Selected Cell
Cell:
Value:
Outline
1P_vulgatus_ATCC_8482
2Proteomic_data
3Amino_acids
4Nucleotide
5Fatty_acdis_cell_wall
6Metabolites
7Metabolome_CoA
8Exo_Metabolome
A
B
C
D
E
F
G
H
I
J
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
Tab | Name | Contents | |||||||
1 | 1P_vulgatus_ATCC_8482 | Genome of P. vulgatus ATCC 8482 | |||||||
2 | 2Proteomics_data | Identified proteins with peptide counts | |||||||
3 | 3Amino_acids | BioCyc-predicted biosynthesis of amino acids including identified proteins | |||||||
4 | 4Nucleotide | BioCyc-predicted biosynthesis of nucleotides including identified proteins | |||||||
5 | 5Fatty_acdis_cell_wall | BioCyc-predicted biosynthesis of fatty acids and cell wall including identified proteins | |||||||
6 | 6Metabolites | Metabolites of the intracellular metabolome | |||||||
7 | 7Metabolome_CoA | CoAs of the metabolome | |||||||
8 | 8Exo_Metabolome | Metabolites of the extracellular metabolome | |||||||
A
B
C
D
E
F
G
H
I
J
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
BVU_RS03655 | BVU_0717 | 995575 | 995868 | 97 | c | BVU_RS03655 | helix-turn-helix domain-containing protein | ||
BVU_RS03660 | BVU_0718 | 996278 | 996577 | 99 | BVU_RS03660 | helix-turn-helix domain-containing protein | |||
BVU_RS03665 | BVU_0719 | 996574 | 996876 | 100 | BVU_RS03665 | helix-turn-helix domain-containing protein | |||
BVU_RS03670 | BVU_0720 | 997158 | 998456 | 432 | c | BVU_RS03670 | ATP-binding protein | ||
BVU_RS03675 | BVU_0722 | 999205 | 1000449 | 414 | BVU_RS03675 | ATP-binding protein | |||
BVU_RS03680 | BVU_0723 | 1000458 | 1001000 | 180 | BVU_RS03680 | RloB family protein | |||
BVU_RS03685 | BVU_0724 | 1001011 | 1001364 | 117 | BVU_RS03685 | hypothetical protein | |||
BVU_RS03690 | BVU_0725 | 1001503 | 1001730 | 75 | c | BVU_RS03690 | hypothetical protein | ||
BVU_RS03695 | BVU_0726 | 1001967 | 1002548 | 193 | BVU_RS03695 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | |||
BVU_RS03700 | 1002553 | 1003428 | 291 | BVU_RS03700 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | ||||
BVU_RS03705 | 1004132 | 1004398 | 88 | c | BVU_RS03705 | hypothetical protein | |||
BVU_RS03710 | BVU_0730 | 1004379 | 1005209 | 276 | c | BVU_RS03710 | porin | ||
BVU_RS03715 | BVU_0731 | 1005443 | 1006480 | 345 | c | BVU_RS03715 | prolyl oligopeptidase family serine peptidase | ||
BVU_RS03720 | BVU_0732 | 1006513 | 1007955 | 480 | c | BVU_RS03720 | RagB/SusD family nutrient uptake outer membrane protein | ||
BVU_RS03725 | BVU_0733 | 1007986 | 1011282 | 1098 | c | BVU_RS03725 | TonB-dependent receptor | ||
BVU_RS03730 | BVU_0734 | 1011439 | 1012437 | 332 | c | BVU_RS03730 | FecR family protein | ||
BVU_RS03735 | BVU_0735 | 1012498 | 1013088 | 196 | c | BVU_RS03735 | RNA polymerase sigma-70 factor | ||
BVU_RS03740 | BVU_0736 | 1013984 | 1016140 | 718 | c | BVU_RS03740 | 3.2.1.22 | alpha-galactosidase | |
BVU_RS03745 | BVU_0737 | 1016328 | 1017224 | 298 | BVU_RS03745 | AraC family transcriptional regulator | |||
BVU_RS03750 | BVU_0738 | 1017237 | 1019192 | 651 | c | BVU_RS03750 | 9-O-acetylesterase | ||
BVU_RS03755 | BVU_0739 | 1019207 | 1021153 | 648 | c | BVU_RS03755 | RagB/SusD family nutrient uptake outer membrane protein | ||
BVU_RS03760 | BVU_0740 | 1021182 | 1024319 | 1045 | c | BVU_RS03760 | TonB-dependent receptor | ||
BVU_RS03765 | BVU_0741 | 1024400 | 1026673 | 757 | c | BVU_RS03765 | glycoside hydrolase family 3 C-terminal domain-containing protein | ||
BVU_RS03770 | BVU_0742 | 1026685 | 1029627 | 980 | c | BVU_RS03770 | discoidin domain-containing protein | ||
BVU_RS03775 | BVU_0743 | 1029657 | 1030679 | 340 | c | BVU_RS03775 | galactose mutarotase | ||
BVU_RS03780 | BVU_0744 | 1030769 | 1032388 | 539 | c | BVU_RS03780 | RagB/SusD family nutrient uptake outer membrane protein | ||
BVU_RS03785 | BVU_0745 | 1032434 | 1035487 | 1017 | c | BVU_RS03785 | TonB-dependent receptor | ||
BVU_RS03790 | BVU_0746 | 1035527 | 1037554 | 675 | c | BVU_RS03790 | alpha-galactosidase | ||
BVU_RS03795 | BVU_0747 | 1037758 | 1041795 | 1345 | c | BVU_RS03795 | hybrid sensor histidine kinase/response regulator transcription factor | ||
BVU_RS03800 | 1041879 | 1043864 | 661 | c | BVU_RS03800 | glycoside hydrolase family 97 protein | |||
BVU_RS03805 | BVU_0750 | 1043861 | 1047202 | 1113 | c | BVU_RS03805 | DUF5107 domain-containing protein | ||
BVU_RS03810 | BVU_0751 | 1047215 | 1048609 | 464 | c | BVU_RS03810 | sugar porter family MFS transporter | ||
BVU_RS03815 | BVU_0752 | 1048819 | 1051581 | 920 | c | BVU_RS03815 | 3.2.1.- | GH92 family glycosyl hydrolase | |
BVU_RS03820 | BVU_0753 | 1051652 | 1054054 | 800 | c | BVU_RS03820 | glycoside hydrolase N-terminal domain-containing protein | ||
BVU_RS03825 | BVU_0754 | 1054174 | 1056456 | 760 | c | BVU_RS03825 | 3.2.1.- | GH92 family glycosyl hydrolase | |
BVU_RS03830 | BVU_0755 | 1056491 | 1058707 | 738 | c | BVU_RS03830 | 3.2.1.- | GH92 family glycosyl hydrolase | |
BVU_RS03835 | BVU_0756 | 1058992 | 1062459 | 1155 | BVU_RS03835 | AAA domain-containing protein | |||
BVU_RS03840 | BVU_0757 | 1062608 | 1063789 | 393 | c | BVU_RS03840 | DUF418 domain-containing protein | ||
BVU_RS03845 | BVU_0759 | 1064114 | 1065385 | 423 | c | BVU_RS03845 | ATP-binding protein | ||
BVU_RS03850 | BVU_0760 | 1065609 | 1066781 | 390 | BVU_RS03850 | iron-containing alcohol dehydrogenase | |||
BVU_RS03855 | BVU_0761 | 1066781 | 1067536 | 251 | BVU_RS03855 | creatininase family protein | |||
BVU_RS03860 | BVU_0762 | 1068185 | 1071526 | 1113 | BVU_RS03860 | TonB-dependent receptor | |||
BVU_RS03865 | BVU_0763 | 1071548 | 1073113 | 521 | BVU_RS03865 | RagB/SusD family nutrient uptake outer membrane protein | |||
BVU_RS03870 | BVU_0764 | 1073532 | 1073804 | 90 | BVU_RS03870 | hypothetical protein | |||
BVU_RS03875 | BVU_0765 | 1073928 | 1075091 | 387 | BVU_RS03875 | DUF4221 domain-containing protein | |||
BVU_RS03880 | BVU_0766 | 1075088 | 1075816 | 242 | BVU_RS03880 | DUF1573 domain-containing protein | |||
BVU_RS03885 | BVU_0767 | 1075881 | 1076324 | 147 | c | BVU_RS03885 | acyl-CoA thioesterase | ||
BVU_RS03890 | BVU_0768 | 1076374 | 1076724 | 116 | BVU_RS03890 | transposase family protein | |||
BVU_RS03895 | BVU_0769 | 1076735 | 1077739 | 334 | BVU_RS03895 | transposase | |||
BVU_RS03900 | BVU_0770 | 1077919 | 1079196 | 425 | BVU_RS03900 | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | |||
BVU_RS03905 | BVU_0771 | 1079207 | 1079935 | 242 | BVU_RS03905 | SDR family NAD(P)-dependent oxidoreductase | |||
BVU_RS03910 | 1080270 | 1080764 | 164 | BVU_RS03910 | DUF4252 domain-containing protein | ||||
BVU_RS03915 | BVU_0772 | 1080751 | 1081263 | 170 | BVU_RS03915 | RNA polymerase sigma factor | |||
BVU_RS03920 | BVU_0773 | 1081250 | 1081780 | 176 | BVU_RS03920 | hypothetical protein | |||
BVU_RS03925 | BVU_0774 | 1081777 | 1082235 | 152 | BVU_RS03925 | DUF4252 domain-containing protein | |||
BVU_RS03930 | BVU_0775 | 1082490 | 1083161 | 223 | c | BVU_RS03930 | hypothetical protein | ||
BVU_RS03940 | BVU_0776 | 1083492 | 1085291 | 599 | BVU_RS03940 | MutS family DNA mismatch repair protein | |||
BVU_RS03945 | BVU_0777 | 1085386 | 1085925 | 179 | c | BVU_RS03945 | hypothetical protein | ||
BVU_RS03950 | BVU_0778 | 1086044 | 1086469 | 141 | c | BVU_RS03950 | hypothetical protein | ||
BVU_RS03955 | BVU_0779 | 1086880 | 1087368 | 162 | c | rplQ | 50S ribosomal protein L17 | ||
BVU_RS03960 | BVU_0780 | 1087372 | 1088364 | 330 | c | BVU_RS03960 | 2.7.7.6 | DNA-directed RNA polymerase subunit alpha | |
BVU_RS03965 | BVU_0781 | 1088376 | 1088981 | 201 | c | rpsD | 30S ribosomal protein S4 | ||
BVU_RS03970 | BVU_0782 | 1089098 | 1089487 | 129 | c | rpsK | 30S ribosomal protein S11 | ||
BVU_RS03975 | BVU_0783 | 1089499 | 1089879 | 126 | c | rpsM | 30S ribosomal protein S13 | ||
BVU_RS21295 | 1089913 | 1090029 | 38 | c | ykgO | type B 50S ribosomal protein L36 | |||
BVU_RS03980 | BVU_4300 | 1090044 | 1090262 | 72 | c | infA | translation initiation factor IF-1 | ||
BVU_RS03985 | BVU_0784 | 1090264 | 1091061 | 265 | c | map | 3.4.11.18 | type I methionyl aminopeptidase | |
BVU_RS03990 | BVU_0785 | 1091072 | 1092418 | 448 | c | secY | preprotein translocase subunit SecY | ||
BVU_RS03995 | BVU_0786 | 1092423 | 1092869 | 148 | c | rplO | 50S ribosomal protein L15 | ||
BVU_RS04000 | BVU_0787 | 1092900 | 1093076 | 58 | c | rpmD | 50S ribosomal protein L30 | ||
BVU_RS04005 | BVU_0788 | 1093086 | 1093601 | 171 | c | rpsE | 30S ribosomal protein S5 | ||
BVU_RS04010 | BVU_0789 | 1093608 | 1093949 | 113 | c | rplR | 50S ribosomal protein L18 | ||
BVU_RS04015 | BVU_0790 | 1093971 | 1094540 | 189 | c | rplF | 50S ribosomal protein L6 | ||
BVU_RS04020 | BVU_0791 | 1094555 | 1094950 | 131 | c | rpsH | 30S ribosomal protein S8 | ||
BVU_RS04025 | BVU_0792 | 1095008 | 1095307 | 99 | c | rpsN | 30S ribosomal protein S14 | ||
BVU_RS04030 | BVU_0793 | 1095314 | 1095871 | 185 | c | rplE | 50S ribosomal protein L5 | ||
BVU_RS04035 | BVU_0794 | 1095871 | 1096194 | 107 | c | rplX | 50S ribosomal protein L24 | ||
BVU_RS04040 | BVU_0795 | 1096215 | 1096580 | 121 | c | rplN | 50S ribosomal protein L14 | ||
BVU_RS04045 | BVU_0796 | 1096583 | 1096840 | 85 | c | rpsQ | 30S ribosomal protein S17 | ||
BVU_RS04050 | BVU_0797 | 1096852 | 1097046 | 64 | c | rpmC | 50S ribosomal protein L29 | ||
BVU_RS04055 | BVU_0798 | 1097053 | 1097487 | 144 | c | rplP | 50S ribosomal protein L16 | ||
BVU_RS04060 | BVU_0799 | 1097509 | 1098240 | 243 | c | rpsC | 30S ribosomal protein S3 | ||
BVU_RS04065 | BVU_0800 | 1098247 | 1098657 | 136 | c | rplV | 50S ribosomal protein L22 | ||
BVU_RS04070 | BVU_0801 | 1098694 | 1098963 | 89 | c | rpsS | 30S ribosomal protein S19 | ||
BVU_RS04075 | BVU_0802 | 1098986 | 1099807 | 273 | c | rplB | 50S ribosomal protein L2 | ||
BVU_RS04080 | BVU_0803 | 1099813 | 1100103 | 96 | c | rplW | 50S ribosomal protein L23 | ||
BVU_RS04085 | BVU_0804 | 1100125 | 1100751 | 208 | c | rplD | 50S ribosomal protein L4 | ||
BVU_RS04090 | BVU_0805 | 1100751 | 1101368 | 205 | c | rplC | 50S ribosomal protein L3 | ||
BVU_RS04095 | BVU_0806 | 1101389 | 1101694 | 101 | c | rpsJ | 30S ribosomal protein S10 | ||
BVU_RS04100 | BVU_0807 | 1101779 | 1103896 | 705 | c | fusA | elongation factor G | ||
BVU_RS04105 | BVU_0808 | 1103928 | 1104404 | 158 | c | rpsG | 30S ribosomal protein S7 | ||
BVU_RS04110 | BVU_0809 | 1104553 | 1104966 | 137 | c | rpsL | 30S ribosomal protein S12 | ||
BVU_RS04115 | BVU_0810 | 1105155 | 1105496 | 113 | c | BVU_RS04115 | DUF3467 domain-containing protein | ||
BVU_RS04120 | BVU_0811 | 1105717 | 1107372 | 551 | c | BVU_RS04120 | IS1182 family transposase | ||
BVU_RS04125 | BVU_0812 | 1107511 | 1111797 | 1428 | c | rpoC | 2.7.7.6 | DNA-directed RNA polymerase subunit beta' | |
BVU_RS04130 | BVU_0813 | 1111836 | 1115648 | 1270 | c | rpoB | 2.7.7.6 | DNA-directed RNA polymerase subunit beta | |
BVU_RS04135 | BVU_0814 | 1115751 | 1116125 | 124 | c | rplL | 50S ribosomal protein L7/L12 | ||
BVU_RS04140 | BVU_0815 | 1116172 | 1116690 | 172 | c | rplJ | 50S ribosomal protein L10 | ||
BVU_RS04145 | BVU_0816 | 1116706 | 1117404 | 232 | c | rplA | 50S ribosomal protein L1 | ||
BVU_RS04150 | BVU_0817 | 1117420 | 1117863 | 147 | c | rplK | 50S ribosomal protein L11 |
A
B
C
D
E
F
G
H
I
J
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
Average [peptide count] | |||||||||
Accession No. | Locustag old | Locustag | Genome predicted funtion | 1/2ODmax | ODmax | ODstat | |||
ABR37733.1 | BVU_0003 | BVU_RS00015 | putative ribonucleoside reductase [Phocaeicola vulgatus ATCC 8482] | 8 | 5.75 | 2 | |||
ABR37734.1 | BVU_0004 | BVU_RS00020 | putative exported protein [Phocaeicola vulgatus ATCC 8482] | 2 | 0 | 0 | |||
ABR37741.1 | BVU_0011 | BVU_RS00060 | putative 50S ribosomal protein L9 [Phocaeicola vulgatus ATCC 8482] | 14 | 13.75 | 13 | |||
ABR37742.1 | BVU_0012 | BVU_RS00065 | 30S ribosomal protein S18 [Phocaeicola vulgatus ATCC 8482] | 71 | 56.25 | 69 | |||
ABR37743.1 | BVU_0013 | BVU_RS00070 | 30S ribosomal protein S6 [Phocaeicola vulgatus ATCC 8482] | 10.5 | 16.25 | 16.75 | |||
ABR37745.1 | BVU_0015 | BVU_RS00085 | two-component system response regulator [Phocaeicola vulgatus ATCC 8482] | 24.75 | 59.75 | 69.75 | |||
ABR37746.1 | BVU_0016 | BVU_RS00090 | two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482] | 5.25 | 1.25 | 2.25 | |||
ABR37747.1 | BVU_0017 | BVU_RS00095 | putative elongation factor G [Phocaeicola vulgatus ATCC 8482] | 0 | 36 | 17.75 | |||
ABR37776.1 | BVU_0046 | BVU_RS00240 | phosphoglucomutase/phosphomannomutase [Phocaeicola vulgatus ATCC 8482] | 1.75 | 5.5 | 5.25 | |||
ABR37803.1 | BVU_0073 | BVU_RS00375 | DnaJ domain protein [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 1 | |||
ABR37808.1 | BVU_0078 | BVU_RS00400 | putative phosphoribosylformylglycinamidine synthase [Phocaeicola vulgatus ATCC 8482] | 16.5 | 9.75 | 1 | |||
ABR37812.1 | BVU_0082 | BVU_RS00420 | putative secreted protein [Phocaeicola vulgatus ATCC 8482] | 2.75 | 1.25 | 0 | |||
ABR37814.1 | BVU_0084 | BVU_RS00430 | putative endonuclease/exonuclease/phosphatase family protein [Phocaeicola vulgatus ATCC 8482] | 0.75 | 0 | 3 | |||
ABR37815.1 | BVU_0085 | BVU_RS00435 | glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482] | 4.75 | 6.5 | 8.5 | |||
ABR37816.1 | BVU_0086 | BVU_RS00440 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 14.75 | 18 | 9.75 | |||
ABR37822.1 | BVU_0092 | BVU_RS00475 | putative phosphoribosylformylglycinamidine cyclo-ligase [Phocaeicola vulgatus ATCC 8482] | 0.75 | 1.75 | 0.5 | |||
ABR37825.1 | BVU_0095 | BVU_RS00485 | orotidine 5'-phosphate decarboxylase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1.5 | |||
ABR37827.1 | BVU_0097 | BVU_RS00495 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Phocaeicola vulgatus ATCC 8482] | 1 | 2.25 | 0.75 | |||
ABR37828.1 | BVU_0098 | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Phocaeicola vulgatus ATCC 8482] | 32.75 | 15.25 | 8.25 | |||
ABR37829.1 | BVU_0099 | BVU_RS00505 | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482] | 0 | 1.75 | 3.5 | |||
ABR37853.1 | BVU_0123 | BVU_RS00625 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 3.25 | 4.75 | |||
ABR37871.1 | BVU_0143 | BVU_RS00725 | GTP cyclohydrolase II [Phocaeicola vulgatus ATCC 8482] | 3.25 | 3 | 3.5 | |||
ABR37872.1 | BVU_0144 | BVU_RS00730 | aspartate aminotransferase [Phocaeicola vulgatus ATCC 8482] | 20.5 | 20.5 | 20.25 | |||
ABR37874.1 | BVU_0146 | BVU_RS00745 | 5'-nucleotidase precursor [Phocaeicola vulgatus ATCC 8482] | 1 | 0.5 | 0 | |||
ABR37875.1 | BVU_0147 | BVU_RS00750 | putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase [Phocaeicola vulgatus ATCC 8482] | 3 | 2 | 1.5 | |||
ABR37876.1 | BVU_0148 | BVU_RS00755 | 50S ribosomal protein L19 [Phocaeicola vulgatus ATCC 8482] | 16.5 | 24 | 29 | |||
ABR37885.1 | BVU_0157 | BVU_RS00815 | conserved protein, with a weak D-galactarate dehydratase/altronate hydrolase domain [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 0 | |||
ABR37897.1 | BVU_0169 | BVU_RS00870 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 7 | 0 | 6.25 | |||
ABR37919.1 | BVU_0191 | BVU_RS00975 | ROK family transcriptional repressor, with glucokinase domain [Phocaeicola vulgatus ATCC 8482] | 8.25 | 12.5 | 15.75 | |||
ABR37923.1 | BVU_0195 | BVU_RS00995 | membrane fusion efflux protein [Phocaeicola vulgatus ATCC 8482] | 14.5 | 10 | 12.25 | |||
ABR37924.1 | BVU_0196 | BVU_RS01000 | putative outer membrane efflux protein [Phocaeicola vulgatus ATCC 8482] | 1.75 | 2.5 | 2 | |||
ABR37926.1 | BVU_0198 | BVU_RS01010 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 1.75 | 4.25 | |||
ABR37928.1 | BVU_0200 | BVU_RS01020 | putative alcohol dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1 | |||
ABR37929.1 | BVU_0201 | BVU_RS01025 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 4.5 | 4.5 | |||
ABR37933.1 | BVU_0205 | BVU_RS01045 | aspartate-semialdehyde dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 22.25 | 32.75 | 31.25 | |||
ABR37934.1 | BVU_0206 | BVU_RS01050 | putative FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [Phocaeicola vulgatus ATCC 8482] | 8.25 | 5 | 5.5 | |||
ABR37935.1 | BVU_0207 | BVU_RS01055 | glycyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482] | 4 | 5.75 | 2 | |||
ABR37960.1 | BVU_0238 | BVU_RS01205 | putative membrane fusion protein transporter [Phocaeicola vulgatus ATCC 8482] | 10.75 | 7.25 | 6.75 | |||
ABR37963.1 | BVU_0241 | BVU_RS01220 | acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482] | 2 | 2.75 | 1.5 | |||
ABR37964.1 | BVU_0242 | BVU_RS01225 | outer membrane protein oprM precursor [Phocaeicola vulgatus ATCC 8482] | 35.25 | 11.5 | 8 | |||
ABR37965.1 | BVU_0243 | BVU_RS01230 | AcrB/AcrD family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482] | 7 | 1 | 1.75 | |||
ABR37966.1 | BVU_0244 | BVU_RS01235 | AcrA/AcrE family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482] | 50 | 24 | 20 | |||
ABR37967.1 | BVU_0245 | BVU_RS01240 | NADP-dependent malate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 17.5 | 23.25 | 11.75 | |||
ABR37968.1 | BVU_0246 | BVU_RS01250 | NADP-specific glutamate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 76.5 | 66.25 | 43 | |||
ABR37969.1 | BVU_0247 | BVU_RS01255 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 23.25 | 16.5 | 9.75 | |||
ABR37970.1 | BVU_0248 | BVU_RS01260 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 23.25 | 13 | 15.25 | |||
ABR37971.1 | BVU_0249 | BVU_RS01265 | hypothetical protein BVU_0249 [Phocaeicola vulgatus ATCC 8482] | 58.5 | 38.25 | 62.75 | |||
ABR37973.1 | BVU_0251 | BVU_RS01275 | NAD-specific glutamate dehydrogenase 1 [Phocaeicola vulgatus ATCC 8482] | 0 | 10.25 | 11.75 | |||
ABR37974.1 | BVU_0252 | BVU_RS01280 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1 | 1 | 0 | |||
ABR37978.1 | BVU_0256 | BVU_RS01300 | malate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 56.5 | 72 | 86 | |||
ABR37979.1 | BVU_0257 | BVU_RS01305 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 22 | 10.75 | 15.25 | |||
ABR37983.1 | BVU_0263 | BVU_RS01330 | lipoprotein [Phocaeicola vulgatus ATCC 8482] | 64 | 61.5 | 65.25 | |||
ABR37986.1 | BVU_0266 | BVU_RS01345 | Mrp/Nbp35 family ATP-binding protein [Phocaeicola vulgatus ATCC 8482] | 3.75 | 4.75 | 7.75 | |||
ABR37988.1 | BVU_0268 | BVU_RS01355 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 8.75 | 2.25 | 6 | |||
ABR37989.1 | BVU_0269 | BVU_RS01360 | branched-chain amino acid aminotransferase [Phocaeicola vulgatus ATCC 8482] | 6.75 | 23.75 | 17.5 | |||
ABR38002.1 | BVU_0282 | BVU_RS01425 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1 | 1.25 | 1.75 | |||
ABR38018.1 | BVU_0298 | BVU_RS01520 | dTDP-glucose 4,6-dehydratase [Phocaeicola vulgatus ATCC 8482] | 2 | 6.5 | 6.5 | |||
ABR38029.1 | BVU_0309 | BVU_RS01575 | putative methylmalonyl-CoA mutase small subunit [Phocaeicola vulgatus ATCC 8482] | 11.5 | 7.75 | 5 | |||
ABR38030.1 | BVU_0310 | BVU_RS01580 | methylmalonyl-CoA mutase large subunit [Phocaeicola vulgatus ATCC 8482] | 16.25 | 19 | 6.5 | |||
ABR38035.1 | BVU_0315 | BVU_RS01605 | putative two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482] | 1.5 | 1.75 | 1 | |||
ABR38036.1 | BVU_0316 | BVU_RS01610 | putative membrane transport protein [Phocaeicola vulgatus ATCC 8482] | 2.5 | 0 | 0.75 | |||
ABR38037.1 | BVU_0317 | BVU_RS01615 | putative cation efflux pump [Phocaeicola vulgatus ATCC 8482] | 0 | 0.75 | 0 | |||
ABR38038.1 | BVU_0318 | BVU_RS01620 | putative cation efflux pump [Phocaeicola vulgatus ATCC 8482] | 1.5 | 5.25 | 3.5 | |||
ABR38039.1 | BVU_0319 | BVU_RS01625 | outer membrane efflux protein oprM precursor [Phocaeicola vulgatus ATCC 8482] | 2 | 3.25 | 8.5 | |||
ABR38040.1 | BVU_0320 | BVU_RS01630 | hypothetical protein BVU_0320 [Phocaeicola vulgatus ATCC 8482] | 0 | 2.75 | 3.25 | |||
ABR38045.1 | BVU_0325 | BVU_RS01655 | electron transfer flavoprotein beta-subunit [Phocaeicola vulgatus ATCC 8482] | 7 | 15.75 | 14.5 | |||
ABR38046.1 | BVU_0326 | BVU_RS01660 | electron transfer flavoprotein alpha-subunit [Phocaeicola vulgatus ATCC 8482] | 1.25 | 1.75 | 0 | |||
ABR38048.1 | BVU_0328 | BVU_RS01670 | acyl-CoA dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 8.25 | 7 | 3.5 | |||
ABR38049.1 | BVU_0329 | BVU_RS01675 | putative histidine decarboxylase [Phocaeicola vulgatus ATCC 8482] | 0 | 4.75 | 6 | |||
ABR38050.1 | BVU_0330 | BVU_RS01680 | putative phenylacetic acid degradation protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0.75 | |||
ABR38051.1 | BVU_0331 | BVU_RS01685 | putative DNA mismatch repair protein [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 1.25 | |||
ABR38060.1 | BVU_0340 | BVU_RS01735 | putative oxidoreductase [Phocaeicola vulgatus ATCC 8482] | 8.5 | 8.25 | 6 | |||
ABR38064.1 | BVU_0345 | BVU_RS01760 | 60 kDa chaperonin [Phocaeicola vulgatus ATCC 8482] | 46.25 | 82.75 | 73 | |||
ABR38065.1 | BVU_0346 | BVU_RS01765 | 10 kDa chaperonin [Phocaeicola vulgatus ATCC 8482] | 21.75 | 31.5 | 36.75 | |||
ABR38070.1 | BVU_0351 | BVU_RS01790 | histidyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482] | 5.75 | 7 | 7 | |||
ABR38080.1 | BVU_0361 | BVU_RS01845 | 3,4-dihydroxy-2-butanone 4-phosphate synthase [Phocaeicola vulgatus ATCC 8482] | 3.5 | 2.5 | 2.25 | |||
ABR38092.1 | BVU_0373 | BVU_RS01905 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 9 | 14 | 15.75 | |||
ABR38093.1 | BVU_0374 | BVU_RS01910 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 3.25 | 2 | 4 | |||
ABR38094.1 | BVU_0375 | BVU_RS01915 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 2.25 | 1.25 | 2 | |||
ABR38096.1 | BVU_0377 | BVU_RS01920 | peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Phocaeicola vulgatus ATCC 8482] | 0 | 2 | 0 | |||
ABR38099.1 | BVU_0380 | BVU_RS01935 | two-component system sensor histidine kinase, with response regulator receiver domain [Phocaeicola vulgatus ATCC 8482] | 2.75 | 0 | 0 | |||
ABR38103.1 | BVU_0384 | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase [Phocaeicola vulgatus ATCC 8482] | 20 | 23.75 | 27.75 | |||
ABR38113.1 | BVU_0395 | BVU_RS02010 | hypothetical protein BVU_0395 [Phocaeicola vulgatus ATCC 8482] | 10 | 4.5 | 5.5 | |||
ABR38120.1 | BVU_0402 | BVU_RS02055 | putative cysteine synthase [Phocaeicola vulgatus ATCC 8482] | 0 | 1.5 | 2.75 | |||
ABR38123.1 | BVU_0408 | BVU_RS02085 | tryptophanyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482] | 3.25 | 2.25 | 0 | |||
ABR38124.1 | BVU_0409 | BVU_RS02090 | hypothetical protein BVU_0409 [Phocaeicola vulgatus ATCC 8482] | 19 | 7.5 | 8.5 | |||
ABR38125.1 | BVU_0410 | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase [Phocaeicola vulgatus ATCC 8482] | 83.75 | 29 | 4.75 | |||
ABR38127.1 | BVU_0412 | BVU_RS02105 | putative protein disulfide isomerase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0.75 | |||
ABR38129.1 | BVU_0414 | BVU_RS02115 | major outer membrane protein OmpA [Phocaeicola vulgatus ATCC 8482] | 417.25 | 912.25 | 1338.25 | |||
ABR38135.1 | BVU_0420 | BVU_RS02145 | CysQ, sulfite synthesis pathway protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0.75 | 0 | |||
ABR38136.1 | BVU_0421 | BVU_RS02150 | conserved hypothetical exported protein [Phocaeicola vulgatus ATCC 8482] | 2.5 | 1.5 | 1.25 | |||
ABR38137.1 | BVU_0422 | BVU_RS02155 | DNA mismatch repair protein mutL [Phocaeicola vulgatus ATCC 8482] | 0 | 3 | 4.5 | |||
ABR38138.1 | BVU_0423 | BVU_RS02160 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 3 | |||
ABR38140.1 | BVU_0425 | BVU_RS02170 | peptidyl-prolyl cis-trans isomerase [Phocaeicola vulgatus ATCC 8482] | 7.75 | 9 | 6.75 | |||
ABR38141.1 | BVU_0426 | BVU_RS02175 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 5 | 0.75 | 0 | |||
ABR38143.1 | BVU_0428 | BVU_RS02185 | inosine-5'-monophosphate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 25 | 28.75 | 28.75 | |||
ABR38157.1 | BVU_0442 | BVU_RS02265 | ATP-dependent DNA helicase recQ [Phocaeicola vulgatus ATCC 8482] | 9 | 12 | 4.25 | |||
ABR38158.1 | BVU_0443 | BVU_RS02270 | ATP-dependent Clp protease ATP-binding subunit [Phocaeicola vulgatus ATCC 8482] | 3.5 | 4.5 | 3.5 |
A
B
C
D
E
F
G
H
I
J
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
Name | Locus tag | Function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
glycine biosynthesis I | |||||||||
GlyA | BVU_RS16795 | serine hydroxymethyltransferase | 7 | 18 | 18 | ||||
glycine biosynthesis II | |||||||||
GcvP | BVU_RS15125 | glycine dehydrogenase | 0 | 2 | 0 | ||||
L-alanine biosynthesis I | |||||||||
- | BVU_RS06885 | cysteine desulfurase | 0 | 0 | 1 | ||||
L-arginine biosynthesis (via L-ornithine) | |||||||||
ArgB | - | - | - | - | - | ||||
ArgB | BVU_RS06775 | putative acetylglutamate kinase | 0 | 0 | 1 | ||||
- | BVU_RS03000 | N-acetyl-gamma-glutamyl-phosphate reductase | 3 | 2 | 2 | ||||
- | BVU_RS02995 | acetylornithine aminotransferase | 3 | 4 | 5 | ||||
- | BVU_RS07505 | - | - | - | - | ||||
- | BVU_RS20030 | carbamyl phosphate synthetase | 28 | 13 | 3 | ||||
- | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2 | 5 | 4 | ||||
- | BVU_RS20255 | - | - | - | - | ||||
- | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
- | BVU_RS02805 | ornithine carbamoyltransferase | 3 | 3 | 4 | ||||
- | BVU_RS03005 | argininosuccinate synthase | 6 | 9 | 7 | ||||
ArgH | - | - | - | - | - | ||||
L-asparagine biosynthesis I | |||||||||
AsnB | - | asparagine synthase B | - | - | - | ||||
L-asparagine biosynthesis II | |||||||||
- | BVU_RS20790 | asparagine synthase A | 6 | 6 | 0 | ||||
L-aspartate biosynthesis | |||||||||
- | BVU_RS11395 | aspartate 4-decarboxylase | 0 | 0 | 1 | ||||
L-cystein biosynthesis I | |||||||||
- | BVU_RS05520 | serine acetyltransferase | 0 | 0 | 1 | ||||
CysK | BVU_RS02055 | cysteine synthase A | 0 | 2 | 3 | ||||
L-cystein biosynthesis IV | |||||||||
- | BVU_RS05985 | S-adenosylmethionine synthase | 3 | 3 | 3 | ||||
- | BVU_RS07105 | 2.1.1.- / S-adenosyl-methyltransferase | 0 | 0 | 2 | ||||
- | BVU_RS04530 | S-adenosylhomocysteine nucleosidase | 1 | 2 | 1 | ||||
- | BVU_RS04535 | S-ribosylhomocysteine lyase | 0 | 0 | 2 | ||||
- | - | 4.2.1.22 | - | - | - | ||||
- | BVU_RS10335 | 2.5.1.48 / homoserine O-succinyltransferase | 0 | 0 | 1 | ||||
L-glutamate biosynthesis II | |||||||||
- | BVU_RS01250 | glutamate dehydrogenase | 77 | 66 | 43 | ||||
- | BVU_RS01255 | glutamate dehydrogenase | 23 | 17 | 10 | ||||
L-glutamate biosynthesis III | |||||||||
BVU_RS01275 | glutamate dehydrogenase | 0 | 10 | 12 | |||||
- | BVU_RS01250 | glutamate dehydrogenase | 77 | 66 | 43 | ||||
L-glutamine biosynthesis I | |||||||||
- | BVU_RS17720 | glutamine synthetase | 0 | 1 | 0 | ||||
- | BVU_RS17970 | glutamine synthetase | 10 | 13 | 8 | ||||
- | BVU_RS20050 | glutamine synthetase | - | - | - | ||||
L-histidine biosynthesis | |||||||||
- | BVU_RS11880 | ATP phosphoribosyltransferase | 0 | 1 | 0 | ||||
- | BVU_RS19330 | - | - | - | - | ||||
HisA | BVU_RS19320 | 5.3.1.16 | 4 | 3 | 4 | ||||
HisH | BVU_RS20510 | 4.3.2.- | 1 | 0 | 0 | ||||
HisB | BVU_RS11895 | histidinol-phosphate aminotransferase | - | - | - | ||||
HisC | BVU_RS11890 | 2.6.1.9 | - | - | - | ||||
- | BVU_RS17605 | - | - | - | |||||
HisD | BVU_RS11885 | histidinal dehydrogenase | - | - | - | ||||
L-homocysteine biosynthesis | |||||||||
- | BVU_RS10335 | homoserine O-succinyltransferase | 0 | 0 | 1 | ||||
- | BVU_RS03900 | O-acetylhomoserine (thiol)-lyase | 4 | 2 | 1 | ||||
- | BVU_RS13630 | O-acetylhomoserine (thiol)-lyase | 7 | 4 | 7 | ||||
L-homoserine biosynthesis | |||||||||
- | BVU_RS10375 | putative aspartokinase I-homoserine dehydrogenase | 26 | 21 | 9 | ||||
- | BVU_RS19340 | aspartokinase | 13 | 11 | 8 | ||||
- | BVU_RS01045 | aspartate-semialdehyde dehydrogenase | 22 | 33 | 31 | ||||
L-isoleucine biosynthesis I | |||||||||
- | BVU_RS19515 | threonine ammonia-lyase | - | - | - | ||||
IlvB | BVU_RS12865 | acetolactate synthase large subunit | 2 | 0 | 0 | ||||
IlvN | BVU_RS12870 | acetohydroxyacid synthase small subunit | 9 | 13 | 14 | ||||
IlvC | BVU_RS12880 | ketol-acid reductoisomerase | 22 | 24 | 26 | ||||
- | BVU_RS12860 | dihydroxy-acid dehydratase | 6 | 6 | 5 | ||||
- | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
L-isoleucine biosynthesis IV | |||||||||
- | BVU_RS02915 | propanoate:CoA ligase (AMP-forming) | - | - | - | ||||
- | BVU_RS00045 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
- | BVU_RS19410 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
- | BVU_RS15255 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
- | BVU_RS07510 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
- | BVU_RS04995 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
- | BVU_RS04960 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
IlvB | BVU_RS12865 | acetolactate synthase large subunit | 2 | 0 | 0 | ||||
IlvN | BVU_RS12870 | acetohydroxyacid synthase small subunit | 9 | 13 | 14 | ||||
IlvC | BVU_RS12880 | ketol-acid reductoisomerase | 22 | 24 | 26 | ||||
- | BVU_RS12860 | dihydroxy-acid dehydratase | 6 | 6 | 5 | ||||
- | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
L-leucine biosynthesis | |||||||||
- | BVU_RS10160 | 2-isopropylmalate synthase | 9 | 11 | 8 | ||||
- | BVU_RS10175 | 2-isopropylmalate synthase | 0 | 1 | 0 | ||||
LeuC | BVU_RS10165 | 3-isopropylmalate dehydratase large subunit | 7 | 10 | 6 | ||||
LeuD | BVU_RS10170 | 3-isopropylmalate dehydratase small subunit | 1 | 0 | 0 | ||||
LeuB | BVU_RS10180 | 3-isopropylmalate dehydrogenase | 3 | 3 | 2 | ||||
- | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
L-lysine biosynthesis III | |||||||||
- | BVU_RS10375 | putative aspartokinase I-homoserine dehydrogenase | 26 | 21 | 6 | ||||
- | BVU_RS19340 | aspartokinase | 13 | 11 | 8 | ||||
- | BVU_RS01045 | aspartate-semialdehyde dehydrogenase | 22 | 33 | 31 | ||||
- | BVU_RS16620 | putative dihydrodipicolinate synthase | 1 | 4 | 3 | ||||
DapB | - | - | - | - | - | ||||
- | BVU_RS08435 | putative oxidoreductase | 22 | 40 | 68 | ||||
LysA | BVU_RS19345 | diaminopimelate decarboxylase | 2 | 3 | 1 | ||||
- | BVU_RS20260 | - | - | - | - | ||||
L-lysine biosynthesis VI |
A
B
C
D
E
F
G
H
I
J
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
Name | Locus tag | function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
5-aminoimidazole ribonucleotide biosynthesis II | |||||||||
- | BVU_RS04370 | - | - | - | - | ||||
- | BVU_RS19210 | - | - | - | - | ||||
- | BVU_RS20040 | - | - | - | - | ||||
- | BVU_RS05540 | phosphoribosylamine--glycine ligase | 3 | 3 | 3 | ||||
- | BVU_RS13930 | phosphoribosylglycinamide formyltransferase 2 | 1 | 6 | 5 | ||||
- | BVU_RS00400 | putative phosphoribosylformylglycinamidine synthase | 17 | 10 | 1 | ||||
- | BVU_RS00475 | putative phosphoribosylformylglycinamidine cyclo-ligase | 1 | 2 | 1 | ||||
adenine and adenosine salvage I | |||||||||
- | BVU_RS08145 | purine nucleoside phosphorylase I | 0 | 4 | 7 | ||||
- | BVU_RS06135 | adenine phosphoribosyltransferase | 1 | 1 | 2 | ||||
adenine and adenosine salvage IV | |||||||||
- | BVU_RS04245 | - | - | - | - | ||||
adenosine deoxyriboculeotide de novo synthesis | |||||||||
- | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
- | BVU_RS15620 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
CMP phosphorylation | |||||||||
- | BVU_RS09815 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
guanine and guanosin salvage | |||||||||
- | BVU_RS08145 | purine nucleoside phosphorylase I | 0 | 4 | 7 | ||||
Hpt | BVU_RS08545 | putative hypoxanthine guanine phosphoribosyltransferase | 0 | 3 | 5 | ||||
Xpt | BVU_RS12750 | xanthine phosphoribosyltransferase | 1 | 0 | 0 | ||||
guanosine deoxyriboculeotide de novo synthesis | |||||||||
- | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
- | BVU_RS15620 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
pyrimidine deoxyribonucleosides salvage | |||||||||
- | BVU_RS09765 | cytidine/deoxycytidylate deaminase | 0 | 2 | 3 | ||||
- | BVU_RS09305 | - | - | - | - | ||||
- | BVU_RS09885 | putative thymidylate synthase B | 1 | 0 | 1 | ||||
- | BVU_RS09305 | - | - | - | - | ||||
- | - | 2.7.1.74 | - | - | - | ||||
pyrimidine deoxyribonucleostide phosphorylation | |||||||||
- | BVU_RS09815 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
- | - | 2.7.4.9/12/13; | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
pyrimidine deoxyriboculeotide de novo synthesis | |||||||||
- | - | 3.6.1.15; | - | - | - | ||||
BVU_RS00015 | putative ribonucleoside reductase | 8 | 5.75 | 2 | |||||
- | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
- | BVU_RS15620 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
- | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
- | BVU_RS15620 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
- | BVU_RS07130 | deoxyuridine 5'-triphosphate nucleotidohydrolase | 1 | 0 | 1 | ||||
- | BVU_RS01730 | - | - | - | - | ||||
- | BVU_RS12965 | - | - | - | - | ||||
- | BVU_RS09885 | putative thymidylate synthase B | 1 | 0 | 1 | ||||
- | - | 2.7.4.9/12/13; | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
pyrimidine nucleobases salvage I | |||||||||
- | BVU_RS04955 | - | - | - | - | ||||
- | BVU_RS04990 | - | - | - | - | ||||
pyrimidine ribonucleosides salvage I | |||||||||
BVU_RS16775 | cytidine/deoxycytidylate deaminase | 0 | 2 | 3 | |||||
- | BVU_RS11865 | uridine kinase | 0 | 0 | 1 | ||||
- | - | 2.7.1.213; | - | - | - | ||||
UMP biosynthesis II | |||||||||
- | BVU_RS20030 | carbamoyl phosphate synthetase | 28.25 | 13.25 | 3.25 | ||||
- | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2.25 | 5.25 | 4.25 | ||||
- | BVU_RS20255 | - | - | - | - | ||||
- | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
PyrB | - | aspartate carbamoyltransferase catalytic chain | 0 | 2 | 0 | ||||
- | BVU_RS16780 | aspartate carbamoyltransferase regulatory chain | 1 | 2 | 3 | ||||
- | BVU_RS11365 | dihydroorotase | 0 | 0 | 1 | ||||
- | BVU_RS19405 | putative dihydroorotate dehydrogenase | 0 | 3 | 2 | ||||
- | BVU_RS04365 | orotate phosphoribosyltransferase | 13 | 36 | 48 | ||||
PyrF | BVU_RS00485 | orotidine 5'-phosphate decarboxylase | 0 | 0 | 1.5 | ||||
UMP biosynthesis III | |||||||||
- | BVU_RS20030 | carbamyl phosphate synthetase | 28.25 | 13.25 | 3.25 | ||||
- | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2.25 | 5.25 | 4.25 | ||||
- | BVU_RS20255 | - | - | - | - | ||||
- | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
PyrB | BVU_RS16775 | aspartate carbamoyltransferase catalytic chain | 0 | 2 | 0 | ||||
- | BVU_RS16780 | aspartate carbamoyltransferase regulatory chain | 1 | 2 | 3 | ||||
- | BVU_RS11365 | dihydroorotase | 0 | 0 | 1 | ||||
- | BVU_RS16640 | - | - | - | - | ||||
- | BVU_RS04365 | orotate phosphoribosyltransferase | 13 | 36 | 48 | ||||
PyrF | BVU_RS00485 | orotidine 5'-phosphate decarboxylase | 0 | 0 | 1.5 | ||||
UTP and CTP de novo biosynthesis | |||||||||
- | BVU_RS09490 | uridylate kinase | 1 | 1 | 1 | ||||
- | BVU_RS09815 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
- | BVU_RS16855 | CTP synthase | 9.5 | 8.25 | 3.25 |
A
B
C
D
E
F
G
H
I
J
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
Name | Locustag | function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
fatty acid biosynthesis initiation I | |||||||||
AccC | - | - | - | - | - | ||||
FabD | BVU_RS19990 | malonyl CoA-acyl carrier protein transacylase | 5 | 9 | 6 | ||||
- | BVU_RS02315 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 12 | 6 | 2 | ||||
fatty acid elongation -- saturation | |||||||||
- | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
FabG | - | - | - | - | |||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
FabG | BVU_RS10065 | enoyl-[acyl-carrier-protein] reductase | 10 | 15 | 20 | ||||
FabG | - | - | - | - | - | ||||
- | BVU_RS05130 | - | - | - | - | ||||
palmitate biosynthesis II | |||||||||
- | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
FabG | - | - | - | - | |||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
FabG | - | - | - | - | - | ||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS12875 | - | - | - | - | ||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS12875 | - | - | - | - | ||||
- | BVU_RS00045 | - | - | - | - | ||||
- | BVU_RS19410 | - | - | - | - | ||||
- | BVU_RS15255 | - | - | - | - | ||||
- | BVU_RS07510 | - | - | - | - | ||||
lipid IVA biosynthesis | |||||||||
- | BVU_RS00505 | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | 0 | 1.75 | 3.5 | ||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
- | BVU_RS00495 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | 1 | 2.25 | 0.75 | ||||
- | BVU_RS15065 | - | - | - | - | ||||
- | BVU_RS02680 | - | - | - | - | ||||
LpxB | BVU_RS09710 | - | - | - | - | ||||
LpxK | BVU_RS08150 | - | - | - | - | ||||
palmitoleate biosynthesis I | |||||||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
FabG | - | - | - | - | |||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS12875 | - | - | - | - | ||||
CDP-diacylglycerol biosynthesis I | |||||||||
- | BVU_RS02595 | - | - | - | - | ||||
- | - | 2.3.1.15; | - | - | - | ||||
- | BVU_RS11350 | - | - | - | - | ||||
- | BVU_RS09720 | - | - | - | - | ||||
phophatidylethanolamine biosynthesis I | |||||||||
- | BVU_RS09540 | - | - | - | - | ||||
- | BVU_RS09545 | phosphatidylserine decarboxylase | 0.75 | 0 | 0 | ||||
gondoate biosynthesis I (anaerobic) | |||||||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
FabG | - | - | - | - | |||||
stearate biosynthesis II | |||||||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
FabG | - | - | - | - | - | ||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS12875 | - | - | - | - | ||||
- | BVU_RS00045 | - | - | - | - | ||||
- | BVU_RS19410 | - | - | - | - | ||||
- | BVU_RS15255 | - | - | - | - | ||||
- | BVU_RS07510 | - | - | - | - | ||||
peptidoglycan biosynthesis I | |||||||||
MurA | - | - | - | - | - | ||||
- | BVU_RS11270 | - | - | - | - | ||||
- | BVU_RS07065 | - | - | - | - | ||||
Murl | - | - | - | - | - | ||||
MurD | - | - | - | - | - | ||||
- | BVU_RS07090 | - | - | - | - | ||||
- | BVU_RS02785 | D-alanine--D-alanine ligase | 0 | 0.75 | 0 | ||||
- | BVU_RS08970 | - | - | - | - | ||||
- | BVU_RS02365 | - | - | - | - | ||||
MraY | - | 2.7.8.13; | - | - | - | ||||
MurG | - | - | - | - | - |
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
Name | average 1/2ODmax | average ODmax | average ODstat | |||||||||||||||||||||
F23-30 | ||||||||||||||||||||||||
3,6-dimethyl-2,5-piperazinedione | 8265378.743 | 1.099494342E7 | 1.384175322E7 | |||||||||||||||||||||
(4-hydroxyphenyl)acetate | 0 | 1420991.782 | 4245243.065 | |||||||||||||||||||||
adenosine | 1.914616041E8 | 2.049224602E8 | 4.368890932E7 | |||||||||||||||||||||
AMP | 0 | 2.542298812E7 | 0 | |||||||||||||||||||||
alanine | 3.048153434E8 | 1023598628 | 4.595991406E8 | |||||||||||||||||||||
beta-Alanine | 1.076268625E7 | 1.472702677E7 | 1.153525451E7 | |||||||||||||||||||||
arabinose | 7.267107188E7 | 5.558992709E7 | 0 | |||||||||||||||||||||
asparagine | 9194929.216 | 1.065020677E8 | 4.63419194E7 | |||||||||||||||||||||
aspartate | 1336480732 | 2.561961123E9 | 1979001674 | |||||||||||||||||||||
N-acetyl-aspartate | 1.430374177E7 | 1.358601966E7 | 1.834177997E7 | |||||||||||||||||||||
4-hydroxybutanoate | 4341238.489 | 1.611925834E7 | 3.671945556E7 | |||||||||||||||||||||
citraconic acid | 3044486.818 | 2.246157863E7 | 3.030884869E7 | |||||||||||||||||||||
citrate | 2.312309536E7 | 137330468 | 8.736149751E7 | |||||||||||||||||||||
cytosine | 2.809813669E7 | 8.62736557E7 | 3.474310703E7 | |||||||||||||||||||||
erythritol | 5054322.738 | 1.778982275E7 | 1.638248006E7 | |||||||||||||||||||||
erythronic acid | 2.272937928E7 | 3.634991079E7 | 2.688512397E7 | |||||||||||||||||||||
erythrose | 2.787263181E7 | 5.955155986E7 | 6765894.403 | |||||||||||||||||||||
ethanolamine | 4.969040726E7 | 1.530971721E8 | 3.033750008E8 | |||||||||||||||||||||
ethanolaminephosphate | 2.546777747E7 | 2.813185905E7 | 9443448.536 | |||||||||||||||||||||
fructose | 1.850946281E8 | 1.257242206E8 | 0 | |||||||||||||||||||||
fructose-6-phosphate | 2.849009979E8 | 1.242458087E8 | 0 | |||||||||||||||||||||
fumarate | 2.404458386E8 | 5.637002336E8 | 6.521516803E8 | |||||||||||||||||||||
gluconic-acid | 2.568004851E8 | 1.181679281E8 | 9550974.311 | |||||||||||||||||||||
N-acetyl-glucosamine | 9768310.857 | 7213146.982 | 0 | |||||||||||||||||||||
glucose-6-phosphate | 4.067897086E8 | 1.828808347E8 | 0 | |||||||||||||||||||||
glutamate | 1340216244 | 6.658121568E9 | 1169145644 | |||||||||||||||||||||
glutamine | 2.056023878E8 | 4.190071894E8 | 2.240359272E8 | |||||||||||||||||||||
2-hydroxy-glutarate | 0 | 3.294905939E7 | 3.590857646E7 | |||||||||||||||||||||
glyceraldehyde | 7750331.635 | 2.298763835E7 | 1.335637885E7 | |||||||||||||||||||||
glycerate | 3.755884754E8 | 2.740662649E8 | 1.147235845E8 | |||||||||||||||||||||
2-phosphoglycerate | 0 | 4572553.126 | 0 | |||||||||||||||||||||
3-phosphoglycerate | 2.302342533E7 | 3.439023367E7 | 5846386.359 | |||||||||||||||||||||
glycerol | 4.661167241E7 | 6.570150232E7 | 6.856078056E7 | |||||||||||||||||||||
glycerol-3-phosphate | 1.041908498E7 | 1.718752623E8 | 1.772606967E8 | |||||||||||||||||||||
glycine | 6.209431422E8 | 2057670347 | 4.592510717E8 | |||||||||||||||||||||
glycolate | 1.405411682E7 | 2.059001147E7 | 1.808473331E7 | |||||||||||||||||||||
homoserine | 3.335082045E8 | 3.591716395E8 | 1.399917335E7 | |||||||||||||||||||||
N-2-oxocaproyl-homoserine lactone | 1.517760032E7 | 1.867238667E7 | 2.293308736E7 | |||||||||||||||||||||
N-2-oxooctanyol-DL-homoserine lactone | 0 | 0 | 11635.331750000001 | |||||||||||||||||||||
N-hexanoyl-homoserine lactone | 0 | 0 | 3740822.157 | |||||||||||||||||||||
homoserine-lactone | 1.809613475E7 | 1.95027542E7 | 2.570292888E7 | |||||||||||||||||||||
indole-3-acetaldehyde | 4383476.133 | 9365954 | 8288216.327 | |||||||||||||||||||||
indole-3-acetic acid | 0 | 4.691573849E7 | 7820113.983 | |||||||||||||||||||||
indole-3-lactate | 2186880.9 | 2630974.483 | 2594399.649 | |||||||||||||||||||||
myoinositol-2-phosphate | 1.775189535E7 | 2.390872067E7 | 5423904.234 | |||||||||||||||||||||
isoleucine | 1.374542193E8 | 3.199794331E8 | 1.217658453E8 | |||||||||||||||||||||
lactate | 4.274263196E8 | 8.536903754E8 | 9.656382479E8 | |||||||||||||||||||||
leucine | 5.790712841E8 | 1439535415 | 5.516541295E8 | |||||||||||||||||||||
maleamate | 4192487.17 | 5795711.583 | 5199904.97 | |||||||||||||||||||||
malate | 3.923954001E8 | 848322731 | 8.097098594E8 | |||||||||||||||||||||
2-isopropylmalic acid | 0 | 2.890969401E7 | 0 | |||||||||||||||||||||
2-methyl-malate | 6.080885221E7 | 1.079938159E8 | 4.788533355E7 | |||||||||||||||||||||
maltose | 1.326685341E8 | 133750122 | 1800785.279 | |||||||||||||||||||||
3,4-dihydroxy-mandelic acid | 8064132.172 | 8749595.731 | 1.079897095E7 | |||||||||||||||||||||
mannose | 4.487437963E8 | 252336952 | 1.393508464E7 | |||||||||||||||||||||
mannose-6-phosphate | 9.636200797E7 | 5.955190153E7 | 0 | |||||||||||||||||||||
methionine | 2034513.532 | 7.628279346E7 | 2.730399671E8 | |||||||||||||||||||||
Nicotinamide | 1.258987794E8 | 501164642 | 3.260022908E8 | |||||||||||||||||||||
nicotinic acid | 1.170017169E8 | 2.097302329E8 | 4.873414118E8 | |||||||||||||||||||||
phenylacetate | 2956646.363 | 4456889.651 | 9633215.127 | |||||||||||||||||||||
phenylalanine | 4.388546669E8 | 4.935537981E8 | 1.789371058E8 | |||||||||||||||||||||
phenylpyruvate | 2956401.783 | 3496928.418 | 2585520.354 | |||||||||||||||||||||
phosphoenolpyruvate | 7904362.188 | 1.402691499E7 | 5128633.264 | |||||||||||||||||||||
proline | 2.666568981E8 | 1511423646 | 1605577602 | |||||||||||||||||||||
2-amino-2-methyl-3-hydroxy-propanoate | 0 | 0 | 3.371460358E7 | |||||||||||||||||||||
putrescine | 0 | 1.005640698E7 | 1.171328886E7 | |||||||||||||||||||||
pyroglutamate | 2.540546723E9 | 4.104969694E9 | 3.284833895E9 | |||||||||||||||||||||
pyrophosphate | 0 | 9.711275107E7 | 0 | |||||||||||||||||||||
pyruvate | 5.764449038E7 | 1.054069723E8 | 4.67062416E7 | |||||||||||||||||||||
3-hydroxypyruvate | 2.813426578E7 | 3.874564615E7 | 4.709903788E7 | |||||||||||||||||||||
rhamnose | 5467552.28 | 7287586.92 | 0 | |||||||||||||||||||||
ribitol | 1000000000 | 1000000000 | 1000000000 | |||||||||||||||||||||
ribose | 694367707 | 5.328332125E8 | 4.384904984E8 | |||||||||||||||||||||
sedoheptulose-7-phosphate | 5.917838268E7 | 7.411755046E7 | 3993024.476 | |||||||||||||||||||||
serine | 1276441786 | 3.335129505E9 | 7.695622812E8 | |||||||||||||||||||||
cycloserine | 5.084750116E7 | 2.600599198E8 | 8.100619203E7 | |||||||||||||||||||||
N-acetyl-serine | 1.059336746E8 | 1.842237611E8 | 0 | |||||||||||||||||||||
3-dehydroshikimate | 2915323.859 | 3497219.62 | 1688258.611 | |||||||||||||||||||||
spermine | 3541465.43 | 4704480.265 | 3252199.329 | |||||||||||||||||||||
succinate | 2.657480135E9 | 4.484433305E9 | 5.284361116E9 | |||||||||||||||||||||
threonine | 1749332247 | 3.39003851E9 | 8.915184433E7 | |||||||||||||||||||||
threose | 3516783.548 | 4772561.199 | 5178304.532 | |||||||||||||||||||||
thymine | 589083380 | 6.178797086E8 | 2.814467823E8 | |||||||||||||||||||||
tryptophan | 2539672.872 | 4857143.382 | 6075927.328 | |||||||||||||||||||||
tyrosine | 9.550352555E7 | 1.368401247E8 | 7.821043712E7 | |||||||||||||||||||||
Unknown#1325.8-pin-mhe_007 | 2.746316097E7 | 3.831566682E7 | 3.146717502E7 | |||||||||||||||||||||
Unknown#1366.59-ppu-cja_010 | 1.028040972E8 | 1.286606871E8 | 3.83307523E7 | |||||||||||||||||||||
Unknown#1366.9-pin-mhe_011 | 0 | 0 | 5.100790519E7 | |||||||||||||||||||||
Unknown#1392.1-pin-mhe_012 | 0 | 0 | 8.392893011E7 | |||||||||||||||||||||
Uracil | 1702329403 | 2117311135 | 1641307740 | |||||||||||||||||||||
uridine | 1.474320764E7 | 8750848.652 | 0 | |||||||||||||||||||||
valine | 9.230785067E8 | 2.592221665E9 | 3.434458049E8 | |||||||||||||||||||||
xylitol | 2.239443265E7 | 0 | 0 | |||||||||||||||||||||
xylose | 1.166395907E7 | 1.05930369E7 | 3438379.921 | |||||||||||||||||||||
xylulose | 7.952552253E7 | 7.546167784E7 | 0 | |||||||||||||||||||||
xylulose-5-phosphate | 855942.3938 | 1592458.039 | 0 |
A
B
C
D
E
F
G
H
I
J
K
L
M
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
CoA | 1/2ODmax | ODmax | Odstat | |||||||||
CoenzymeA | 4912868 | 4693358 | 4415376 | 4029986 | 7999299 | 5436994 | 5471682 | 7341028 | 3722929 | 3119229 | 3701465 | 3818397 |
Acetyl-CoA | 58415094 | 60965398 | 63465947 | 60060491 | 45393976 | 31968886 | 35167580 | 45404304 | 44039022 | 39014335 | 41993660 | 38573573 |
Propenoyl-CoA | 2135768 | 2095049 | 1494035 | 1733782 | 337249 | 305428 | 301575 | 250793 | 223376 | 182202 | 258149 | 281767 |
Propanoyl-CoA | 5023647 | 5226892 | 4527377 | 4287440 | 1943418 | 2347079 | 1925851 | 2219608 | 7656282 | 5159891 | 6943862 | 6861228 |
Butanoyl-CoA | 4776301 | 5393140 | 4026315 | 5894770 | 20097739 | 17224231 | 12407080 | 17225271 | 14975138 | 14403527 | 11433604 | 11987066 |
Isobutanoyl-CoA | 4371966 | 4922817 | 4109338 | 4505565 | 15840788 | 14356691 | 11994533 | 13954118 | 8893864 | 8921627 | 6932793 | 9596689 |
(S)-2-Methylbutanoyl-CoA | 9949737 | 10129657 | 8731578 | 8150428 | 15483160 | 15620341 | 18433654 | 20650339 | 44850423 | 36776164 | 32778771 | 48635322 |
Isovaleryl-CoA | 4999600 | 4500310 | 3911202 | 3374602 | 25918635 | 19124343 | 20376423 | 23534793 | 55823717 | 35807178 | 53743495 | 46561363 |
Pentanoyl-CoA | 824233 | 868427 | 721083 | 755892 | 1771268 | 1402055 | 1438430 | 1969274 | 5972812 | 6884757 | 6884792 | 7280826 |
Malonyl-CoA | 177622 | 217814 | 177321 | 233897 | 732199 | 626023 | 648105 | 713322 | 871181 | 1022431 | 866700 | 887095 |
Methylmalonyl-CoA | 5123649 | 4195843 | 3916541 | 3763798 | 2875768 | 1995122 | 2569047 | 1923211 | 9979938 | 7408454 | 9096165 | 10471671 |
Succinyl-CoA | 21169812 | 17919356 | 22625778 | 14636368 | 19358027 | 22797158 | 14771345 | 17849154 | 31131938 | 26989307 | 33768034 | 33003571 |
Cyclohexa-1,5-dienecarbonyl-CoA | 1227884 | 1306538 | 925570 | 1214402 | 2339858 | 2739259 | 2490548 | 2597333 | 7394661 | 5144411 | 8170709 | 7629941 |
Cyclohex-1-ene-1-carboxyl-CoA | 221606 | 177166 | 155359 | 182230 | 1090067 | 856545 | 745147 | 857469 | 595135 | 746863 | 741959 | 566189 |
Methylsuccinyl-CoA | 430019 | 486722 | 340381 | 425041 | 396548 | 429238 | 333357 | 396585 | 485835 | 408756 | 350739 | 325660 |
C28H42N7O18P3S, similar to beta-(2-Furyl)propionyl-CoA | 1739194 | 1817161 | 1652515 | 1545113 | 1034390 | 1076613 | 1304001 | 1434617 | 605293 | 588617 | 823728 | 772815 |
C29H41N8O17P3S, exact mass based | 1956558 | 1959717 | 1510641 | 1436500 | 11001764 | 9401792 | 8029753 | 10627222 | 9750493 | 8677756 | 9005034 | 11810337 |
Phenylglyoxylyl-CoA | 81301 | 97570 | 84085 | 88380 | 883414 | 781849 | 817047 | 1053451 | 1346654 | 1350960 | 1368696 | 1943608 |
C29H43N8O17P3S, similar to N-Methylanthraniloyl-CoA | 3621909 | 4315683 | 2862026 | 3731336 | 3989842 | 4396538 | 3225252 | 3857268 | 1260793 | 990580 | 1201589 | 1246272 |
2,3-Dihydro-2,3-dihydroxybenzoyl-CoA | 610018 | 585519 | 641224 | 594254 | 1103750 | 1019841 | 903896 | 818590 | 473518 | 456067 | 498651 | 496308 |
A
B
C
D
E
F
G
H
I
J
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
Name | average 1/2ODmax | average ODmax | average ODstat | ||||||
(4-hydroxyphenyl)acetate | 0 | 0 | 9289.599772 | ||||||
1,6-anhydro-glucose | 13241.09054 | 21598.00354 | 5276.194721 | ||||||
1-O-methyl-alpha-glucopyranoside | 120221.2645 | 22595.36598 | 0 | ||||||
1-pyrroline-2-carboxylate | 11399.37926 | 12334.10381 | 12984.44374 | ||||||
2,4-dihydroxybutanoate | 23100.79123 | 17651.50354 | 17132.32856 | ||||||
2-amino-2-methylpropane-1,3-diol | 17292.52606 | 304397.5939 | 119436.4133 | ||||||
2-aminobutanoate | 13801.57337 | 64058.93625 | 18782.03809 | ||||||
2-aminoisobutanoate | 1846.437294 | 2522.104867 | 981.3441083 | ||||||
2-hydroxy-4-(methylthio)butanoate | 1062.234506 | 4951.057944 | 21931.4075 | ||||||
2-hydroxybutanoate | 0 | 21893.13429 | 20704.05855 | ||||||
2-hydroxy-glutarate | 9126.16993 | 93357.42608 | 124743.2806 | ||||||
2-hydroxyisocaproate | 0 | 6154.527856 | 7563.933773 | ||||||
2-isopropylmalic acid | 9318.271904 | 32305.2513 | 26006.79167 | ||||||
2-methyl-malate | 47322.16999 | 147337.0056 | 148228.6592 | ||||||
2-oxobutanoate | 1706.542423 | 5182.400179 | 1972.253655 | ||||||
2-oxoglutarate | 3825.152833 | 16351.44434 | 8373.118877 | ||||||
3,4-dihydroxybenzoate | 2154.914701 | 2729.888575 | 1818.869325 | ||||||
3-aminoisobutanoate | 51072.72964 | 53180.989 | 52068.8065 | ||||||
3-dehydroshikimate | 0 | 4274.800011 | 2519.69768 | ||||||
3-hydroxybenzoate | 1118.434005 | 1577.661383 | 1487.247318 | ||||||
3-hydroxyindole | 145483.7357 | 145062.1962 | 161133.4753 | ||||||
3-hydroxyisobutanoate | 1443.406185 | 2030.471884 | 4677.262604 | ||||||
3-hydroxyisovaleric acid | 0 | 0 | 13350.90751 | ||||||
4-hydroxybenzoate | 4347.213233 | 9265.616971 | 6439.181642 | ||||||
4-hydroxybutanoate | 8341.833798 | 57319.67342 | 130046.4036 | ||||||
4-hydroxyphenylacetonitrile | 1702.447467 | 1965.253942 | 2211.86605 | ||||||
4-oxobutanoate | 0 | 2897.024902 | 2276.482706 | ||||||
4-oxopentanoic acid | 12512.22651 | 14994.85326 | 15058.76188 | ||||||
6-deoxy-mannose | 115413.7129 | 40962.12844 | 1007.050309 | ||||||
alanine | 186437.366 | 675858.5938 | 377179.5159 | ||||||
aminomalonic acid | 0 | 32029.00758 | 30254.65806 | ||||||
arabinonate | 2480.46599 | 2885.912754 | 826.9863153 | ||||||
arabinono-1,4-lactone | 6041.827278 | 8305.663046 | 0 | ||||||
arabinose | 113599.8842 | 18742.39801 | 0 | ||||||
asparagine | 0 | 3974.843049 | 0 | ||||||
aspartate | 0 | 22641.73173 | 0 | ||||||
benzene-1,2,4-triol | 2685.662953 | 6543.742449 | 9444.725211 | ||||||
benzoate | 164377.0865 | 214497.77 | 234102.4865 | ||||||
beta-Alanine | 111004.0078 | 17010.72479 | 25348.08442 | ||||||
butylamine | 2583.330356 | 7800.087292 | 3031.189135 | ||||||
citraconic acid | 13291.46357 | 20733.4688 | 14481.70315 | ||||||
citrate | 19032.68054 | 31779.28151 | 26073.8232 | ||||||
cysteine | 0 | 8649.927068 | 7935.665552 | ||||||
diethylene glycol | 114075.8286 | 126325.7524 | 147065.7096 | ||||||
erythritol | 6432.784773 | 20202.39974 | 35682.00093 | ||||||
erythronic acid | 17425.01564 | 52475.53757 | 36736.3588 | ||||||
erythronic acid-1,4-lactone | 5212.858485 | 16058.7725 | 12997.351 | ||||||
erythrose | 21921.41473 | 78241.62423 | 44883.12959 | ||||||
ethanolamine | 30960.5817 | 139357.8415 | 274287.2696 | ||||||
fructose | 518667.171 | 284286.21 | 3647.387377 | ||||||
fumarate | 74158.3667 | 89377.55297 | 77311.96085 | ||||||
galactose | 287798.7167 | 136190.6944 | 0 | ||||||
gluconic-acid | 53450.97373 | 24254.20329 | 5112.018837 | ||||||
glucose | 1401777.391 | 680722.0745 | 148902.9758 | ||||||
glutamine | 96326.14762 | 126582.3145 | 142426.8809 | ||||||
glyceraldehyde | 9937.889679 | 26075.91615 | 15092.50598 | ||||||
glycerate | 38642.76494 | 138259.5499 | 57055.02788 | ||||||
glycerol-3-phosphate | 0 | 2377.851981 | 1843.756899 | ||||||
glycine | 25679.78888 | 117986.9177 | 76740.94961 | ||||||
glycolate | 7575.441393 | 14218.2835 | 10748.57535 | ||||||
hydrocinnamic acid | 18962.46781 | 28176.20618 | 28493.75941 | ||||||
hydroquinone | 5964.373506 | 1497.075992 | 1384.895708 | ||||||
hydroxylamine | 42642.97452 | 54994.37608 | 55226.30733 | ||||||
indole-3-lactate | 0 | 510.5191295 | 568.7783619 | ||||||
isocaproate | 0 | 5383.709628 | 3284.426331 | ||||||
isoleucine | 16528.71098 | 38714.57974 | 18782.29433 | ||||||
isomaltose* | 285.1419036 | 630.276348 | 0 | ||||||
lactate | 782860.4662 | 994265.4398 | 1215024.733 | ||||||
laminaribiose* | 3458.983938 | 8499.335859 | 606.5945435 | ||||||
leucine | 0 | 54179.53124 | 24567.30548 | ||||||
malate | 415601.0876 | 965945.4366 | 945762.7512 | ||||||
maleate | 7494.438311 | 42037.55822 | 21269.74702 | ||||||
malonamide | 313710.7895 | 438380.1751 | 386739.6702 | ||||||
malonic acid | 0 | 1656.04694 | 1719.925459 | ||||||
mannonic acid-1,4-lactone | 0 | 492.9970468 | 0 | ||||||
mannose | 159580.4492 | 47561.44195 | 0 | ||||||
mannosylglycerate | 8411.381146 | 0 | 0 | ||||||
methyl 3,6-anhydro-alpha-galactopyranoside | 3513.663272 | 4304.23687 | 3661.989529 | ||||||
myo-inositol | 0 | 850.0713329 | 0 | ||||||
N-acetyl-galactosamine | 3671.443836 | 629.3391122 | 0 | ||||||
N-acetyl-glucosamine | 4287.622265 | 1006.047384 | 0 | ||||||
N-acetyl-phenylalanine | 0 | 0 | 972.2001417 | ||||||
nicotinic acid | 21321.99894 | 26841.36041 | 121129.9429 | ||||||
oxalate | 9393.353043 | 11625.98082 | 10514.72433 | ||||||
phenylpyruvate | 2495.374715 | 4905.818014 | 4074.834533 | ||||||
proline | 54337.72263 | 963555.2114 | 789359.9671 | ||||||
propane-1,2-diol | 12926.23761 | 15962.30631 | 31277.14495 | ||||||
propane-1,3-diol | 105286.998 | 53200.53431 | 0 | ||||||
putrescine | 8087.277356 | 0 | 0 | ||||||
pyridoxal | 0 | 1363.784526 | 519.1638029 | ||||||
pyroglutamate | 51637.52579 | 282849.0538 | 157454.2446 | ||||||
pyrrole-2-carboxylate | 6045.629836 | 12082.07825 | 8520.154384 | ||||||
pyruvate | 126135.6008 | 41206.06283 | 13904.45386 | ||||||
quinate | 1138.771335 | 1889.73512 | 1362.196213 | ||||||
ribonate | 3637.443671 | 6401.706855 | 4352.95201 | ||||||
ribose | 35320.99403 | 54534.9951 | 38510.98767 | ||||||
shikimic acid | 0 | 130438.5169 | 74191.88895 | ||||||
sorbitol | 7360.274366 | 0 | 0 | ||||||
succinate | 2298.598083 | 2452304.88 | 2784346.948 |