Selected Cell
Cell:
Value:
Outline
1P_vulgatus_ATCC_8482
2Proteomic_data
3Amino_acids
4Nucleotide
5Fatty_acdis_cell_wall
6Metabolites
7Metabolome_CoA
8Exo_Metabolome
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Tab | Name | Contents | |||||||
1 | 1P_vulgatus_ATCC_8482 | Genome of P. vulgatus ATCC 8482 | |||||||
2 | 2Proteomics_data | Identified proteins with peptide counts | |||||||
3 | 3Amino_acids | BioCyc-predicted biosynthesis of amino acids including identified proteins | |||||||
4 | 4Nucleotide | BioCyc-predicted biosynthesis of nucleotides including identified proteins | |||||||
5 | 5Fatty_acdis_cell_wall | BioCyc-predicted biosynthesis of fatty acids and cell wall including identified proteins | |||||||
6 | 6Metabolites | Metabolites of the intracellular metabolome | |||||||
7 | 7Metabolome_CoA | CoAs of the metabolome | |||||||
8 | 8Exo_Metabolome | Metabolites of the extracellular metabolome | |||||||
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BVU_RS03125 | BVU_0616 | 883622 | 884743 | 373 | c | BVU_RS03125 | DUF1735 and LamG domain-containing protein | ||
BVU_RS03130 | BVU_0617 | 884761 | 885819 | 352 | c | BVU_RS03130 | glycoside hydrolase family 18 | ||
BVU_RS03135 | BVU_0618 | 885851 | 887392 | 513 | c | BVU_RS03135 | SusD/RagB family nutrient-binding outer membrane lipoprotein | ||
BVU_RS03140 | BVU_0619 | 887406 | 890507 | 1033 | c | BVU_RS03140 | SusC/RagA family TonB-linked outer membrane protein | ||
BVU_RS03145 | BVU_0620 | 891106 | 893121 | 671 | c | BVU_RS03145 | glycoside hydrolase family 97 protein | ||
BVU_RS03150 | BVU_0621 | 893309 | 894154 | 281 | c | BVU_RS03150 | endonuclease/exonuclease/phosphatase family protein | ||
BVU_RS03155 | BVU_0622 | 894198 | 895967 | 589 | c | BVU_RS03155 | SusD/RagB family nutrient-binding outer membrane lipoprotein | ||
BVU_RS03160 | BVU_0623 | 895991 | 899392 | 1133 | c | BVU_RS03160 | SusC/RagA family TonB-linked outer membrane protein | ||
BVU_RS03170 | BVU_0624 | 899681 | 901993 | 770 | c | BVU_RS03170 | 3.2.1.- | GH92 family glycosyl hydrolase | |
BVU_RS03175 | BVU_0625 | 902023 | 904305 | 760 | c | BVU_RS03175 | 3.2.1.- | GH92 family glycosyl hydrolase | |
BVU_RS03180 | BVU_0626 | 904323 | 905315 | 330 | c | BVU_RS03180 | FecR domain-containing protein | ||
BVU_RS03185 | BVU_0627 | 905344 | 905919 | 191 | c | BVU_RS03185 | RNA polymerase sigma-70 factor | ||
BVU_RS03190 | BVU_0628 | 906124 | 908346 | 740 | c | BVU_RS03190 | 3.2.1.- | GH92 family glycosyl hydrolase | |
BVU_RS03195 | BVU_0629 | 908440 | 909135 | 231 | c | BVU_RS03195 | hypothetical protein | ||
BVU_RS03200 | BVU_0630 | 909295 | 909573 | 92 | BVU_RS03200 | hypothetical protein | |||
BVU_RS03205 | BVU_0631 | 909582 | 910397 | 271 | BVU_RS03205 | helix-turn-helix domain-containing protein | |||
BVU_RS03210 | BVU_0632 | 910471 | 910878 | 135 | BVU_RS03210 | pyridoxamine 5'-phosphate oxidase family protein | |||
BVU_RS03215 | BVU_0633 | 911107 | 911415 | 102 | BVU_RS03215 | ATP-dependent Clp protease adaptor ClpS | |||
BVU_RS03220 | BVU_0634 | 911433 | 913661 | 742 | BVU_RS03220 | AAA family ATPase | |||
BVU_RS03225 | BVU_0635 | 913757 | 914410 | 217 | aat | 2.3.2.6 | leucyl/phenylalanyl-tRNA--protein transferase | ||
BVU_RS03230 | BVU_0636 | 914551 | 915390 | 279 | BVU_RS03230 | hypothetical protein | |||
BVU_RS03235 | BVU_0637 | 915605 | 916897 | 430 | BVU_RS03235 | MATE family efflux transporter | |||
BVU_RS03240 | BVU_0638 | 917012 | 917596 | 194 | BVU_RS03240 | hypothetical protein | |||
BVU_RS03245 | BVU_0639 | 917614 | 918384 | 256 | c | BVU_RS03245 | LuxR C-terminal-related transcriptional regulator | ||
BVU_RS03250 | BVU_0640 | 918435 | 920042 | 535 | c | BVU_RS03250 | 3.2.1.22 | alpha-galactosidase | |
BVU_RS03270 | BVU_0644 | 921126 | 922361 | 411 | BVU_RS03270 | site-specific integrase | |||
BVU_RS03275 | BVU_0645 | 922442 | 922636 | 64 | c | BVU_RS03275 | hypothetical protein | ||
BVU_RS03280 | 922660 | 922935 | 91 | BVU_RS03280 | hypothetical protein | ||||
BVU_RS03285 | BVU_0646 | 922956 | 924083 | 375 | BVU_RS03285 | hypothetical protein | |||
BVU_RS03290 | BVU_0647 | 924087 | 924980 | 297 | BVU_RS03290 | hypothetical protein | |||
BVU_RS03295 | BVU_0648 | 924987 | 925421 | 144 | BVU_RS03295 | hypothetical protein | |||
BVU_RS03300 | BVU_0649 | 925418 | 926398 | 326 | BVU_RS03300 | hypothetical protein | |||
BVU_RS03305 | BVU_0650 | 926441 | 926920 | 159 | BVU_RS03305 | hypothetical protein | |||
BVU_RS03310 | BVU_0651 | 927015 | 927305 | 96 | BVU_RS03310 | DUF4120 family protein | |||
BVU_RS03320 | 927587 | 927865 | 92 | BVU_RS03320 | hypothetical protein | ||||
BVU_RS03325 | BVU_0653 | 927852 | 928658 | 268 | BVU_RS03325 | DUF4121 family protein | |||
BVU_RS03330 | BVU_0654 | 928660 | 929418 | 252 | BVU_RS03330 | N-6 DNA methylase | |||
BVU_RS03335 | BVU_0655 | 929431 | 930666 | 411 | BVU_RS03335 | hypothetical protein | |||
BVU_RS03340 | BVU_0656 | 930679 | 931560 | 293 | BVU_RS03340 | hypothetical protein | |||
BVU_RS03345 | BVU_0657 | 931587 | 932741 | 384 | BVU_RS03345 | hypothetical protein | |||
BVU_RS03350 | BVU_0658 | 932861 | 933715 | 284 | BVU_RS03350 | hypothetical protein | |||
BVU_RS03355 | BVU_0659 | 934077 | 934556 | 159 | c | BVU_RS03355 | glycoside hydrolase | ||
BVU_RS03360 | BVU_0660 | 934553 | 935011 | 152 | c | BVU_RS03360 | DUF3872 domain-containing protein | ||
BVU_RS03365 | BVU_0661 | 935032 | 935619 | 195 | c | BVU_RS03365 | conjugal transfer protein TraO | ||
BVU_RS03370 | BVU_0662 | 935616 | 936530 | 304 | c | traN | conjugative transposon protein TraN | ||
BVU_RS03375 | BVU_0663 | 936581 | 937888 | 435 | c | traM | conjugative transposon protein TraM | ||
BVU_RS21230 | BVU_0664 | 937839 | 938141 | 100 | c | BVU_RS21230 | hypothetical protein | ||
BVU_RS03380 | BVU_0665 | 938138 | 938761 | 207 | c | traK | conjugative transposon protein TraK | ||
BVU_RS03385 | BVU_0666 | 938884 | 939897 | 337 | c | traJ | conjugative transposon protein TraJ | ||
BVU_RS03390 | BVU_0667 | 939900 | 940529 | 209 | c | BVU_RS03390 | DUF4141 domain-containing protein | ||
BVU_RS03395 | BVU_0668 | 940526 | 940882 | 118 | c | BVU_RS03395 | DUF3876 domain-containing protein | ||
BVU_RS03400 | BVU_0669 | 940891 | 943416 | 841 | c | BVU_RS03400 | TraG family conjugative transposon ATPase | ||
BVU_RS03405 | BVU_0670 | 943413 | 943742 | 109 | c | BVU_RS03405 | DUF4133 domain-containing protein | ||
BVU_RS03410 | 943748 | 944128 | 126 | c | BVU_RS03410 | DUF4134 domain-containing protein | |||
BVU_RS03415 | BVU_0671 | 944349 | 945782 | 477 | BVU_RS03415 | DUF262 domain-containing protein | |||
BVU_RS03420 | BVU_0672 | 945775 | 946758 | 327 | BVU_RS03420 | DUF3696 domain-containing protein | |||
BVU_RS03425 | BVU_0673 | 946755 | 947660 | 301 | BVU_RS03425 | hypothetical protein | |||
BVU_RS03430 | BVU_0674 | 947775 | 948440 | 221 | c | BVU_RS03430 | DUF4122 domain-containing protein | ||
BVU_RS03435 | BVU_0675 | 948428 | 948877 | 149 | c | BVU_RS03435 | DUF3408 domain-containing protein | ||
BVU_RS03440 | BVU_0676 | 948886 | 949680 | 264 | c | BVU_RS03440 | AAA family ATPase | ||
BVU_RS03450 | BVU_0677 | 950405 | 950827 | 140 | BVU_RS03450 | hypothetical protein | |||
BVU_RS03455 | BVU_0678 | 950812 | 952059 | 415 | BVU_RS03455 | relaxase/mobilization nuclease domain-containing protein | |||
BVU_RS03460 | BVU_0679 | 952096 | 954132 | 678 | BVU_RS03460 | YWFCY domain-containing protein | |||
BVU_RS03465 | BVU_0680 | 954354 | 954848 | 164 | BVU_RS03465 | hypothetical protein | |||
BVU_RS03470 | BVU_0681 | 954854 | 956158 | 434 | c | BVU_RS03470 | sigma-54 dependent transcriptional regulator | ||
BVU_RS03475 | BVU_0682 | 956103 | 958490 | 795 | c | BVU_RS03475 | hybrid sensor histidine kinase/response regulator | ||
BVU_RS03480 | BVU_0683 | 958808 | 961069 | 753 | c | BVU_RS03480 | Helicase associated domain protein | ||
BVU_RS03485 | BVU_0684 | 961094 | 961402 | 102 | c | BVU_RS03485 | Arm DNA-binding domain-containing protein | ||
BVU_RS22490 | 961839 | 962009 | 56 | c | BVU_RS22490 | hypothetical protein | |||
BVU_RS03495 | BVU_0686 | 962298 | 963458 | 386 | c | wecB | 5.1.3.14 | UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) | |
BVU_RS03500 | BVU_0687 | 963470 | 964168 | 232 | c | BVU_RS03500 | WecB/TagA/CpsF family glycosyltransferase | ||
BVU_RS03505 | BVU_0688 | 964181 | 965374 | 397 | c | BVU_RS03505 | glycoside hydrolase family 88 protein | ||
BVU_RS03510 | 965381 | 965807 | 141.33333333333334 | c | BVU_RS03510 | serine acetyltransferase | |||
BVU_RS03515 | BVU_0689 | 965850 | 966346 | 164.66666666666666 | c | BVU_RS03515 | serine acetyltransferase | ||
BVU_RS03520 | BVU_0690 | 966351 | 966689 | 112 | c | BVU_RS03520 | acyltransferase | ||
BVU_RS03525 | BVU_0691 | 966759 | 967940 | 393 | c | BVU_RS03525 | 2.4.-.- | glycosyltransferase | |
BVU_RS03530 | BVU_0692 | 967972 | 969153 | 393 | c | wecB | 5.1.3.14 | UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) | |
BVU_RS03535 | BVU_0693 | 969160 | 969558 | 132 | c | BVU_RS03535 | WbuC family cupin fold metalloprotein | ||
BVU_RS03540 | BVU_0694 | 969565 | 970719 | 384 | c | BVU_RS03540 | capsular polysaccharide biosynthesis protein CapF | ||
BVU_RS03545 | BVU_0695 | 970894 | 971967 | 357 | c | BVU_RS03545 | polysaccharide biosynthesis protein | ||
BVU_RS03550 | BVU_0696 | 971973 | 973142 | 389 | c | BVU_RS03550 | 2.4.-.- | glycosyltransferase | |
BVU_RS03555 | BVU_0697 | 973149 | 974351 | 400 | c | BVU_RS03555 | hypothetical protein | ||
BVU_RS03560 | BVU_0698 | 974339 | 975682 | 447 | c | BVU_RS03560 | oligosaccharide flippase family protein | ||
BVU_RS03570 | BVU_0700 | 976501 | 977706 | 401 | c | wecC | 1.1.1.336 | UDP-N-acetyl-D-mannosamine dehydrogenase | |
BVU_RS03575 | BVU_0701 | 977788 | 978492 | 234 | c | BVU_RS03575 | hypothetical protein | ||
BVU_RS03580 | BVU_0702 | 978506 | 980884 | 792 | c | BVU_RS03580 | polysaccharide biosynthesis tyrosine autokinase | ||
BVU_RS03585 | BVU_0703 | 980926 | 981720 | 264 | c | BVU_RS03585 | polysaccharide export protein | ||
BVU_RS03590 | BVU_0704 | 981745 | 982851 | 368 | c | BVU_RS03590 | undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase | ||
BVU_RS03595 | BVU_0705 | 982876 | 983424 | 182 | c | BVU_RS03595 | UpxY family transcription antiterminator | ||
BVU_RS03600 | BVU_0706 | 983921 | 985144 | 407 | c | BVU_RS03600 | site-specific integrase | ||
BVU_RS03605 | BVU_0707 | 985997 | 987832 | 611 | BVU_RS03605 | DUF3945 domain-containing protein | |||
BVU_RS03610 | BVU_0708 | 987887 | 988162 | 91 | BVU_RS03610 | DUF4099 domain-containing protein | |||
BVU_RS03615 | BVU_0709 | 988236 | 989996 | 586 | BVU_RS03615 | 5.6.2.- | DNA topoisomerase | ||
BVU_RS21265 | 990308 | 990520 | 70 | BVU_RS21265 | hypothetical protein | ||||
BVU_RS03625 | BVU_0711 | 990770 | 991840 | 356 | BVU_RS03625 | PRTRC system protein E | |||
BVU_RS03630 | BVU_0712 | 991860 | 992081 | 73 | BVU_RS03630 | PRTRC system protein C | |||
BVU_RS03635 | BVU_0713 | 992124 | 993251 | 375 | BVU_RS03635 | hypothetical protein | |||
BVU_RS03640 | BVU_0714 | 993284 | 993985 | 233 | BVU_RS03640 | prokaryotic E2 ligase family D protein | |||
BVU_RS03645 | BVU_0715 | 993982 | 994773 | 263 | BVU_RS03645 | PRTRC system ThiF family protein | |||
BVU_RS03650 | BVU_0716 | 994796 | 995518 | 240 | c | BVU_RS03650 | NYN domain-containing protein |
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Average [peptide count] | |||||||||
Accession No. | Locustag old | Locustag | Genome predicted funtion | 1/2ODmax | ODmax | ODstat | |||
ABR37733.1 | BVU_0003 | BVU_RS00015 | putative ribonucleoside reductase [Phocaeicola vulgatus ATCC 8482] | 8 | 5.75 | 2 | |||
ABR37734.1 | BVU_0004 | BVU_RS00020 | putative exported protein [Phocaeicola vulgatus ATCC 8482] | 2 | 0 | 0 | |||
ABR37741.1 | BVU_0011 | BVU_RS00060 | putative 50S ribosomal protein L9 [Phocaeicola vulgatus ATCC 8482] | 14 | 13.75 | 13 | |||
ABR37742.1 | BVU_0012 | BVU_RS00065 | 30S ribosomal protein S18 [Phocaeicola vulgatus ATCC 8482] | 71 | 56.25 | 69 | |||
ABR37743.1 | BVU_0013 | BVU_RS00070 | 30S ribosomal protein S6 [Phocaeicola vulgatus ATCC 8482] | 10.5 | 16.25 | 16.75 | |||
ABR37745.1 | BVU_0015 | BVU_RS00085 | two-component system response regulator [Phocaeicola vulgatus ATCC 8482] | 24.75 | 59.75 | 69.75 | |||
ABR37746.1 | BVU_0016 | BVU_RS00090 | two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482] | 5.25 | 1.25 | 2.25 | |||
ABR37747.1 | BVU_0017 | BVU_RS00095 | putative elongation factor G [Phocaeicola vulgatus ATCC 8482] | 0 | 36 | 17.75 | |||
ABR37776.1 | BVU_0046 | BVU_RS00240 | phosphoglucomutase/phosphomannomutase [Phocaeicola vulgatus ATCC 8482] | 1.75 | 5.5 | 5.25 | |||
ABR37803.1 | BVU_0073 | BVU_RS00375 | DnaJ domain protein [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 1 | |||
ABR37808.1 | BVU_0078 | BVU_RS00400 | putative phosphoribosylformylglycinamidine synthase [Phocaeicola vulgatus ATCC 8482] | 16.5 | 9.75 | 1 | |||
ABR37812.1 | BVU_0082 | BVU_RS00420 | putative secreted protein [Phocaeicola vulgatus ATCC 8482] | 2.75 | 1.25 | 0 | |||
ABR37814.1 | BVU_0084 | BVU_RS00430 | putative endonuclease/exonuclease/phosphatase family protein [Phocaeicola vulgatus ATCC 8482] | 0.75 | 0 | 3 | |||
ABR37815.1 | BVU_0085 | BVU_RS00435 | glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482] | 4.75 | 6.5 | 8.5 | |||
ABR37816.1 | BVU_0086 | BVU_RS00440 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 14.75 | 18 | 9.75 | |||
ABR37822.1 | BVU_0092 | BVU_RS00475 | putative phosphoribosylformylglycinamidine cyclo-ligase [Phocaeicola vulgatus ATCC 8482] | 0.75 | 1.75 | 0.5 | |||
ABR37825.1 | BVU_0095 | BVU_RS00485 | orotidine 5'-phosphate decarboxylase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1.5 | |||
ABR37827.1 | BVU_0097 | BVU_RS00495 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Phocaeicola vulgatus ATCC 8482] | 1 | 2.25 | 0.75 | |||
ABR37828.1 | BVU_0098 | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Phocaeicola vulgatus ATCC 8482] | 32.75 | 15.25 | 8.25 | |||
ABR37829.1 | BVU_0099 | BVU_RS00505 | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482] | 0 | 1.75 | 3.5 | |||
ABR37853.1 | BVU_0123 | BVU_RS00625 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 3.25 | 4.75 | |||
ABR37871.1 | BVU_0143 | BVU_RS00725 | GTP cyclohydrolase II [Phocaeicola vulgatus ATCC 8482] | 3.25 | 3 | 3.5 | |||
ABR37872.1 | BVU_0144 | BVU_RS00730 | aspartate aminotransferase [Phocaeicola vulgatus ATCC 8482] | 20.5 | 20.5 | 20.25 | |||
ABR37874.1 | BVU_0146 | BVU_RS00745 | 5'-nucleotidase precursor [Phocaeicola vulgatus ATCC 8482] | 1 | 0.5 | 0 | |||
ABR37875.1 | BVU_0147 | BVU_RS00750 | putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase [Phocaeicola vulgatus ATCC 8482] | 3 | 2 | 1.5 | |||
ABR37876.1 | BVU_0148 | BVU_RS00755 | 50S ribosomal protein L19 [Phocaeicola vulgatus ATCC 8482] | 16.5 | 24 | 29 | |||
ABR37885.1 | BVU_0157 | BVU_RS00815 | conserved protein, with a weak D-galactarate dehydratase/altronate hydrolase domain [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 0 | |||
ABR37897.1 | BVU_0169 | BVU_RS00870 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 7 | 0 | 6.25 | |||
ABR37919.1 | BVU_0191 | BVU_RS00975 | ROK family transcriptional repressor, with glucokinase domain [Phocaeicola vulgatus ATCC 8482] | 8.25 | 12.5 | 15.75 | |||
ABR37923.1 | BVU_0195 | BVU_RS00995 | membrane fusion efflux protein [Phocaeicola vulgatus ATCC 8482] | 14.5 | 10 | 12.25 | |||
ABR37924.1 | BVU_0196 | BVU_RS01000 | putative outer membrane efflux protein [Phocaeicola vulgatus ATCC 8482] | 1.75 | 2.5 | 2 | |||
ABR37926.1 | BVU_0198 | BVU_RS01010 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 1.75 | 4.25 | |||
ABR37928.1 | BVU_0200 | BVU_RS01020 | putative alcohol dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1 | |||
ABR37929.1 | BVU_0201 | BVU_RS01025 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 4.5 | 4.5 | |||
ABR37933.1 | BVU_0205 | BVU_RS01045 | aspartate-semialdehyde dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 22.25 | 32.75 | 31.25 | |||
ABR37934.1 | BVU_0206 | BVU_RS01050 | putative FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [Phocaeicola vulgatus ATCC 8482] | 8.25 | 5 | 5.5 | |||
ABR37935.1 | BVU_0207 | BVU_RS01055 | glycyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482] | 4 | 5.75 | 2 | |||
ABR37960.1 | BVU_0238 | BVU_RS01205 | putative membrane fusion protein transporter [Phocaeicola vulgatus ATCC 8482] | 10.75 | 7.25 | 6.75 | |||
ABR37963.1 | BVU_0241 | BVU_RS01220 | acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482] | 2 | 2.75 | 1.5 | |||
ABR37964.1 | BVU_0242 | BVU_RS01225 | outer membrane protein oprM precursor [Phocaeicola vulgatus ATCC 8482] | 35.25 | 11.5 | 8 | |||
ABR37965.1 | BVU_0243 | BVU_RS01230 | AcrB/AcrD family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482] | 7 | 1 | 1.75 | |||
ABR37966.1 | BVU_0244 | BVU_RS01235 | AcrA/AcrE family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482] | 50 | 24 | 20 | |||
ABR37967.1 | BVU_0245 | BVU_RS01240 | NADP-dependent malate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 17.5 | 23.25 | 11.75 | |||
ABR37968.1 | BVU_0246 | BVU_RS01250 | NADP-specific glutamate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 76.5 | 66.25 | 43 | |||
ABR37969.1 | BVU_0247 | BVU_RS01255 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 23.25 | 16.5 | 9.75 | |||
ABR37970.1 | BVU_0248 | BVU_RS01260 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 23.25 | 13 | 15.25 | |||
ABR37971.1 | BVU_0249 | BVU_RS01265 | hypothetical protein BVU_0249 [Phocaeicola vulgatus ATCC 8482] | 58.5 | 38.25 | 62.75 | |||
ABR37973.1 | BVU_0251 | BVU_RS01275 | NAD-specific glutamate dehydrogenase 1 [Phocaeicola vulgatus ATCC 8482] | 0 | 10.25 | 11.75 | |||
ABR37974.1 | BVU_0252 | BVU_RS01280 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1 | 1 | 0 | |||
ABR37978.1 | BVU_0256 | BVU_RS01300 | malate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 56.5 | 72 | 86 | |||
ABR37979.1 | BVU_0257 | BVU_RS01305 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 22 | 10.75 | 15.25 | |||
ABR37983.1 | BVU_0263 | BVU_RS01330 | lipoprotein [Phocaeicola vulgatus ATCC 8482] | 64 | 61.5 | 65.25 | |||
ABR37986.1 | BVU_0266 | BVU_RS01345 | Mrp/Nbp35 family ATP-binding protein [Phocaeicola vulgatus ATCC 8482] | 3.75 | 4.75 | 7.75 | |||
ABR37988.1 | BVU_0268 | BVU_RS01355 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 8.75 | 2.25 | 6 | |||
ABR37989.1 | BVU_0269 | BVU_RS01360 | branched-chain amino acid aminotransferase [Phocaeicola vulgatus ATCC 8482] | 6.75 | 23.75 | 17.5 | |||
ABR38002.1 | BVU_0282 | BVU_RS01425 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1 | 1.25 | 1.75 | |||
ABR38018.1 | BVU_0298 | BVU_RS01520 | dTDP-glucose 4,6-dehydratase [Phocaeicola vulgatus ATCC 8482] | 2 | 6.5 | 6.5 | |||
ABR38029.1 | BVU_0309 | BVU_RS01575 | putative methylmalonyl-CoA mutase small subunit [Phocaeicola vulgatus ATCC 8482] | 11.5 | 7.75 | 5 | |||
ABR38030.1 | BVU_0310 | BVU_RS01580 | methylmalonyl-CoA mutase large subunit [Phocaeicola vulgatus ATCC 8482] | 16.25 | 19 | 6.5 | |||
ABR38035.1 | BVU_0315 | BVU_RS01605 | putative two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482] | 1.5 | 1.75 | 1 | |||
ABR38036.1 | BVU_0316 | BVU_RS01610 | putative membrane transport protein [Phocaeicola vulgatus ATCC 8482] | 2.5 | 0 | 0.75 | |||
ABR38037.1 | BVU_0317 | BVU_RS01615 | putative cation efflux pump [Phocaeicola vulgatus ATCC 8482] | 0 | 0.75 | 0 | |||
ABR38038.1 | BVU_0318 | BVU_RS01620 | putative cation efflux pump [Phocaeicola vulgatus ATCC 8482] | 1.5 | 5.25 | 3.5 | |||
ABR38039.1 | BVU_0319 | BVU_RS01625 | outer membrane efflux protein oprM precursor [Phocaeicola vulgatus ATCC 8482] | 2 | 3.25 | 8.5 | |||
ABR38040.1 | BVU_0320 | BVU_RS01630 | hypothetical protein BVU_0320 [Phocaeicola vulgatus ATCC 8482] | 0 | 2.75 | 3.25 | |||
ABR38045.1 | BVU_0325 | BVU_RS01655 | electron transfer flavoprotein beta-subunit [Phocaeicola vulgatus ATCC 8482] | 7 | 15.75 | 14.5 | |||
ABR38046.1 | BVU_0326 | BVU_RS01660 | electron transfer flavoprotein alpha-subunit [Phocaeicola vulgatus ATCC 8482] | 1.25 | 1.75 | 0 | |||
ABR38048.1 | BVU_0328 | BVU_RS01670 | acyl-CoA dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 8.25 | 7 | 3.5 | |||
ABR38049.1 | BVU_0329 | BVU_RS01675 | putative histidine decarboxylase [Phocaeicola vulgatus ATCC 8482] | 0 | 4.75 | 6 | |||
ABR38050.1 | BVU_0330 | BVU_RS01680 | putative phenylacetic acid degradation protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0.75 | |||
ABR38051.1 | BVU_0331 | BVU_RS01685 | putative DNA mismatch repair protein [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 1.25 | |||
ABR38060.1 | BVU_0340 | BVU_RS01735 | putative oxidoreductase [Phocaeicola vulgatus ATCC 8482] | 8.5 | 8.25 | 6 | |||
ABR38064.1 | BVU_0345 | BVU_RS01760 | 60 kDa chaperonin [Phocaeicola vulgatus ATCC 8482] | 46.25 | 82.75 | 73 | |||
ABR38065.1 | BVU_0346 | BVU_RS01765 | 10 kDa chaperonin [Phocaeicola vulgatus ATCC 8482] | 21.75 | 31.5 | 36.75 | |||
ABR38070.1 | BVU_0351 | BVU_RS01790 | histidyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482] | 5.75 | 7 | 7 | |||
ABR38080.1 | BVU_0361 | BVU_RS01845 | 3,4-dihydroxy-2-butanone 4-phosphate synthase [Phocaeicola vulgatus ATCC 8482] | 3.5 | 2.5 | 2.25 | |||
ABR38092.1 | BVU_0373 | BVU_RS01905 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 9 | 14 | 15.75 | |||
ABR38093.1 | BVU_0374 | BVU_RS01910 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 3.25 | 2 | 4 | |||
ABR38094.1 | BVU_0375 | BVU_RS01915 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 2.25 | 1.25 | 2 | |||
ABR38096.1 | BVU_0377 | BVU_RS01920 | peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Phocaeicola vulgatus ATCC 8482] | 0 | 2 | 0 | |||
ABR38099.1 | BVU_0380 | BVU_RS01935 | two-component system sensor histidine kinase, with response regulator receiver domain [Phocaeicola vulgatus ATCC 8482] | 2.75 | 0 | 0 | |||
ABR38103.1 | BVU_0384 | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase [Phocaeicola vulgatus ATCC 8482] | 20 | 23.75 | 27.75 | |||
ABR38113.1 | BVU_0395 | BVU_RS02010 | hypothetical protein BVU_0395 [Phocaeicola vulgatus ATCC 8482] | 10 | 4.5 | 5.5 | |||
ABR38120.1 | BVU_0402 | BVU_RS02055 | putative cysteine synthase [Phocaeicola vulgatus ATCC 8482] | 0 | 1.5 | 2.75 | |||
ABR38123.1 | BVU_0408 | BVU_RS02085 | tryptophanyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482] | 3.25 | 2.25 | 0 | |||
ABR38124.1 | BVU_0409 | BVU_RS02090 | hypothetical protein BVU_0409 [Phocaeicola vulgatus ATCC 8482] | 19 | 7.5 | 8.5 | |||
ABR38125.1 | BVU_0410 | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase [Phocaeicola vulgatus ATCC 8482] | 83.75 | 29 | 4.75 | |||
ABR38127.1 | BVU_0412 | BVU_RS02105 | putative protein disulfide isomerase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0.75 | |||
ABR38129.1 | BVU_0414 | BVU_RS02115 | major outer membrane protein OmpA [Phocaeicola vulgatus ATCC 8482] | 417.25 | 912.25 | 1338.25 | |||
ABR38135.1 | BVU_0420 | BVU_RS02145 | CysQ, sulfite synthesis pathway protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0.75 | 0 | |||
ABR38136.1 | BVU_0421 | BVU_RS02150 | conserved hypothetical exported protein [Phocaeicola vulgatus ATCC 8482] | 2.5 | 1.5 | 1.25 | |||
ABR38137.1 | BVU_0422 | BVU_RS02155 | DNA mismatch repair protein mutL [Phocaeicola vulgatus ATCC 8482] | 0 | 3 | 4.5 | |||
ABR38138.1 | BVU_0423 | BVU_RS02160 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 3 | |||
ABR38140.1 | BVU_0425 | BVU_RS02170 | peptidyl-prolyl cis-trans isomerase [Phocaeicola vulgatus ATCC 8482] | 7.75 | 9 | 6.75 | |||
ABR38141.1 | BVU_0426 | BVU_RS02175 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 5 | 0.75 | 0 | |||
ABR38143.1 | BVU_0428 | BVU_RS02185 | inosine-5'-monophosphate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 25 | 28.75 | 28.75 | |||
ABR38157.1 | BVU_0442 | BVU_RS02265 | ATP-dependent DNA helicase recQ [Phocaeicola vulgatus ATCC 8482] | 9 | 12 | 4.25 | |||
ABR38158.1 | BVU_0443 | BVU_RS02270 | ATP-dependent Clp protease ATP-binding subunit [Phocaeicola vulgatus ATCC 8482] | 3.5 | 4.5 | 3.5 |
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Name | Locus tag | Function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
glycine biosynthesis I | |||||||||
GlyA | BVU_RS16795 | serine hydroxymethyltransferase | 7 | 18 | 18 | ||||
glycine biosynthesis II | |||||||||
GcvP | BVU_RS15125 | glycine dehydrogenase | 0 | 2 | 0 | ||||
L-alanine biosynthesis I | |||||||||
- | BVU_RS06885 | cysteine desulfurase | 0 | 0 | 1 | ||||
L-arginine biosynthesis (via L-ornithine) | |||||||||
ArgB | - | - | - | - | - | ||||
ArgB | BVU_RS06775 | putative acetylglutamate kinase | 0 | 0 | 1 | ||||
- | BVU_RS03000 | N-acetyl-gamma-glutamyl-phosphate reductase | 3 | 2 | 2 | ||||
- | BVU_RS02995 | acetylornithine aminotransferase | 3 | 4 | 5 | ||||
- | BVU_RS07505 | - | - | - | - | ||||
- | BVU_RS20030 | carbamyl phosphate synthetase | 28 | 13 | 3 | ||||
- | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2 | 5 | 4 | ||||
- | BVU_RS20255 | - | - | - | - | ||||
- | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
- | BVU_RS02805 | ornithine carbamoyltransferase | 3 | 3 | 4 | ||||
- | BVU_RS03005 | argininosuccinate synthase | 6 | 9 | 7 | ||||
ArgH | - | - | - | - | - | ||||
L-asparagine biosynthesis I | |||||||||
AsnB | - | asparagine synthase B | - | - | - | ||||
L-asparagine biosynthesis II | |||||||||
- | BVU_RS20790 | asparagine synthase A | 6 | 6 | 0 | ||||
L-aspartate biosynthesis | |||||||||
- | BVU_RS11395 | aspartate 4-decarboxylase | 0 | 0 | 1 | ||||
L-cystein biosynthesis I | |||||||||
- | BVU_RS05520 | serine acetyltransferase | 0 | 0 | 1 | ||||
CysK | BVU_RS02055 | cysteine synthase A | 0 | 2 | 3 | ||||
L-cystein biosynthesis IV | |||||||||
- | BVU_RS05985 | S-adenosylmethionine synthase | 3 | 3 | 3 | ||||
- | BVU_RS07105 | 2.1.1.- / S-adenosyl-methyltransferase | 0 | 0 | 2 | ||||
- | BVU_RS04530 | S-adenosylhomocysteine nucleosidase | 1 | 2 | 1 | ||||
- | BVU_RS04535 | S-ribosylhomocysteine lyase | 0 | 0 | 2 | ||||
- | - | 4.2.1.22 | - | - | - | ||||
- | BVU_RS10335 | 2.5.1.48 / homoserine O-succinyltransferase | 0 | 0 | 1 | ||||
L-glutamate biosynthesis II | |||||||||
- | BVU_RS01250 | glutamate dehydrogenase | 77 | 66 | 43 | ||||
- | BVU_RS01255 | glutamate dehydrogenase | 23 | 17 | 10 | ||||
L-glutamate biosynthesis III | |||||||||
BVU_RS01275 | glutamate dehydrogenase | 0 | 10 | 12 | |||||
- | BVU_RS01250 | glutamate dehydrogenase | 77 | 66 | 43 | ||||
L-glutamine biosynthesis I | |||||||||
- | BVU_RS17720 | glutamine synthetase | 0 | 1 | 0 | ||||
- | BVU_RS17970 | glutamine synthetase | 10 | 13 | 8 | ||||
- | BVU_RS20050 | glutamine synthetase | - | - | - | ||||
L-histidine biosynthesis | |||||||||
- | BVU_RS11880 | ATP phosphoribosyltransferase | 0 | 1 | 0 | ||||
- | BVU_RS19330 | - | - | - | - | ||||
HisA | BVU_RS19320 | 5.3.1.16 | 4 | 3 | 4 | ||||
HisH | BVU_RS20510 | 4.3.2.- | 1 | 0 | 0 | ||||
HisB | BVU_RS11895 | histidinol-phosphate aminotransferase | - | - | - | ||||
HisC | BVU_RS11890 | 2.6.1.9 | - | - | - | ||||
- | BVU_RS17605 | - | - | - | |||||
HisD | BVU_RS11885 | histidinal dehydrogenase | - | - | - | ||||
L-homocysteine biosynthesis | |||||||||
- | BVU_RS10335 | homoserine O-succinyltransferase | 0 | 0 | 1 | ||||
- | BVU_RS03900 | O-acetylhomoserine (thiol)-lyase | 4 | 2 | 1 | ||||
- | BVU_RS13630 | O-acetylhomoserine (thiol)-lyase | 7 | 4 | 7 | ||||
L-homoserine biosynthesis | |||||||||
- | BVU_RS10375 | putative aspartokinase I-homoserine dehydrogenase | 26 | 21 | 9 | ||||
- | BVU_RS19340 | aspartokinase | 13 | 11 | 8 | ||||
- | BVU_RS01045 | aspartate-semialdehyde dehydrogenase | 22 | 33 | 31 | ||||
L-isoleucine biosynthesis I | |||||||||
- | BVU_RS19515 | threonine ammonia-lyase | - | - | - | ||||
IlvB | BVU_RS12865 | acetolactate synthase large subunit | 2 | 0 | 0 | ||||
IlvN | BVU_RS12870 | acetohydroxyacid synthase small subunit | 9 | 13 | 14 | ||||
IlvC | BVU_RS12880 | ketol-acid reductoisomerase | 22 | 24 | 26 | ||||
- | BVU_RS12860 | dihydroxy-acid dehydratase | 6 | 6 | 5 | ||||
- | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
L-isoleucine biosynthesis IV | |||||||||
- | BVU_RS02915 | propanoate:CoA ligase (AMP-forming) | - | - | - | ||||
- | BVU_RS00045 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
- | BVU_RS19410 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
- | BVU_RS15255 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
- | BVU_RS07510 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
- | BVU_RS04995 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
- | BVU_RS04960 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
IlvB | BVU_RS12865 | acetolactate synthase large subunit | 2 | 0 | 0 | ||||
IlvN | BVU_RS12870 | acetohydroxyacid synthase small subunit | 9 | 13 | 14 | ||||
IlvC | BVU_RS12880 | ketol-acid reductoisomerase | 22 | 24 | 26 | ||||
- | BVU_RS12860 | dihydroxy-acid dehydratase | 6 | 6 | 5 | ||||
- | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
L-leucine biosynthesis | |||||||||
- | BVU_RS10160 | 2-isopropylmalate synthase | 9 | 11 | 8 | ||||
- | BVU_RS10175 | 2-isopropylmalate synthase | 0 | 1 | 0 | ||||
LeuC | BVU_RS10165 | 3-isopropylmalate dehydratase large subunit | 7 | 10 | 6 | ||||
LeuD | BVU_RS10170 | 3-isopropylmalate dehydratase small subunit | 1 | 0 | 0 | ||||
LeuB | BVU_RS10180 | 3-isopropylmalate dehydrogenase | 3 | 3 | 2 | ||||
- | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
L-lysine biosynthesis III | |||||||||
- | BVU_RS10375 | putative aspartokinase I-homoserine dehydrogenase | 26 | 21 | 6 | ||||
- | BVU_RS19340 | aspartokinase | 13 | 11 | 8 | ||||
- | BVU_RS01045 | aspartate-semialdehyde dehydrogenase | 22 | 33 | 31 | ||||
- | BVU_RS16620 | putative dihydrodipicolinate synthase | 1 | 4 | 3 | ||||
DapB | - | - | - | - | - | ||||
- | BVU_RS08435 | putative oxidoreductase | 22 | 40 | 68 | ||||
LysA | BVU_RS19345 | diaminopimelate decarboxylase | 2 | 3 | 1 | ||||
- | BVU_RS20260 | - | - | - | - | ||||
L-lysine biosynthesis VI |
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Name | Locus tag | function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
5-aminoimidazole ribonucleotide biosynthesis II | |||||||||
- | BVU_RS04370 | - | - | - | - | ||||
- | BVU_RS19210 | - | - | - | - | ||||
- | BVU_RS20040 | - | - | - | - | ||||
- | BVU_RS05540 | phosphoribosylamine--glycine ligase | 3 | 3 | 3 | ||||
- | BVU_RS13930 | phosphoribosylglycinamide formyltransferase 2 | 1 | 6 | 5 | ||||
- | BVU_RS00400 | putative phosphoribosylformylglycinamidine synthase | 17 | 10 | 1 | ||||
- | BVU_RS00475 | putative phosphoribosylformylglycinamidine cyclo-ligase | 1 | 2 | 1 | ||||
adenine and adenosine salvage I | |||||||||
- | BVU_RS08145 | purine nucleoside phosphorylase I | 0 | 4 | 7 | ||||
- | BVU_RS06135 | adenine phosphoribosyltransferase | 1 | 1 | 2 | ||||
adenine and adenosine salvage IV | |||||||||
- | BVU_RS04245 | - | - | - | - | ||||
adenosine deoxyriboculeotide de novo synthesis | |||||||||
- | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
- | BVU_RS15620 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
CMP phosphorylation | |||||||||
- | BVU_RS09815 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
guanine and guanosin salvage | |||||||||
- | BVU_RS08145 | purine nucleoside phosphorylase I | 0 | 4 | 7 | ||||
Hpt | BVU_RS08545 | putative hypoxanthine guanine phosphoribosyltransferase | 0 | 3 | 5 | ||||
Xpt | BVU_RS12750 | xanthine phosphoribosyltransferase | 1 | 0 | 0 | ||||
guanosine deoxyriboculeotide de novo synthesis | |||||||||
- | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
- | BVU_RS15620 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
pyrimidine deoxyribonucleosides salvage | |||||||||
- | BVU_RS09765 | cytidine/deoxycytidylate deaminase | 0 | 2 | 3 | ||||
- | BVU_RS09305 | - | - | - | - | ||||
- | BVU_RS09885 | putative thymidylate synthase B | 1 | 0 | 1 | ||||
- | BVU_RS09305 | - | - | - | - | ||||
- | - | 2.7.1.74 | - | - | - | ||||
pyrimidine deoxyribonucleostide phosphorylation | |||||||||
- | BVU_RS09815 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
- | - | 2.7.4.9/12/13; | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
pyrimidine deoxyriboculeotide de novo synthesis | |||||||||
- | - | 3.6.1.15; | - | - | - | ||||
BVU_RS00015 | putative ribonucleoside reductase | 8 | 5.75 | 2 | |||||
- | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
- | BVU_RS15620 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
- | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
- | BVU_RS15620 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
- | BVU_RS07130 | deoxyuridine 5'-triphosphate nucleotidohydrolase | 1 | 0 | 1 | ||||
- | BVU_RS01730 | - | - | - | - | ||||
- | BVU_RS12965 | - | - | - | - | ||||
- | BVU_RS09885 | putative thymidylate synthase B | 1 | 0 | 1 | ||||
- | - | 2.7.4.9/12/13; | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
pyrimidine nucleobases salvage I | |||||||||
- | BVU_RS04955 | - | - | - | - | ||||
- | BVU_RS04990 | - | - | - | - | ||||
pyrimidine ribonucleosides salvage I | |||||||||
BVU_RS16775 | cytidine/deoxycytidylate deaminase | 0 | 2 | 3 | |||||
- | BVU_RS11865 | uridine kinase | 0 | 0 | 1 | ||||
- | - | 2.7.1.213; | - | - | - | ||||
UMP biosynthesis II | |||||||||
- | BVU_RS20030 | carbamoyl phosphate synthetase | 28.25 | 13.25 | 3.25 | ||||
- | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2.25 | 5.25 | 4.25 | ||||
- | BVU_RS20255 | - | - | - | - | ||||
- | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
PyrB | - | aspartate carbamoyltransferase catalytic chain | 0 | 2 | 0 | ||||
- | BVU_RS16780 | aspartate carbamoyltransferase regulatory chain | 1 | 2 | 3 | ||||
- | BVU_RS11365 | dihydroorotase | 0 | 0 | 1 | ||||
- | BVU_RS19405 | putative dihydroorotate dehydrogenase | 0 | 3 | 2 | ||||
- | BVU_RS04365 | orotate phosphoribosyltransferase | 13 | 36 | 48 | ||||
PyrF | BVU_RS00485 | orotidine 5'-phosphate decarboxylase | 0 | 0 | 1.5 | ||||
UMP biosynthesis III | |||||||||
- | BVU_RS20030 | carbamyl phosphate synthetase | 28.25 | 13.25 | 3.25 | ||||
- | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2.25 | 5.25 | 4.25 | ||||
- | BVU_RS20255 | - | - | - | - | ||||
- | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
PyrB | BVU_RS16775 | aspartate carbamoyltransferase catalytic chain | 0 | 2 | 0 | ||||
- | BVU_RS16780 | aspartate carbamoyltransferase regulatory chain | 1 | 2 | 3 | ||||
- | BVU_RS11365 | dihydroorotase | 0 | 0 | 1 | ||||
- | BVU_RS16640 | - | - | - | - | ||||
- | BVU_RS04365 | orotate phosphoribosyltransferase | 13 | 36 | 48 | ||||
PyrF | BVU_RS00485 | orotidine 5'-phosphate decarboxylase | 0 | 0 | 1.5 | ||||
UTP and CTP de novo biosynthesis | |||||||||
- | BVU_RS09490 | uridylate kinase | 1 | 1 | 1 | ||||
- | BVU_RS09815 | - | - | - | - | ||||
- | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
- | BVU_RS16855 | CTP synthase | 9.5 | 8.25 | 3.25 |
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Name | Locustag | function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
fatty acid biosynthesis initiation I | |||||||||
AccC | - | - | - | - | - | ||||
FabD | BVU_RS19990 | malonyl CoA-acyl carrier protein transacylase | 5 | 9 | 6 | ||||
- | BVU_RS02315 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 12 | 6 | 2 | ||||
fatty acid elongation -- saturation | |||||||||
- | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
FabG | - | - | - | - | |||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
FabG | BVU_RS10065 | enoyl-[acyl-carrier-protein] reductase | 10 | 15 | 20 | ||||
FabG | - | - | - | - | - | ||||
- | BVU_RS05130 | - | - | - | - | ||||
palmitate biosynthesis II | |||||||||
- | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
FabG | - | - | - | - | |||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
FabG | - | - | - | - | - | ||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS12875 | - | - | - | - | ||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS12875 | - | - | - | - | ||||
- | BVU_RS00045 | - | - | - | - | ||||
- | BVU_RS19410 | - | - | - | - | ||||
- | BVU_RS15255 | - | - | - | - | ||||
- | BVU_RS07510 | - | - | - | - | ||||
lipid IVA biosynthesis | |||||||||
- | BVU_RS00505 | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | 0 | 1.75 | 3.5 | ||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
- | BVU_RS00495 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | 1 | 2.25 | 0.75 | ||||
- | BVU_RS15065 | - | - | - | - | ||||
- | BVU_RS02680 | - | - | - | - | ||||
LpxB | BVU_RS09710 | - | - | - | - | ||||
LpxK | BVU_RS08150 | - | - | - | - | ||||
palmitoleate biosynthesis I | |||||||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
FabG | - | - | - | - | |||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS12875 | - | - | - | - | ||||
CDP-diacylglycerol biosynthesis I | |||||||||
- | BVU_RS02595 | - | - | - | - | ||||
- | - | 2.3.1.15; | - | - | - | ||||
- | BVU_RS11350 | - | - | - | - | ||||
- | BVU_RS09720 | - | - | - | - | ||||
phophatidylethanolamine biosynthesis I | |||||||||
- | BVU_RS09540 | - | - | - | - | ||||
- | BVU_RS09545 | phosphatidylserine decarboxylase | 0.75 | 0 | 0 | ||||
gondoate biosynthesis I (anaerobic) | |||||||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
FabG | - | - | - | - | |||||
stearate biosynthesis II | |||||||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
- | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
FabG | - | - | - | - | - | ||||
- | BVU_RS05130 | - | - | - | - | ||||
- | BVU_RS12875 | - | - | - | - | ||||
- | BVU_RS00045 | - | - | - | - | ||||
- | BVU_RS19410 | - | - | - | - | ||||
- | BVU_RS15255 | - | - | - | - | ||||
- | BVU_RS07510 | - | - | - | - | ||||
peptidoglycan biosynthesis I | |||||||||
MurA | - | - | - | - | - | ||||
- | BVU_RS11270 | - | - | - | - | ||||
- | BVU_RS07065 | - | - | - | - | ||||
Murl | - | - | - | - | - | ||||
MurD | - | - | - | - | - | ||||
- | BVU_RS07090 | - | - | - | - | ||||
- | BVU_RS02785 | D-alanine--D-alanine ligase | 0 | 0.75 | 0 | ||||
- | BVU_RS08970 | - | - | - | - | ||||
- | BVU_RS02365 | - | - | - | - | ||||
MraY | - | 2.7.8.13; | - | - | - | ||||
MurG | - | - | - | - | - |
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Name | average 1/2ODmax | average ODmax | average ODstat | |||||||||||||||||||||
F23-30 | ||||||||||||||||||||||||
3,6-dimethyl-2,5-piperazinedione | 8265378.743 | 1.099494342E7 | 1.384175322E7 | |||||||||||||||||||||
(4-hydroxyphenyl)acetate | 0 | 1420991.782 | 4245243.065 | |||||||||||||||||||||
adenosine | 1.914616041E8 | 2.049224602E8 | 4.368890932E7 | |||||||||||||||||||||
AMP | 0 | 2.542298812E7 | 0 | |||||||||||||||||||||
alanine | 3.048153434E8 | 1023598628 | 4.595991406E8 | |||||||||||||||||||||
beta-Alanine | 1.076268625E7 | 1.472702677E7 | 1.153525451E7 | |||||||||||||||||||||
arabinose | 7.267107188E7 | 5.558992709E7 | 0 | |||||||||||||||||||||
asparagine | 9194929.216 | 1.065020677E8 | 4.63419194E7 | |||||||||||||||||||||
aspartate | 1336480732 | 2.561961123E9 | 1979001674 | |||||||||||||||||||||
N-acetyl-aspartate | 1.430374177E7 | 1.358601966E7 | 1.834177997E7 | |||||||||||||||||||||
4-hydroxybutanoate | 4341238.489 | 1.611925834E7 | 3.671945556E7 | |||||||||||||||||||||
citraconic acid | 3044486.818 | 2.246157863E7 | 3.030884869E7 | |||||||||||||||||||||
citrate | 2.312309536E7 | 137330468 | 8.736149751E7 | |||||||||||||||||||||
cytosine | 2.809813669E7 | 8.62736557E7 | 3.474310703E7 | |||||||||||||||||||||
erythritol | 5054322.738 | 1.778982275E7 | 1.638248006E7 | |||||||||||||||||||||
erythronic acid | 2.272937928E7 | 3.634991079E7 | 2.688512397E7 | |||||||||||||||||||||
erythrose | 2.787263181E7 | 5.955155986E7 | 6765894.403 | |||||||||||||||||||||
ethanolamine | 4.969040726E7 | 1.530971721E8 | 3.033750008E8 | |||||||||||||||||||||
ethanolaminephosphate | 2.546777747E7 | 2.813185905E7 | 9443448.536 | |||||||||||||||||||||
fructose | 1.850946281E8 | 1.257242206E8 | 0 | |||||||||||||||||||||
fructose-6-phosphate | 2.849009979E8 | 1.242458087E8 | 0 | |||||||||||||||||||||
fumarate | 2.404458386E8 | 5.637002336E8 | 6.521516803E8 | |||||||||||||||||||||
gluconic-acid | 2.568004851E8 | 1.181679281E8 | 9550974.311 | |||||||||||||||||||||
N-acetyl-glucosamine | 9768310.857 | 7213146.982 | 0 | |||||||||||||||||||||
glucose-6-phosphate | 4.067897086E8 | 1.828808347E8 | 0 | |||||||||||||||||||||
glutamate | 1340216244 | 6.658121568E9 | 1169145644 | |||||||||||||||||||||
glutamine | 2.056023878E8 | 4.190071894E8 | 2.240359272E8 | |||||||||||||||||||||
2-hydroxy-glutarate | 0 | 3.294905939E7 | 3.590857646E7 | |||||||||||||||||||||
glyceraldehyde | 7750331.635 | 2.298763835E7 | 1.335637885E7 | |||||||||||||||||||||
glycerate | 3.755884754E8 | 2.740662649E8 | 1.147235845E8 | |||||||||||||||||||||
2-phosphoglycerate | 0 | 4572553.126 | 0 | |||||||||||||||||||||
3-phosphoglycerate | 2.302342533E7 | 3.439023367E7 | 5846386.359 | |||||||||||||||||||||
glycerol | 4.661167241E7 | 6.570150232E7 | 6.856078056E7 | |||||||||||||||||||||
glycerol-3-phosphate | 1.041908498E7 | 1.718752623E8 | 1.772606967E8 | |||||||||||||||||||||
glycine | 6.209431422E8 | 2057670347 | 4.592510717E8 | |||||||||||||||||||||
glycolate | 1.405411682E7 | 2.059001147E7 | 1.808473331E7 | |||||||||||||||||||||
homoserine | 3.335082045E8 | 3.591716395E8 | 1.399917335E7 | |||||||||||||||||||||
N-2-oxocaproyl-homoserine lactone | 1.517760032E7 | 1.867238667E7 | 2.293308736E7 | |||||||||||||||||||||
N-2-oxooctanyol-DL-homoserine lactone | 0 | 0 | 11635.331750000001 | |||||||||||||||||||||
N-hexanoyl-homoserine lactone | 0 | 0 | 3740822.157 | |||||||||||||||||||||
homoserine-lactone | 1.809613475E7 | 1.95027542E7 | 2.570292888E7 | |||||||||||||||||||||
indole-3-acetaldehyde | 4383476.133 | 9365954 | 8288216.327 | |||||||||||||||||||||
indole-3-acetic acid | 0 | 4.691573849E7 | 7820113.983 | |||||||||||||||||||||
indole-3-lactate | 2186880.9 | 2630974.483 | 2594399.649 | |||||||||||||||||||||
myoinositol-2-phosphate | 1.775189535E7 | 2.390872067E7 | 5423904.234 | |||||||||||||||||||||
isoleucine | 1.374542193E8 | 3.199794331E8 | 1.217658453E8 | |||||||||||||||||||||
lactate | 4.274263196E8 | 8.536903754E8 | 9.656382479E8 | |||||||||||||||||||||
leucine | 5.790712841E8 | 1439535415 | 5.516541295E8 | |||||||||||||||||||||
maleamate | 4192487.17 | 5795711.583 | 5199904.97 | |||||||||||||||||||||
malate | 3.923954001E8 | 848322731 | 8.097098594E8 | |||||||||||||||||||||
2-isopropylmalic acid | 0 | 2.890969401E7 | 0 | |||||||||||||||||||||
2-methyl-malate | 6.080885221E7 | 1.079938159E8 | 4.788533355E7 | |||||||||||||||||||||
maltose | 1.326685341E8 | 133750122 | 1800785.279 | |||||||||||||||||||||
3,4-dihydroxy-mandelic acid | 8064132.172 | 8749595.731 | 1.079897095E7 | |||||||||||||||||||||
mannose | 4.487437963E8 | 252336952 | 1.393508464E7 | |||||||||||||||||||||
mannose-6-phosphate | 9.636200797E7 | 5.955190153E7 | 0 | |||||||||||||||||||||
methionine | 2034513.532 | 7.628279346E7 | 2.730399671E8 | |||||||||||||||||||||
Nicotinamide | 1.258987794E8 | 501164642 | 3.260022908E8 | |||||||||||||||||||||
nicotinic acid | 1.170017169E8 | 2.097302329E8 | 4.873414118E8 | |||||||||||||||||||||
phenylacetate | 2956646.363 | 4456889.651 | 9633215.127 | |||||||||||||||||||||
phenylalanine | 4.388546669E8 | 4.935537981E8 | 1.789371058E8 | |||||||||||||||||||||
phenylpyruvate | 2956401.783 | 3496928.418 | 2585520.354 | |||||||||||||||||||||
phosphoenolpyruvate | 7904362.188 | 1.402691499E7 | 5128633.264 | |||||||||||||||||||||
proline | 2.666568981E8 | 1511423646 | 1605577602 | |||||||||||||||||||||
2-amino-2-methyl-3-hydroxy-propanoate | 0 | 0 | 3.371460358E7 | |||||||||||||||||||||
putrescine | 0 | 1.005640698E7 | 1.171328886E7 | |||||||||||||||||||||
pyroglutamate | 2.540546723E9 | 4.104969694E9 | 3.284833895E9 | |||||||||||||||||||||
pyrophosphate | 0 | 9.711275107E7 | 0 | |||||||||||||||||||||
pyruvate | 5.764449038E7 | 1.054069723E8 | 4.67062416E7 | |||||||||||||||||||||
3-hydroxypyruvate | 2.813426578E7 | 3.874564615E7 | 4.709903788E7 | |||||||||||||||||||||
rhamnose | 5467552.28 | 7287586.92 | 0 | |||||||||||||||||||||
ribitol | 1000000000 | 1000000000 | 1000000000 | |||||||||||||||||||||
ribose | 694367707 | 5.328332125E8 | 4.384904984E8 | |||||||||||||||||||||
sedoheptulose-7-phosphate | 5.917838268E7 | 7.411755046E7 | 3993024.476 | |||||||||||||||||||||
serine | 1276441786 | 3.335129505E9 | 7.695622812E8 | |||||||||||||||||||||
cycloserine | 5.084750116E7 | 2.600599198E8 | 8.100619203E7 | |||||||||||||||||||||
N-acetyl-serine | 1.059336746E8 | 1.842237611E8 | 0 | |||||||||||||||||||||
3-dehydroshikimate | 2915323.859 | 3497219.62 | 1688258.611 | |||||||||||||||||||||
spermine | 3541465.43 | 4704480.265 | 3252199.329 | |||||||||||||||||||||
succinate | 2.657480135E9 | 4.484433305E9 | 5.284361116E9 | |||||||||||||||||||||
threonine | 1749332247 | 3.39003851E9 | 8.915184433E7 | |||||||||||||||||||||
threose | 3516783.548 | 4772561.199 | 5178304.532 | |||||||||||||||||||||
thymine | 589083380 | 6.178797086E8 | 2.814467823E8 | |||||||||||||||||||||
tryptophan | 2539672.872 | 4857143.382 | 6075927.328 | |||||||||||||||||||||
tyrosine | 9.550352555E7 | 1.368401247E8 | 7.821043712E7 | |||||||||||||||||||||
Unknown#1325.8-pin-mhe_007 | 2.746316097E7 | 3.831566682E7 | 3.146717502E7 | |||||||||||||||||||||
Unknown#1366.59-ppu-cja_010 | 1.028040972E8 | 1.286606871E8 | 3.83307523E7 | |||||||||||||||||||||
Unknown#1366.9-pin-mhe_011 | 0 | 0 | 5.100790519E7 | |||||||||||||||||||||
Unknown#1392.1-pin-mhe_012 | 0 | 0 | 8.392893011E7 | |||||||||||||||||||||
Uracil | 1702329403 | 2117311135 | 1641307740 | |||||||||||||||||||||
uridine | 1.474320764E7 | 8750848.652 | 0 | |||||||||||||||||||||
valine | 9.230785067E8 | 2.592221665E9 | 3.434458049E8 | |||||||||||||||||||||
xylitol | 2.239443265E7 | 0 | 0 | |||||||||||||||||||||
xylose | 1.166395907E7 | 1.05930369E7 | 3438379.921 | |||||||||||||||||||||
xylulose | 7.952552253E7 | 7.546167784E7 | 0 | |||||||||||||||||||||
xylulose-5-phosphate | 855942.3938 | 1592458.039 | 0 |
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CoA | 1/2ODmax | ODmax | Odstat | |||||||||
CoenzymeA | 4912868 | 4693358 | 4415376 | 4029986 | 7999299 | 5436994 | 5471682 | 7341028 | 3722929 | 3119229 | 3701465 | 3818397 |
Acetyl-CoA | 58415094 | 60965398 | 63465947 | 60060491 | 45393976 | 31968886 | 35167580 | 45404304 | 44039022 | 39014335 | 41993660 | 38573573 |
Propenoyl-CoA | 2135768 | 2095049 | 1494035 | 1733782 | 337249 | 305428 | 301575 | 250793 | 223376 | 182202 | 258149 | 281767 |
Propanoyl-CoA | 5023647 | 5226892 | 4527377 | 4287440 | 1943418 | 2347079 | 1925851 | 2219608 | 7656282 | 5159891 | 6943862 | 6861228 |
Butanoyl-CoA | 4776301 | 5393140 | 4026315 | 5894770 | 20097739 | 17224231 | 12407080 | 17225271 | 14975138 | 14403527 | 11433604 | 11987066 |
Isobutanoyl-CoA | 4371966 | 4922817 | 4109338 | 4505565 | 15840788 | 14356691 | 11994533 | 13954118 | 8893864 | 8921627 | 6932793 | 9596689 |
(S)-2-Methylbutanoyl-CoA | 9949737 | 10129657 | 8731578 | 8150428 | 15483160 | 15620341 | 18433654 | 20650339 | 44850423 | 36776164 | 32778771 | 48635322 |
Isovaleryl-CoA | 4999600 | 4500310 | 3911202 | 3374602 | 25918635 | 19124343 | 20376423 | 23534793 | 55823717 | 35807178 | 53743495 | 46561363 |
Pentanoyl-CoA | 824233 | 868427 | 721083 | 755892 | 1771268 | 1402055 | 1438430 | 1969274 | 5972812 | 6884757 | 6884792 | 7280826 |
Malonyl-CoA | 177622 | 217814 | 177321 | 233897 | 732199 | 626023 | 648105 | 713322 | 871181 | 1022431 | 866700 | 887095 |
Methylmalonyl-CoA | 5123649 | 4195843 | 3916541 | 3763798 | 2875768 | 1995122 | 2569047 | 1923211 | 9979938 | 7408454 | 9096165 | 10471671 |
Succinyl-CoA | 21169812 | 17919356 | 22625778 | 14636368 | 19358027 | 22797158 | 14771345 | 17849154 | 31131938 | 26989307 | 33768034 | 33003571 |
Cyclohexa-1,5-dienecarbonyl-CoA | 1227884 | 1306538 | 925570 | 1214402 | 2339858 | 2739259 | 2490548 | 2597333 | 7394661 | 5144411 | 8170709 | 7629941 |
Cyclohex-1-ene-1-carboxyl-CoA | 221606 | 177166 | 155359 | 182230 | 1090067 | 856545 | 745147 | 857469 | 595135 | 746863 | 741959 | 566189 |
Methylsuccinyl-CoA | 430019 | 486722 | 340381 | 425041 | 396548 | 429238 | 333357 | 396585 | 485835 | 408756 | 350739 | 325660 |
C28H42N7O18P3S, similar to beta-(2-Furyl)propionyl-CoA | 1739194 | 1817161 | 1652515 | 1545113 | 1034390 | 1076613 | 1304001 | 1434617 | 605293 | 588617 | 823728 | 772815 |
C29H41N8O17P3S, exact mass based | 1956558 | 1959717 | 1510641 | 1436500 | 11001764 | 9401792 | 8029753 | 10627222 | 9750493 | 8677756 | 9005034 | 11810337 |
Phenylglyoxylyl-CoA | 81301 | 97570 | 84085 | 88380 | 883414 | 781849 | 817047 | 1053451 | 1346654 | 1350960 | 1368696 | 1943608 |
C29H43N8O17P3S, similar to N-Methylanthraniloyl-CoA | 3621909 | 4315683 | 2862026 | 3731336 | 3989842 | 4396538 | 3225252 | 3857268 | 1260793 | 990580 | 1201589 | 1246272 |
2,3-Dihydro-2,3-dihydroxybenzoyl-CoA | 610018 | 585519 | 641224 | 594254 | 1103750 | 1019841 | 903896 | 818590 | 473518 | 456067 | 498651 | 496308 |
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Name | average 1/2ODmax | average ODmax | average ODstat | ||||||
(4-hydroxyphenyl)acetate | 0 | 0 | 9289.599772 | ||||||
1,6-anhydro-glucose | 13241.09054 | 21598.00354 | 5276.194721 | ||||||
1-O-methyl-alpha-glucopyranoside | 120221.2645 | 22595.36598 | 0 | ||||||
1-pyrroline-2-carboxylate | 11399.37926 | 12334.10381 | 12984.44374 | ||||||
2,4-dihydroxybutanoate | 23100.79123 | 17651.50354 | 17132.32856 | ||||||
2-amino-2-methylpropane-1,3-diol | 17292.52606 | 304397.5939 | 119436.4133 | ||||||
2-aminobutanoate | 13801.57337 | 64058.93625 | 18782.03809 | ||||||
2-aminoisobutanoate | 1846.437294 | 2522.104867 | 981.3441083 | ||||||
2-hydroxy-4-(methylthio)butanoate | 1062.234506 | 4951.057944 | 21931.4075 | ||||||
2-hydroxybutanoate | 0 | 21893.13429 | 20704.05855 | ||||||
2-hydroxy-glutarate | 9126.16993 | 93357.42608 | 124743.2806 | ||||||
2-hydroxyisocaproate | 0 | 6154.527856 | 7563.933773 | ||||||
2-isopropylmalic acid | 9318.271904 | 32305.2513 | 26006.79167 | ||||||
2-methyl-malate | 47322.16999 | 147337.0056 | 148228.6592 | ||||||
2-oxobutanoate | 1706.542423 | 5182.400179 | 1972.253655 | ||||||
2-oxoglutarate | 3825.152833 | 16351.44434 | 8373.118877 | ||||||
3,4-dihydroxybenzoate | 2154.914701 | 2729.888575 | 1818.869325 | ||||||
3-aminoisobutanoate | 51072.72964 | 53180.989 | 52068.8065 | ||||||
3-dehydroshikimate | 0 | 4274.800011 | 2519.69768 | ||||||
3-hydroxybenzoate | 1118.434005 | 1577.661383 | 1487.247318 | ||||||
3-hydroxyindole | 145483.7357 | 145062.1962 | 161133.4753 | ||||||
3-hydroxyisobutanoate | 1443.406185 | 2030.471884 | 4677.262604 | ||||||
3-hydroxyisovaleric acid | 0 | 0 | 13350.90751 | ||||||
4-hydroxybenzoate | 4347.213233 | 9265.616971 | 6439.181642 | ||||||
4-hydroxybutanoate | 8341.833798 | 57319.67342 | 130046.4036 | ||||||
4-hydroxyphenylacetonitrile | 1702.447467 | 1965.253942 | 2211.86605 | ||||||
4-oxobutanoate | 0 | 2897.024902 | 2276.482706 | ||||||
4-oxopentanoic acid | 12512.22651 | 14994.85326 | 15058.76188 | ||||||
6-deoxy-mannose | 115413.7129 | 40962.12844 | 1007.050309 | ||||||
alanine | 186437.366 | 675858.5938 | 377179.5159 | ||||||
aminomalonic acid | 0 | 32029.00758 | 30254.65806 | ||||||
arabinonate | 2480.46599 | 2885.912754 | 826.9863153 | ||||||
arabinono-1,4-lactone | 6041.827278 | 8305.663046 | 0 | ||||||
arabinose | 113599.8842 | 18742.39801 | 0 | ||||||
asparagine | 0 | 3974.843049 | 0 | ||||||
aspartate | 0 | 22641.73173 | 0 | ||||||
benzene-1,2,4-triol | 2685.662953 | 6543.742449 | 9444.725211 | ||||||
benzoate | 164377.0865 | 214497.77 | 234102.4865 | ||||||
beta-Alanine | 111004.0078 | 17010.72479 | 25348.08442 | ||||||
butylamine | 2583.330356 | 7800.087292 | 3031.189135 | ||||||
citraconic acid | 13291.46357 | 20733.4688 | 14481.70315 | ||||||
citrate | 19032.68054 | 31779.28151 | 26073.8232 | ||||||
cysteine | 0 | 8649.927068 | 7935.665552 | ||||||
diethylene glycol | 114075.8286 | 126325.7524 | 147065.7096 | ||||||
erythritol | 6432.784773 | 20202.39974 | 35682.00093 | ||||||
erythronic acid | 17425.01564 | 52475.53757 | 36736.3588 | ||||||
erythronic acid-1,4-lactone | 5212.858485 | 16058.7725 | 12997.351 | ||||||
erythrose | 21921.41473 | 78241.62423 | 44883.12959 | ||||||
ethanolamine | 30960.5817 | 139357.8415 | 274287.2696 | ||||||
fructose | 518667.171 | 284286.21 | 3647.387377 | ||||||
fumarate | 74158.3667 | 89377.55297 | 77311.96085 | ||||||
galactose | 287798.7167 | 136190.6944 | 0 | ||||||
gluconic-acid | 53450.97373 | 24254.20329 | 5112.018837 | ||||||
glucose | 1401777.391 | 680722.0745 | 148902.9758 | ||||||
glutamine | 96326.14762 | 126582.3145 | 142426.8809 | ||||||
glyceraldehyde | 9937.889679 | 26075.91615 | 15092.50598 | ||||||
glycerate | 38642.76494 | 138259.5499 | 57055.02788 | ||||||
glycerol-3-phosphate | 0 | 2377.851981 | 1843.756899 | ||||||
glycine | 25679.78888 | 117986.9177 | 76740.94961 | ||||||
glycolate | 7575.441393 | 14218.2835 | 10748.57535 | ||||||
hydrocinnamic acid | 18962.46781 | 28176.20618 | 28493.75941 | ||||||
hydroquinone | 5964.373506 | 1497.075992 | 1384.895708 | ||||||
hydroxylamine | 42642.97452 | 54994.37608 | 55226.30733 | ||||||
indole-3-lactate | 0 | 510.5191295 | 568.7783619 | ||||||
isocaproate | 0 | 5383.709628 | 3284.426331 | ||||||
isoleucine | 16528.71098 | 38714.57974 | 18782.29433 | ||||||
isomaltose* | 285.1419036 | 630.276348 | 0 | ||||||
lactate | 782860.4662 | 994265.4398 | 1215024.733 | ||||||
laminaribiose* | 3458.983938 | 8499.335859 | 606.5945435 | ||||||
leucine | 0 | 54179.53124 | 24567.30548 | ||||||
malate | 415601.0876 | 965945.4366 | 945762.7512 | ||||||
maleate | 7494.438311 | 42037.55822 | 21269.74702 | ||||||
malonamide | 313710.7895 | 438380.1751 | 386739.6702 | ||||||
malonic acid | 0 | 1656.04694 | 1719.925459 | ||||||
mannonic acid-1,4-lactone | 0 | 492.9970468 | 0 | ||||||
mannose | 159580.4492 | 47561.44195 | 0 | ||||||
mannosylglycerate | 8411.381146 | 0 | 0 | ||||||
methyl 3,6-anhydro-alpha-galactopyranoside | 3513.663272 | 4304.23687 | 3661.989529 | ||||||
myo-inositol | 0 | 850.0713329 | 0 | ||||||
N-acetyl-galactosamine | 3671.443836 | 629.3391122 | 0 | ||||||
N-acetyl-glucosamine | 4287.622265 | 1006.047384 | 0 | ||||||
N-acetyl-phenylalanine | 0 | 0 | 972.2001417 | ||||||
nicotinic acid | 21321.99894 | 26841.36041 | 121129.9429 | ||||||
oxalate | 9393.353043 | 11625.98082 | 10514.72433 | ||||||
phenylpyruvate | 2495.374715 | 4905.818014 | 4074.834533 | ||||||
proline | 54337.72263 | 963555.2114 | 789359.9671 | ||||||
propane-1,2-diol | 12926.23761 | 15962.30631 | 31277.14495 | ||||||
propane-1,3-diol | 105286.998 | 53200.53431 | 0 | ||||||
putrescine | 8087.277356 | 0 | 0 | ||||||
pyridoxal | 0 | 1363.784526 | 519.1638029 | ||||||
pyroglutamate | 51637.52579 | 282849.0538 | 157454.2446 | ||||||
pyrrole-2-carboxylate | 6045.629836 | 12082.07825 | 8520.154384 | ||||||
pyruvate | 126135.6008 | 41206.06283 | 13904.45386 | ||||||
quinate | 1138.771335 | 1889.73512 | 1362.196213 | ||||||
ribonate | 3637.443671 | 6401.706855 | 4352.95201 | ||||||
ribose | 35320.99403 | 54534.9951 | 38510.98767 | ||||||
shikimic acid | 0 | 130438.5169 | 74191.88895 | ||||||
sorbitol | 7360.274366 | 0 | 0 | ||||||
succinate | 2298.598083 | 2452304.88 | 2784346.948 |