2E-19

(v.1.17.3)

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