Selected Cell
Cell:
Value:
Outline
1P_vulgatus_ATCC_8482
2Proteomic_data
3Amino_acids
4Nucleotide
5Fatty_acdis_cell_wall
6Metabolites
7Metabolome_CoA
8Exo_Metabolome
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| Tab | Name | Contents | |||||||
| 1 | 1P_vulgatus_ATCC_8482 | Genome of P. vulgatus ATCC 8482 | |||||||
| 2 | 2Proteomics_data | Identified proteins with peptide counts | |||||||
| 3 | 3Amino_acids | BioCyc-predicted biosynthesis of amino acids including identified proteins | |||||||
| 4 | 4Nucleotide | BioCyc-predicted biosynthesis of nucleotides including identified proteins | |||||||
| 5 | 5Fatty_acdis_cell_wall | BioCyc-predicted biosynthesis of fatty acids and cell wall including identified proteins | |||||||
| 6 | 6Metabolites | Metabolites of the intracellular metabolome | |||||||
| 7 | 7Metabolome_CoA | CoAs of the metabolome | |||||||
| 8 | 8Exo_Metabolome | Metabolites of the extracellular metabolome | |||||||
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| Locus_Tag | Old_Tag | Start | Stop | Length AA | Strand | Gene_Name | EC_Number | Function | |
| BVU_RS00005 | BVU_0001 | 10 | 1416 | 468 | dnaA | chromosomal replication initiator protein DnaA | |||
| BVU_RS00010 | BVU_0002 | 1501 | 2241 | 246 | c | BVU_RS00010 | NADPH-dependent oxidoreductase | ||
| BVU_RS00015 | BVU_0003 | 2585 | 5131 | 848 | BVU_RS00015 | 1.17.4.1 | adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | ||
| BVU_RS00020 | BVU_0004 | 5224 | 8196 | 990 | c | BVU_RS00020 | membrane protein | ||
| BVU_RS00025 | BVU_0005 | 8358 | 8726 | 122 | folB | 4.1.2.25 | dihydroneopterin aldolase | ||
| BVU_RS00030 | BVU_0006 | 8873 | 9754 | 293 | c | BVU_RS00030 | radical SAM protein | ||
| BVU_RS00035 | BVU_0007 | 9842 | 10867 | 341 | c | BVU_RS00035 | glycosyltransferase family 2 protein | ||
| BVU_RS00040 | BVU_0008 | 10903 | 12219 | 438 | c | mtaB | tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB | ||
| BVU_RS00045 | BVU_0009 | 12325 | 13998 | 557 | BVU_RS00045 | long-chain fatty acid--CoA ligase | |||
| BVU_RS00050 | 14159 | 14359 | 66 | BVU_RS00050 | hypothetical protein | ||||
| BVU_RS00055 | BVU_0010 | 14514 | 15206 | 230 | BVU_RS00055 | hypothetical protein | |||
| BVU_RS00060 | BVU_0011 | 15276 | 15719 | 147 | c | rplI | 50S ribosomal protein L9 | ||
| BVU_RS00065 | BVU_0012 | 15735 | 16004 | 89 | c | rpsR | 30S ribosomal protein S18 | ||
| BVU_RS00070 | BVU_0013 | 16007 | 16351 | 114 | c | rpsF | 30S ribosomal protein S6 | ||
| BVU_RS00075 | BVU_0014 | 16561 | 17007 | 148 | BVU_RS00075 | MarR family transcriptional regulator | |||
| BVU_RS00080 | 17116 | 17298 | 60 | BVU_RS00080 | hypothetical protein | ||||
| BVU_RS00085 | BVU_0015 | 17374 | 18072 | 232 | c | BVU_RS00085 | response regulator transcription factor | ||
| BVU_RS00090 | BVU_0016 | 18074 | 19642 | 522 | c | BVU_RS00090 | HAMP domain-containing histidine kinase | ||
| BVU_RS00095 | BVU_0017 | 19905 | 22064 | 719 | c | BVU_RS00095 | elongation factor G | ||
| BVU_RS00100 | BVU_0018 | 22250 | 23380 | 376 | hemW | radical SAM family heme chaperone HemW | |||
| BVU_RS00105 | 23518 | 23709 | 63 | BVU_RS00105 | hypothetical protein | ||||
| BVU_RS00110 | BVU_0019 | 23753 | >24991 | BVU_RS00110 | carboxypeptidase-like regulatory domain-containing protein | ||||
| BVU_RS00115 | BVU_0020 | 25013 | 25918 | 301 | c | BVU_RS00115 | IS982 family transposase | ||
| BVU_RS00120 | BVU_0021 | <26027 | 27442 | BVU_RS00120 | TonB-dependent receptor | ||||
| BVU_RS00125 | BVU_0022 | 27449 | 28435 | 328 | BVU_RS00125 | DUF4249 domain-containing protein | |||
| BVU_RS00130 | BVU_0023 | 28548 | 29114 | 188 | BVU_RS00130 | RNA polymerase sigma-70 factor | |||
| BVU_RS00135 | BVU_0024 | 29170 | 29577 | 135 | BVU_RS00135 | hypothetical protein | |||
| BVU_RS00140 | BVU_0025 | 29604 | 30494 | 296 | BVU_RS00140 | FecR domain-containing protein | |||
| BVU_RS00145 | BVU_0026 | 30502 | 33177 | 891 | BVU_RS00145 | carboxypeptidase-like regulatory domain-containing protein | |||
| BVU_RS00150 | BVU_0027 | 33184 | 34215 | 343 | BVU_RS00150 | DUF4249 domain-containing protein | |||
| BVU_RS00155 | BVU_0028 | 34247 | 36184 | 645 | c | BVU_RS00155 | 9-O-acetylesterase | ||
| BVU_RS00160 | BVU_0029 | 36212 | 38257 | 681 | c | BVU_RS00160 | alpha-glucuronidase | ||
| BVU_RS00165 | BVU_0030 | 38254 | 40848 | 864 | c | BVU_RS00165 | glycosyl hydrolase 115 family protein | ||
| BVU_RS00170 | BVU_0031 | 40861 | 42444 | 527 | c | BVU_RS00170 | glycoside hydrolase 43 family protein | ||
| BVU_RS00175 | BVU_0032 | 42453 | 44960 | 835 | c | BVU_RS00175 | family 43 glycosylhydrolase | ||
| BVU_RS00180 | BVU_0033 | 45197 | 49249 | 1350 | BVU_RS00180 | response regulator | |||
| BVU_RS00185 | BVU_0034 | 49721 | 51334 | 537 | c | BVU_RS00185 | IS66 family transposase | ||
| BVU_RS00190 | BVU_0035 | 51403 | 51912 | 169 | c | tnpB | IS66 family insertion sequence element accessory protein TnpB | ||
| BVU_RS00195 | BVU_0037 | 52180 | 54114 | 644 | c | BVU_RS00195 | RagB/SusD family nutrient uptake outer membrane protein | ||
| BVU_RS00200 | BVU_0038 | 54129 | 57200 | 1023 | c | BVU_RS00200 | TonB-dependent receptor | ||
| BVU_RS00205 | BVU_0039 | 57242 | 58978 | 578 | c | BVU_RS00205 | glycoside hydrolase family 43 protein | ||
| BVU_RS00210 | BVU_0040 | 59328 | 60299 | 323 | c | BVU_RS00210 | glycoside hydrolase family 43 protein | ||
| BVU_RS00215 | BVU_0041 | 60312 | 61433 | 373 | c | BVU_RS00215 | endo-1,4-beta-xylanase | ||
| BVU_RS00220 | BVU_0042 | 61646 | 62611 | 321 | BVU_RS00220 | IS110 family transposase | |||
| BVU_RS00225 | BVU_0043 | 62782 | 64275 | 497 | c | BVU_RS00225 | glycoside-pentoside-hexuronide (GPH):cation symporter | ||
| BVU_RS00230 | BVU_0044 | 64603 | 65394 | 263 | c | BVU_RS00230 | glycoside hydrolase family 16 protein | ||
| BVU_RS00235 | BVU_0045 | 65510 | 66415 | 301 | BVU_RS00235 | IS982 family transposase | |||
| BVU_RS00240 | BVU_0046 | 66523 | 67911 | 462 | c | glmM | 5.4.2.10 | phosphoglucosamine mutase | |
| BVU_RS00245 | BVU_0047 | 67908 | 68543 | 211 | c | BVU_RS00245 | DUF4827 domain-containing protein | ||
| BVU_RS00250 | BVU_0048 | 68626 | 69666 | 346 | c | BVU_RS00250 | bifunctional oligoribonuclease/PAP phosphatase NrnA | ||
| BVU_RS00255 | BVU_0049 | 69716 | 71635 | 639 | c | BVU_RS00255 | competence protein ComEC family protein | ||
| BVU_RS00260 | BVU_0050 | 71682 | 72335 | 217 | c | rpe | 5.1.3.1 | ribulose-phosphate 3-epimerase | |
| BVU_RS00265 | BVU_0051 | 72411 | 73706 | 431 | c | BVU_RS00265 | outer membrane beta-barrel protein | ||
| BVU_RS00270 | BVU_0052 | 73709 | 74251 | 180 | c | BVU_RS00270 | sigma-70 family RNA polymerase sigma factor | ||
| BVU_RS00275 | BVU_0053 | 74409 | 75191 | 260 | BVU_RS00275 | NigD-like protein | |||
| BVU_RS00280 | BVU_0054 | 75264 | 76238 | 324 | c | fmt | 2.1.2.9 | methionyl-tRNA formyltransferase | |
| BVU_RS00285 | BVU_0055 | 76252 | 78054 | 600 | c | BVU_RS00285 | chloride channel protein | ||
| BVU_RS00290 | BVU_0056 | 78063 | 78638 | 191 | c | BVU_RS00290 | 2.7.7.87 | L-threonylcarbamoyladenylate synthase | |
| BVU_RS00295 | BVU_0057 | 78805 | 79968 | 387 | c | nagA | 3.5.1.25 | N-acetylglucosamine-6-phosphate deacetylase | |
| BVU_RS00300 | BVU_0058 | 80059 | 83235 | 1058 | c | BVU_RS00300 | efflux RND transporter permease subunit | ||
| BVU_RS00305 | BVU_0059 | 83232 | 84719 | 495 | c | BVU_RS00305 | TolC family protein | ||
| BVU_RS00310 | BVU_0060 | 84706 | 87786 | 1026 | c | BVU_RS00310 | efflux RND transporter permease subunit | ||
| BVU_RS00315 | BVU_0061 | 87791 | 88858 | 355 | c | BVU_RS00315 | efflux RND transporter periplasmic adaptor subunit | ||
| BVU_RS00320 | BVU_0062 | 88911 | 90560 | 549 | c | BVU_RS00320 | O-antigen ligase family protein | ||
| BVU_RS00325 | BVU_0063 | 90563 | 92074 | 503 | c | BVU_RS00325 | transglutaminase-like domain-containing protein | ||
| BVU_RS00330 | BVU_0064 | 92076 | 92978 | 300 | c | lepB | 3.4.21.89 | signal peptidase I | |
| BVU_RS00335 | BVU_0065 | 92987 | 94891 | 634 | c | BVU_RS00335 | hypothetical protein | ||
| BVU_RS00340 | BVU_0066 | 95171 | 96265 | 364 | c | BVU_RS00340 | 6-bladed beta-propeller | ||
| BVU_RS21125 | 96354 | 96602 | 82 | c | BVU_RS21125 | NVEALA domain-containing protein | |||
| BVU_RS00345 | BVU_0068 | 96844 | 97710 | 288 | c | BVU_RS00345 | DUF1573 domain-containing protein | ||
| BVU_RS00350 | 97714 | 97935 | 73 | c | BVU_RS00350 | NVEALA domain-containing protein | |||
| BVU_RS00355 | BVU_0069 | 98189 | 99187 | 332 | BVU_RS00355 | winged helix-turn-helix domain-containing protein | |||
| BVU_RS00360 | BVU_0070 | 99951 | 101030 | 359 | c | BVU_RS00360 | BF3164 family lipoprotein | ||
| BVU_RS00365 | BVU_0071 | 101327 | 102115 | 262 | BVU_RS00365 | DUF108 domain-containing protein | |||
| BVU_RS00370 | BVU_0072 | 102098 | 102982 | 294 | c | BVU_RS00370 | dihydrofolate reductase | ||
| BVU_RS00375 | BVU_0073 | 103089 | 103871 | 260 | BVU_RS00375 | TerB family tellurite resistance protein | |||
| BVU_RS00380 | BVU_0074 | 103946 | 105514 | 522 | c | BVU_RS00380 | peptide chain release factor 3 | ||
| BVU_RS00385 | BVU_0075 | 105521 | 106378 | 285 | c | rfbD | 1.1.1.133 | dTDP-4-dehydrorhamnose reductase | |
| BVU_RS00390 | BVU_0076 | 106393 | 106935 | 180 | c | BVU_RS00390 | DUF4924 family protein | ||
| BVU_RS00395 | BVU_0077 | 107007 | 107666 | 219 | c | BVU_RS00395 | LysE family translocator | ||
| BVU_RS00400 | BVU_0078 | 107817 | 111521 | 1234 | purL | 6.3.5.3 | phosphoribosylformylglycinamidine synthase | ||
| BVU_RS00405 | BVU_0079 | 111599 | 115615 | 1338 | BVU_RS00405 | hybrid sensor histidine kinase/response regulator transcription factor | |||
| BVU_RS00410 | BVU_0080 | 115620 | 116168 | 182 | BVU_RS00410 | chromate transporter | |||
| BVU_RS00415 | BVU_0081 | 116165 | 116737 | 190 | BVU_RS00415 | chromate transporter | |||
| BVU_RS00420 | BVU_0082 | 117024 | 118523 | 499 | c | BVU_RS00420 | family 10 glycosylhydrolase | ||
| BVU_RS00425 | BVU_0083 | 118605 | 121406 | 933 | uvrA | 3.1.25.- | excinuclease ABC subunit UvrA | ||
| BVU_RS00430 | BVU_0084 | 121652 | 122683 | 343 | BVU_RS00430 | endonuclease/exonuclease/phosphatase family protein | |||
| BVU_RS00435 | BVU_0085 | 122740 | 125046 | 768 | BVU_RS00435 | family 20 glycosylhydrolase | |||
| BVU_RS00440 | BVU_0086 | 125156 | 125647 | 163 | c | BVU_RS00440 | hypothetical protein | ||
| BVU_RS00445 | BVU_0087 | 125666 | 125887 | 73 | c | BVU_RS00445 | hypothetical protein | ||
| BVU_RS00450 | BVU_0088 | 125874 | 127304 | 476 | c | BVU_RS00450 | carbon starvation protein A | ||
| BVU_RS00455 | BVU_0089 | 127383 | 129062 | 559 | BVU_RS00455 | family 10 glycosylhydrolase | |||
| BVU_RS00465 | BVU_0090 | 129411 | 130409 | 332 | c | BVU_RS00465 | virulence RhuM family protein | ||
| BVU_RS00470 | BVU_0091 | 130412 | 131005 | 197 | c | BVU_RS00470 | hypothetical protein | ||
| BVU_RS00475 | BVU_0092 | 132242 | 133411 | 389 | BVU_RS00475 | AIR synthase-related protein | |||
| BVU_RS00480 | BVU_0094 | 133654 | 134769 | 371 | prfA | peptide chain release factor 1 | |||
| BVU_RS00485 | BVU_0095 | 134806 | 135624 | 272 | pyrF | 4.1.1.23 | orotidine-5'-phosphate decarboxylase | ||
| BVU_RS00490 | BVU_0096 | 135713 | 136948 | 411 | BVU_RS00490 | HD domain-containing protein | |||
| BVU_RS00495 | BVU_0097 | 137081 | 138121 | 346 | lpxD | 2.3.1.191 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase |
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| ABR39658.1 | BVU_1986 | BVU_RS10065 | enoyl-[acyl-carrier-protein] reductase [Phocaeicola vulgatus ATCC 8482] | 10.25 | 15.25 | 20 | |||
| ABR39660.1 | BVU_1988 | BVU_RS10075 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0.75 | 0 | 0.5 | |||
| ABR39663.1 | BVU_1991 | BVU_RS10090 | dipeptidyl peptidase IV [Phocaeicola vulgatus ATCC 8482] | 0 | 1.25 | 4.5 | |||
| ABR39665.1 | BVU_1993 | BVU_RS10100 | flavoprotein [Phocaeicola vulgatus ATCC 8482] | 1.5 | 0 | 0.75 | |||
| ABR39666.1 | BVU_1994 | BVU_RS10105 | putative transport protein [Phocaeicola vulgatus ATCC 8482] | 19.25 | 15.25 | 17.75 | |||
| ABR39669.1 | BVU_1997 | BVU_RS10120 | putative integral membrane protein [Phocaeicola vulgatus ATCC 8482] | 1 | 0 | 0 | |||
| ABR39671.1 | BVU_2004 | BVU_RS10160 | 2-isopropylmalate synthase [Phocaeicola vulgatus ATCC 8482] | 9 | 10.75 | 7.5 | |||
| ABR39672.1 | BVU_2005 | BVU_RS10165 | 3-isopropylmalate dehydratase large subunit [Phocaeicola vulgatus ATCC 8482] | 6.75 | 10 | 5.5 | |||
| ABR39673.1 | BVU_2006 | BVU_RS10170 | 3-isopropylmalate dehydratase small subunit [Phocaeicola vulgatus ATCC 8482] | 1 | 0 | 0 | |||
| ABR39674.1 | BVU_2007 | BVU_RS10175 | 2-isopropylmalate synthase [Phocaeicola vulgatus ATCC 8482] | 0 | 0.75 | 0 | |||
| ABR39675.1 | BVU_2008 | BVU_RS10180 | 3-isopropylmalate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 2.75 | 2.75 | 1.5 | |||
| ABR39676.1 | BVU_2009 | BVU_RS10185 | putative thiol-disulfide oxidoreductase [Phocaeicola vulgatus ATCC 8482] | 8.25 | 2.25 | 3.25 | |||
| ABR39681.1 | BVU_2014 | BVU_RS10210 | transcriptional regulator [Phocaeicola vulgatus ATCC 8482] | 73 | 116.5 | 106.75 | |||
| ABR39682.1 | BVU_2015 | BVU_RS10215 | putative dipeptidyl-peptidase III [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1 | |||
| ABR39685.1 | BVU_2018 | BVU_RS10230 | adenylosuccinate synthetase [Phocaeicola vulgatus ATCC 8482] | 10.25 | 12.25 | 13.75 | |||
| ABR39687.1 | BVU_2020 | BVU_RS10240 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 21.25 | 21 | 19.75 | |||
| ABR39688.1 | BVU_2021 | BVU_RS10245 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 5.25 | 4.75 | 4.25 | |||
| ABR39698.1 | BVU_2033 | BVU_RS10295 | putative endothelin-converting enzyme [Phocaeicola vulgatus ATCC 8482] | 33 | 31 | 17.75 | |||
| ABR39704.1 | BVU_2039 | BVU_RS10325 | putative nitroreductase [Phocaeicola vulgatus ATCC 8482] | 3 | 1.75 | 1 | |||
| ABR39710.1 | BVU_2045 | BVU_RS10350 | putative TonB-dependent outer membrane protein [Phocaeicola vulgatus ATCC 8482] | 4 | 2.25 | 4.25 | |||
| ABR39715.1 | BVU_2050 | BVU_RS10375 | putative aspartokinase I-homoserine dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 26 | 21.25 | 8.75 | |||
| ABR39716.1 | BVU_2051 | BVU_RS10380 | phosphoglycerate mutase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0.75 | |||
| ABR39717.1 | BVU_2052 | BVU_RS10385 | putative threonine synthase [Phocaeicola vulgatus ATCC 8482] | 3 | 10.75 | 8.75 | |||
| ABR39720.1 | BVU_2055 | BVU_RS10405 | putative iron-related ABC transport periplasmic binding protein [Phocaeicola vulgatus ATCC 8482] | 1.25 | 0 | 0 | |||
| ABR39721.1 | BVU_2056 | BVU_RS10410 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 132.75 | 99 | 89.5 | |||
| ABR39722.1 | BVU_2057 | BVU_RS10415 | outer membrane vitamin B12 receptor protein [Phocaeicola vulgatus ATCC 8482] | 6.5 | 0.75 | 5 | |||
| ABR39725.1 | BVU_2060 | BVU_RS10430 | chorismate mutase/prephenate dehydratase [Phocaeicola vulgatus ATCC 8482] | 1.25 | 3 | 3 | |||
| ABR39726.1 | BVU_2061 | BVU_RS10435 | putative phospho-2-dehydro-3-deoxyheptonate aldolase [Phocaeicola vulgatus ATCC 8482] | 7.25 | 6.25 | 5.75 | |||
| ABR39738.1 | BVU_2073 | BVU_RS10495 | Xaa-Pro aminopeptidase [Phocaeicola vulgatus ATCC 8482] | 1.5 | 3 | 4.25 | |||
| ABR39741.1 | BVU_2078 | BVU_RS10515 | HD superfamily hydrolase [Phocaeicola vulgatus ATCC 8482] | 6.25 | 3.5 | 1.5 | |||
| ABR39747.1 | BVU_2085 | BVU_RS10550 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 1.25 | 0 | |||
| ABR39748.1 | BVU_2086 | BVU_RS10555 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1.25 | 0 | 0 | |||
| ABR39752.1 | BVU_2090 | BVU_RS10575 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1.25 | 3 | 6.25 | |||
| ABR39754.1 | BVU_2092 | BVU_RS10585 | putative exported cytochrome C biogenesis-related protein [Phocaeicola vulgatus ATCC 8482] | 2.25 | 0 | 0 | |||
| ABR39759.1 | BVU_2098 | BVU_RS10610 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1.25 | |||
| ABR39763.1 | BVU_2102 | BVU_RS10620 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 2 | 0 | 0 | |||
| ABR39819.1 | BVU_2158 | BVU_RS10885 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 1 | 0 | 0 | |||
| ABR39848.1 | BVU_2187 | BVU_RS11015 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 10.75 | 10.5 | 8.25 | |||
| ABR39849.1 | BVU_2188 | BVU_RS11020 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 10.5 | 9.25 | 8.75 | |||
| ABR39867.1 | BVU_2206 | BVU_RS11105 | phosphoglycerate kinase [Phocaeicola vulgatus ATCC 8482] | 30.75 | 49.25 | 43.25 | |||
| ABR39870.1 | BVU_2209 | BVU_RS11120 | glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482] | 2.25 | 0 | 0 | |||
| ABR39873.1 | BVU_2212 | BVU_RS11135 | putative outer membrane protein precursor [Phocaeicola vulgatus ATCC 8482] | 22.5 | 14.25 | 13.25 | |||
| ABR39875.1 | BVU_2214 | BVU_RS11145 | putative signal recognition protein [Phocaeicola vulgatus ATCC 8482] | 5.5 | 9.25 | 11.75 | |||
| ABR39876.1 | BVU_2215 | BVU_RS11150 | methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 1.75 | |||
| ABR39897.1 | BVU_2237 | BVU_RS11260 | phenylalanyl-tRNA synthetase alpha chain [Phocaeicola vulgatus ATCC 8482] | 0 | 1.5 | 1.5 | |||
| ABR39909.1 | BVU_2250 | BVU_RS11325 | putative septum formation initiator-related protein [Phocaeicola vulgatus ATCC 8482] | 2.25 | 0 | 0.5 | |||
| ABR39912.1 | BVU_2253 | BVU_RS11340 | conserved hypothetical protein, putative exported protein [Phocaeicola vulgatus ATCC 8482] | 0.75 | 0 | 2 | |||
| ABR39913.1 | BVU_2254 | BVU_RS11345 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0.75 | 0 | 0 | |||
| ABR39917.1 | BVU_2258 | BVU_RS11365 | dihydroorotase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1.25 | |||
| ABR39918.1 | BVU_2259 | BVU_RS11370 | glycosyltransferase family 2, candidate beta-glycosyltransferase [Phocaeicola vulgatus ATCC 8482] | 2.25 | 0.75 | 0.5 | |||
| ABR39919.1 | BVU_2260 | BVU_RS11375 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 78.25 | 134.5 | 113 | |||
| ABR39920.1 | BVU_2261 | BVU_RS11380 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 31.25 | 50 | 56.5 | |||
| ABR39922.1 | BVU_2263 | BVU_RS11390 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1.75 | 1.75 | 1.75 | |||
| ABR39923.1 | BVU_2264 | BVU_RS11395 | putative aspartate decarboxylase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1.25 | |||
| ABR39944.1 | BVU_2285 | BVU_RS11500 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 3.5 | 3.75 | |||
| ABR39945.1 | BVU_2286 | BVU_RS11505 | phosphofructokinase [Phocaeicola vulgatus ATCC 8482] | 34 | 41.5 | 27.25 | |||
| ABR39963.1 | BVU_2304 | BVU_RS11595 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 10.75 | 5 | 9.5 | |||
| ABR39964.1 | BVU_2305 | BVU_RS11600 | conserved hypothetical exported protein [Phocaeicola vulgatus ATCC 8482] | 112.5 | 79 | 85.75 | |||
| ABR39967.1 | BVU_2308 | BVU_RS11615 | glutamine ABC transporter, periplasmic glutamine-binding protein [Phocaeicola vulgatus ATCC 8482] | 0.75 | 0 | 0 | |||
| ABR39968.1 | BVU_2309 | BVU_RS11620 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 2 | 0 | 0 | |||
| ABR39969.1 | BVU_2310 | BVU_RS11625 | ketoisovalerate oxidoreductase subunit VorA [Phocaeicola vulgatus ATCC 8482] | 0 | 4 | 2.75 | |||
| ABR39972.1 | BVU_2313 | BVU_RS11635 | ketoisovalerate oxidoreductase subunit VorB [Phocaeicola vulgatus ATCC 8482] | 1 | 1 | 2.75 | |||
| ABR39973.1 | BVU_2314 | BVU_RS11640 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 2.5 | |||
| ABR39977.1 | BVU_2318 | BVU_RS11660 | transketolase [Phocaeicola vulgatus ATCC 8482] | 16.5 | 24 | 26.25 | |||
| ABR39984.1 | BVU_2325 | BVU_RS11695 | galactokinase [Phocaeicola vulgatus ATCC 8482] | 8.5 | 15 | 11.5 | |||
| ABR39989.1 | BVU_2330 | BVU_RS11720 | GrpE protein [Phocaeicola vulgatus ATCC 8482] | 1.25 | 4 | 5.5 | |||
| ABR39994.1 | BVU_2335 | BVU_RS11745 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0.75 | |||
| ABR39995.1 | BVU_2336 | BVU_RS11750 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 15.5 | 5 | 15.75 | |||
| ABR39996.1 | BVU_2337 | BVU_RS11755 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 2.25 | 2.75 | 4.25 | |||
| ABR39999.1 | BVU_2340 | BVU_RS11770 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 15.25 | 6.25 | 10.25 | |||
| ABR40017.1 | BVU_2358 | BVU_RS11865 | uridine kinase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1 | |||
| ABR40018.1 | BVU_2359 | BVU_RS11870 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1 | 1.5 | 4.75 | |||
| ABR40020.1 | BVU_2361 | BVU_RS11880 | ATP phosphoribosyltransferase [Phocaeicola vulgatus ATCC 8482] | 0 | 0.75 | 0 | |||
| ABR40026.1 | BVU_2367 | BVU_RS11910 | putative rubrerythrin [Phocaeicola vulgatus ATCC 8482] | 5.5 | 7 | 8 | |||
| ABR40027.1 | BVU_2368 | BVU_RS11915 | thioredoxin [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1.25 | |||
| ABR40028.1 | BVU_2369 | BVU_RS11920 | thioredoxin [Phocaeicola vulgatus ATCC 8482] | 0 | 2 | 2.5 | |||
| ABR40029.1 | BVU_2370 | BVU_RS11925 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 23.75 | 19.75 | 20.5 | |||
| ABR40033.1 | BVU_2374 | BVU_RS11945 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1.5 | 2 | 2.25 | |||
| ABR40034.1 | BVU_2375 | BVU_RS11950 | nicotinate-nucleotide pyrophosphorylase [Phocaeicola vulgatus ATCC 8482] | 5.25 | 10.25 | 6 | |||
| ABR40036.1 | BVU_2377 | BVU_RS11960 | RecA [Phocaeicola vulgatus ATCC 8482] | 2.75 | 6.75 | 6.75 | |||
| ABR40037.1 | BVU_2378 | BVU_RS11965 | putative bacterioferritin co-migratory protein [Phocaeicola vulgatus ATCC 8482] | 1.5 | 4.25 | 5 | |||
| ABR40038.1 | BVU_2379 | BVU_RS11970 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 8.75 | 11 | 10.5 | |||
| ABR40040.1 | BVU_2381 | BVU_RS11980 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 42.75 | 30 | 27.75 | |||
| ABR40041.1 | BVU_2382 | BVU_RS11985 | chaperone protein DnaK [Phocaeicola vulgatus ATCC 8482] | 26.75 | 62 | 78.25 | |||
| ABR40048.1 | BVU_2389 | BVU_RS12020 | polysaccharide export outer membrane protein [Phocaeicola vulgatus ATCC 8482] | 1.25 | 0 | 1.5 | |||
| ABR40076.1 | BVU_2417 | BVU_RS12175 | dihydroxynapthoic acid synthetase [Phocaeicola vulgatus ATCC 8482] | 0.5 | 2.25 | 1.5 | |||
| ABR40077.1 | BVU_2418 | BVU_RS12180 | 2-oxoglutarate decarboxylase [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 0 | |||
| ABR40090.1 | BVU_2431 | BVU_RS12240 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0.75 | 3.25 | |||
| ABR40091.1 | BVU_2432 | BVU_RS12245 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 2.75 | |||
| ABR40097.1 | BVU_2439 | BVU_RS12280 | tryptophan synthase beta chain [Phocaeicola vulgatus ATCC 8482] | 0 | 2.25 | 0 | |||
| ABR40099.1 | BVU_2441 | BVU_RS12290 | putative K+ uptake system protein [Phocaeicola vulgatus ATCC 8482] | 0 | 2.5 | 1.25 | |||
| ABR40100.1 | BVU_2442 | BVU_RS12295 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 2 | 0 | 1.25 | |||
| ABR40101.1 | BVU_2443 | BVU_RS12300 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 2 | 0 | |||
| ABR40132.1 | BVU_2475 | BVU_RS12460 | conserved hypothetical protein, putative antigen PgaA [Phocaeicola vulgatus ATCC 8482] | 0 | 0.75 | 0 | |||
| ABR40136.1 | BVU_2479 | BVU_RS12485 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1 | 0 | 0 | |||
| ABR40143.1 | BVU_2486 | BVU_RS12520 | putative short-chain dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 0 | 1.5 | 2.5 | |||
| ABR40145.1 | BVU_2488 | BVU_RS12530 | oxaloacetate decarboxylase beta chain [Phocaeicola vulgatus ATCC 8482] | 1.25 | 0 | 0 | |||
| ABR40147.1 | BVU_2490 | BVU_RS12540 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 4.5 | 2.75 | 1.75 | |||
| ABR40148.1 | BVU_2491 | BVU_RS12545 | propionyl-CoA carboxylase beta chain [Phocaeicola vulgatus ATCC 8482] | 8.5 | 15.25 | 12.25 | |||
| ABR40149.1 | BVU_2492 | BVU_RS12550 | lactoyl gluthatione lyase [Phocaeicola vulgatus ATCC 8482] | 1 | 6.75 | 7 |
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| Name | Locus tag | Function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
| glycine biosynthesis I | |||||||||
| GlyA | BVU_RS16795 | serine hydroxymethyltransferase | 7 | 18 | 18 | ||||
| glycine biosynthesis II | |||||||||
| GcvP | BVU_RS15125 | glycine dehydrogenase | 0 | 2 | 0 | ||||
| L-alanine biosynthesis I | |||||||||
| - | BVU_RS06885 | cysteine desulfurase | 0 | 0 | 1 | ||||
| L-arginine biosynthesis (via L-ornithine) | |||||||||
| ArgB | - | - | - | - | - | ||||
| ArgB | BVU_RS06775 | putative acetylglutamate kinase | 0 | 0 | 1 | ||||
| - | BVU_RS03000 | N-acetyl-gamma-glutamyl-phosphate reductase | 3 | 2 | 2 | ||||
| - | BVU_RS02995 | acetylornithine aminotransferase | 3 | 4 | 5 | ||||
| - | BVU_RS07505 | - | - | - | - | ||||
| - | BVU_RS20030 | carbamyl phosphate synthetase | 28 | 13 | 3 | ||||
| - | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2 | 5 | 4 | ||||
| - | BVU_RS20255 | - | - | - | - | ||||
| - | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
| - | BVU_RS02805 | ornithine carbamoyltransferase | 3 | 3 | 4 | ||||
| - | BVU_RS03005 | argininosuccinate synthase | 6 | 9 | 7 | ||||
| ArgH | - | - | - | - | - | ||||
| L-asparagine biosynthesis I | |||||||||
| AsnB | - | asparagine synthase B | - | - | - | ||||
| L-asparagine biosynthesis II | |||||||||
| - | BVU_RS20790 | asparagine synthase A | 6 | 6 | 0 | ||||
| L-aspartate biosynthesis | |||||||||
| - | BVU_RS11395 | aspartate 4-decarboxylase | 0 | 0 | 1 | ||||
| L-cystein biosynthesis I | |||||||||
| - | BVU_RS05520 | serine acetyltransferase | 0 | 0 | 1 | ||||
| CysK | BVU_RS02055 | cysteine synthase A | 0 | 2 | 3 | ||||
| L-cystein biosynthesis IV | |||||||||
| - | BVU_RS05985 | S-adenosylmethionine synthase | 3 | 3 | 3 | ||||
| - | BVU_RS07105 | 2.1.1.- / S-adenosyl-methyltransferase | 0 | 0 | 2 | ||||
| - | BVU_RS04530 | S-adenosylhomocysteine nucleosidase | 1 | 2 | 1 | ||||
| - | BVU_RS04535 | S-ribosylhomocysteine lyase | 0 | 0 | 2 | ||||
| - | - | 4.2.1.22 | - | - | - | ||||
| - | BVU_RS10335 | 2.5.1.48 / homoserine O-succinyltransferase | 0 | 0 | 1 | ||||
| L-glutamate biosynthesis II | |||||||||
| - | BVU_RS01250 | glutamate dehydrogenase | 77 | 66 | 43 | ||||
| - | BVU_RS01255 | glutamate dehydrogenase | 23 | 17 | 10 | ||||
| L-glutamate biosynthesis III | |||||||||
| BVU_RS01275 | glutamate dehydrogenase | 0 | 10 | 12 | |||||
| - | BVU_RS01250 | glutamate dehydrogenase | 77 | 66 | 43 | ||||
| L-glutamine biosynthesis I | |||||||||
| - | BVU_RS17720 | glutamine synthetase | 0 | 1 | 0 | ||||
| - | BVU_RS17970 | glutamine synthetase | 10 | 13 | 8 | ||||
| - | BVU_RS20050 | glutamine synthetase | - | - | - | ||||
| L-histidine biosynthesis | |||||||||
| - | BVU_RS11880 | ATP phosphoribosyltransferase | 0 | 1 | 0 | ||||
| - | BVU_RS19330 | - | - | - | - | ||||
| HisA | BVU_RS19320 | 5.3.1.16 | 4 | 3 | 4 | ||||
| HisH | BVU_RS20510 | 4.3.2.- | 1 | 0 | 0 | ||||
| HisB | BVU_RS11895 | histidinol-phosphate aminotransferase | - | - | - | ||||
| HisC | BVU_RS11890 | 2.6.1.9 | - | - | - | ||||
| - | BVU_RS17605 | - | - | - | |||||
| HisD | BVU_RS11885 | histidinal dehydrogenase | - | - | - | ||||
| L-homocysteine biosynthesis | |||||||||
| - | BVU_RS10335 | homoserine O-succinyltransferase | 0 | 0 | 1 | ||||
| - | BVU_RS03900 | O-acetylhomoserine (thiol)-lyase | 4 | 2 | 1 | ||||
| - | BVU_RS13630 | O-acetylhomoserine (thiol)-lyase | 7 | 4 | 7 | ||||
| L-homoserine biosynthesis | |||||||||
| - | BVU_RS10375 | putative aspartokinase I-homoserine dehydrogenase | 26 | 21 | 9 | ||||
| - | BVU_RS19340 | aspartokinase | 13 | 11 | 8 | ||||
| - | BVU_RS01045 | aspartate-semialdehyde dehydrogenase | 22 | 33 | 31 | ||||
| L-isoleucine biosynthesis I | |||||||||
| - | BVU_RS19515 | threonine ammonia-lyase | - | - | - | ||||
| IlvB | BVU_RS12865 | acetolactate synthase large subunit | 2 | 0 | 0 | ||||
| IlvN | BVU_RS12870 | acetohydroxyacid synthase small subunit | 9 | 13 | 14 | ||||
| IlvC | BVU_RS12880 | ketol-acid reductoisomerase | 22 | 24 | 26 | ||||
| - | BVU_RS12860 | dihydroxy-acid dehydratase | 6 | 6 | 5 | ||||
| - | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
| L-isoleucine biosynthesis IV | |||||||||
| - | BVU_RS02915 | propanoate:CoA ligase (AMP-forming) | - | - | - | ||||
| - | BVU_RS00045 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| - | BVU_RS19410 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| - | BVU_RS15255 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| - | BVU_RS07510 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| - | BVU_RS04995 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| - | BVU_RS04960 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| IlvB | BVU_RS12865 | acetolactate synthase large subunit | 2 | 0 | 0 | ||||
| IlvN | BVU_RS12870 | acetohydroxyacid synthase small subunit | 9 | 13 | 14 | ||||
| IlvC | BVU_RS12880 | ketol-acid reductoisomerase | 22 | 24 | 26 | ||||
| - | BVU_RS12860 | dihydroxy-acid dehydratase | 6 | 6 | 5 | ||||
| - | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
| L-leucine biosynthesis | |||||||||
| - | BVU_RS10160 | 2-isopropylmalate synthase | 9 | 11 | 8 | ||||
| - | BVU_RS10175 | 2-isopropylmalate synthase | 0 | 1 | 0 | ||||
| LeuC | BVU_RS10165 | 3-isopropylmalate dehydratase large subunit | 7 | 10 | 6 | ||||
| LeuD | BVU_RS10170 | 3-isopropylmalate dehydratase small subunit | 1 | 0 | 0 | ||||
| LeuB | BVU_RS10180 | 3-isopropylmalate dehydrogenase | 3 | 3 | 2 | ||||
| - | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
| L-lysine biosynthesis III | |||||||||
| - | BVU_RS10375 | putative aspartokinase I-homoserine dehydrogenase | 26 | 21 | 6 | ||||
| - | BVU_RS19340 | aspartokinase | 13 | 11 | 8 | ||||
| - | BVU_RS01045 | aspartate-semialdehyde dehydrogenase | 22 | 33 | 31 | ||||
| - | BVU_RS16620 | putative dihydrodipicolinate synthase | 1 | 4 | 3 | ||||
| DapB | - | - | - | - | - | ||||
| - | BVU_RS08435 | putative oxidoreductase | 22 | 40 | 68 | ||||
| LysA | BVU_RS19345 | diaminopimelate decarboxylase | 2 | 3 | 1 | ||||
| - | BVU_RS20260 | - | - | - | - | ||||
| L-lysine biosynthesis VI |
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| Name | Locus tag | function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
| 5-aminoimidazole ribonucleotide biosynthesis II | |||||||||
| - | BVU_RS04370 | - | - | - | - | ||||
| - | BVU_RS19210 | - | - | - | - | ||||
| - | BVU_RS20040 | - | - | - | - | ||||
| - | BVU_RS05540 | phosphoribosylamine--glycine ligase | 3 | 3 | 3 | ||||
| - | BVU_RS13930 | phosphoribosylglycinamide formyltransferase 2 | 1 | 6 | 5 | ||||
| - | BVU_RS00400 | putative phosphoribosylformylglycinamidine synthase | 17 | 10 | 1 | ||||
| - | BVU_RS00475 | putative phosphoribosylformylglycinamidine cyclo-ligase | 1 | 2 | 1 | ||||
| adenine and adenosine salvage I | |||||||||
| - | BVU_RS08145 | purine nucleoside phosphorylase I | 0 | 4 | 7 | ||||
| - | BVU_RS06135 | adenine phosphoribosyltransferase | 1 | 1 | 2 | ||||
| adenine and adenosine salvage IV | |||||||||
| - | BVU_RS04245 | - | - | - | - | ||||
| adenosine deoxyriboculeotide de novo synthesis | |||||||||
| - | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
| - | BVU_RS15620 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| CMP phosphorylation | |||||||||
| - | BVU_RS09815 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| guanine and guanosin salvage | |||||||||
| - | BVU_RS08145 | purine nucleoside phosphorylase I | 0 | 4 | 7 | ||||
| Hpt | BVU_RS08545 | putative hypoxanthine guanine phosphoribosyltransferase | 0 | 3 | 5 | ||||
| Xpt | BVU_RS12750 | xanthine phosphoribosyltransferase | 1 | 0 | 0 | ||||
| guanosine deoxyriboculeotide de novo synthesis | |||||||||
| - | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
| - | BVU_RS15620 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| pyrimidine deoxyribonucleosides salvage | |||||||||
| - | BVU_RS09765 | cytidine/deoxycytidylate deaminase | 0 | 2 | 3 | ||||
| - | BVU_RS09305 | - | - | - | - | ||||
| - | BVU_RS09885 | putative thymidylate synthase B | 1 | 0 | 1 | ||||
| - | BVU_RS09305 | - | - | - | - | ||||
| - | - | 2.7.1.74 | - | - | - | ||||
| pyrimidine deoxyribonucleostide phosphorylation | |||||||||
| - | BVU_RS09815 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| - | - | 2.7.4.9/12/13; | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| pyrimidine deoxyriboculeotide de novo synthesis | |||||||||
| - | - | 3.6.1.15; | - | - | - | ||||
| BVU_RS00015 | putative ribonucleoside reductase | 8 | 5.75 | 2 | |||||
| - | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
| - | BVU_RS15620 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| - | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
| - | BVU_RS15620 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| - | BVU_RS07130 | deoxyuridine 5'-triphosphate nucleotidohydrolase | 1 | 0 | 1 | ||||
| - | BVU_RS01730 | - | - | - | - | ||||
| - | BVU_RS12965 | - | - | - | - | ||||
| - | BVU_RS09885 | putative thymidylate synthase B | 1 | 0 | 1 | ||||
| - | - | 2.7.4.9/12/13; | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| pyrimidine nucleobases salvage I | |||||||||
| - | BVU_RS04955 | - | - | - | - | ||||
| - | BVU_RS04990 | - | - | - | - | ||||
| pyrimidine ribonucleosides salvage I | |||||||||
| BVU_RS16775 | cytidine/deoxycytidylate deaminase | 0 | 2 | 3 | |||||
| - | BVU_RS11865 | uridine kinase | 0 | 0 | 1 | ||||
| - | - | 2.7.1.213; | - | - | - | ||||
| UMP biosynthesis II | |||||||||
| - | BVU_RS20030 | carbamoyl phosphate synthetase | 28.25 | 13.25 | 3.25 | ||||
| - | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2.25 | 5.25 | 4.25 | ||||
| - | BVU_RS20255 | - | - | - | - | ||||
| - | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
| PyrB | - | aspartate carbamoyltransferase catalytic chain | 0 | 2 | 0 | ||||
| - | BVU_RS16780 | aspartate carbamoyltransferase regulatory chain | 1 | 2 | 3 | ||||
| - | BVU_RS11365 | dihydroorotase | 0 | 0 | 1 | ||||
| - | BVU_RS19405 | putative dihydroorotate dehydrogenase | 0 | 3 | 2 | ||||
| - | BVU_RS04365 | orotate phosphoribosyltransferase | 13 | 36 | 48 | ||||
| PyrF | BVU_RS00485 | orotidine 5'-phosphate decarboxylase | 0 | 0 | 1.5 | ||||
| UMP biosynthesis III | |||||||||
| - | BVU_RS20030 | carbamyl phosphate synthetase | 28.25 | 13.25 | 3.25 | ||||
| - | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2.25 | 5.25 | 4.25 | ||||
| - | BVU_RS20255 | - | - | - | - | ||||
| - | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
| PyrB | BVU_RS16775 | aspartate carbamoyltransferase catalytic chain | 0 | 2 | 0 | ||||
| - | BVU_RS16780 | aspartate carbamoyltransferase regulatory chain | 1 | 2 | 3 | ||||
| - | BVU_RS11365 | dihydroorotase | 0 | 0 | 1 | ||||
| - | BVU_RS16640 | - | - | - | - | ||||
| - | BVU_RS04365 | orotate phosphoribosyltransferase | 13 | 36 | 48 | ||||
| PyrF | BVU_RS00485 | orotidine 5'-phosphate decarboxylase | 0 | 0 | 1.5 | ||||
| UTP and CTP de novo biosynthesis | |||||||||
| - | BVU_RS09490 | uridylate kinase | 1 | 1 | 1 | ||||
| - | BVU_RS09815 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| - | BVU_RS16855 | CTP synthase | 9.5 | 8.25 | 3.25 |
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| Name | Locustag | function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
| fatty acid biosynthesis initiation I | |||||||||
| AccC | - | - | - | - | - | ||||
| FabD | BVU_RS19990 | malonyl CoA-acyl carrier protein transacylase | 5 | 9 | 6 | ||||
| - | BVU_RS02315 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 12 | 6 | 2 | ||||
| fatty acid elongation -- saturation | |||||||||
| - | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
| FabG | - | - | - | - | |||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| FabG | BVU_RS10065 | enoyl-[acyl-carrier-protein] reductase | 10 | 15 | 20 | ||||
| FabG | - | - | - | - | - | ||||
| - | BVU_RS05130 | - | - | - | - | ||||
| palmitate biosynthesis II | |||||||||
| - | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
| FabG | - | - | - | - | |||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| FabG | - | - | - | - | - | ||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS12875 | - | - | - | - | ||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS12875 | - | - | - | - | ||||
| - | BVU_RS00045 | - | - | - | - | ||||
| - | BVU_RS19410 | - | - | - | - | ||||
| - | BVU_RS15255 | - | - | - | - | ||||
| - | BVU_RS07510 | - | - | - | - | ||||
| lipid IVA biosynthesis | |||||||||
| - | BVU_RS00505 | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | 0 | 1.75 | 3.5 | ||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| - | BVU_RS00495 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | 1 | 2.25 | 0.75 | ||||
| - | BVU_RS15065 | - | - | - | - | ||||
| - | BVU_RS02680 | - | - | - | - | ||||
| LpxB | BVU_RS09710 | - | - | - | - | ||||
| LpxK | BVU_RS08150 | - | - | - | - | ||||
| palmitoleate biosynthesis I | |||||||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| FabG | - | - | - | - | |||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS12875 | - | - | - | - | ||||
| CDP-diacylglycerol biosynthesis I | |||||||||
| - | BVU_RS02595 | - | - | - | - | ||||
| - | - | 2.3.1.15; | - | - | - | ||||
| - | BVU_RS11350 | - | - | - | - | ||||
| - | BVU_RS09720 | - | - | - | - | ||||
| phophatidylethanolamine biosynthesis I | |||||||||
| - | BVU_RS09540 | - | - | - | - | ||||
| - | BVU_RS09545 | phosphatidylserine decarboxylase | 0.75 | 0 | 0 | ||||
| gondoate biosynthesis I (anaerobic) | |||||||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| FabG | - | - | - | - | |||||
| stearate biosynthesis II | |||||||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| FabG | - | - | - | - | - | ||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS12875 | - | - | - | - | ||||
| - | BVU_RS00045 | - | - | - | - | ||||
| - | BVU_RS19410 | - | - | - | - | ||||
| - | BVU_RS15255 | - | - | - | - | ||||
| - | BVU_RS07510 | - | - | - | - | ||||
| peptidoglycan biosynthesis I | |||||||||
| MurA | - | - | - | - | - | ||||
| - | BVU_RS11270 | - | - | - | - | ||||
| - | BVU_RS07065 | - | - | - | - | ||||
| Murl | - | - | - | - | - | ||||
| MurD | - | - | - | - | - | ||||
| - | BVU_RS07090 | - | - | - | - | ||||
| - | BVU_RS02785 | D-alanine--D-alanine ligase | 0 | 0.75 | 0 | ||||
| - | BVU_RS08970 | - | - | - | - | ||||
| - | BVU_RS02365 | - | - | - | - | ||||
| MraY | - | 2.7.8.13; | - | - | - | ||||
| MurG | - | - | - | - | - |
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| Name | average 1/2ODmax | average ODmax | average ODstat | |||||||||||||||||||||
| F23-30 | ||||||||||||||||||||||||
| 3,6-dimethyl-2,5-piperazinedione | 8265378.743 | 1.099494342E7 | 1.384175322E7 | |||||||||||||||||||||
| (4-hydroxyphenyl)acetate | 0 | 1420991.782 | 4245243.065 | |||||||||||||||||||||
| adenosine | 1.914616041E8 | 2.049224602E8 | 4.368890932E7 | |||||||||||||||||||||
| AMP | 0 | 2.542298812E7 | 0 | |||||||||||||||||||||
| alanine | 3.048153434E8 | 1023598628 | 4.595991406E8 | |||||||||||||||||||||
| beta-Alanine | 1.076268625E7 | 1.472702677E7 | 1.153525451E7 | |||||||||||||||||||||
| arabinose | 7.267107188E7 | 5.558992709E7 | 0 | |||||||||||||||||||||
| asparagine | 9194929.216 | 1.065020677E8 | 4.63419194E7 | |||||||||||||||||||||
| aspartate | 1336480732 | 2.561961123E9 | 1979001674 | |||||||||||||||||||||
| N-acetyl-aspartate | 1.430374177E7 | 1.358601966E7 | 1.834177997E7 | |||||||||||||||||||||
| 4-hydroxybutanoate | 4341238.489 | 1.611925834E7 | 3.671945556E7 | |||||||||||||||||||||
| citraconic acid | 3044486.818 | 2.246157863E7 | 3.030884869E7 | |||||||||||||||||||||
| citrate | 2.312309536E7 | 137330468 | 8.736149751E7 | |||||||||||||||||||||
| cytosine | 2.809813669E7 | 8.62736557E7 | 3.474310703E7 | |||||||||||||||||||||
| erythritol | 5054322.738 | 1.778982275E7 | 1.638248006E7 | |||||||||||||||||||||
| erythronic acid | 2.272937928E7 | 3.634991079E7 | 2.688512397E7 | |||||||||||||||||||||
| erythrose | 2.787263181E7 | 5.955155986E7 | 6765894.403 | |||||||||||||||||||||
| ethanolamine | 4.969040726E7 | 1.530971721E8 | 3.033750008E8 | |||||||||||||||||||||
| ethanolaminephosphate | 2.546777747E7 | 2.813185905E7 | 9443448.536 | |||||||||||||||||||||
| fructose | 1.850946281E8 | 1.257242206E8 | 0 | |||||||||||||||||||||
| fructose-6-phosphate | 2.849009979E8 | 1.242458087E8 | 0 | |||||||||||||||||||||
| fumarate | 2.404458386E8 | 5.637002336E8 | 6.521516803E8 | |||||||||||||||||||||
| gluconic-acid | 2.568004851E8 | 1.181679281E8 | 9550974.311 | |||||||||||||||||||||
| N-acetyl-glucosamine | 9768310.857 | 7213146.982 | 0 | |||||||||||||||||||||
| glucose-6-phosphate | 4.067897086E8 | 1.828808347E8 | 0 | |||||||||||||||||||||
| glutamate | 1340216244 | 6.658121568E9 | 1169145644 | |||||||||||||||||||||
| glutamine | 2.056023878E8 | 4.190071894E8 | 2.240359272E8 | |||||||||||||||||||||
| 2-hydroxy-glutarate | 0 | 3.294905939E7 | 3.590857646E7 | |||||||||||||||||||||
| glyceraldehyde | 7750331.635 | 2.298763835E7 | 1.335637885E7 | |||||||||||||||||||||
| glycerate | 3.755884754E8 | 2.740662649E8 | 1.147235845E8 | |||||||||||||||||||||
| 2-phosphoglycerate | 0 | 4572553.126 | 0 | |||||||||||||||||||||
| 3-phosphoglycerate | 2.302342533E7 | 3.439023367E7 | 5846386.359 | |||||||||||||||||||||
| glycerol | 4.661167241E7 | 6.570150232E7 | 6.856078056E7 | |||||||||||||||||||||
| glycerol-3-phosphate | 1.041908498E7 | 1.718752623E8 | 1.772606967E8 | |||||||||||||||||||||
| glycine | 6.209431422E8 | 2057670347 | 4.592510717E8 | |||||||||||||||||||||
| glycolate | 1.405411682E7 | 2.059001147E7 | 1.808473331E7 | |||||||||||||||||||||
| homoserine | 3.335082045E8 | 3.591716395E8 | 1.399917335E7 | |||||||||||||||||||||
| N-2-oxocaproyl-homoserine lactone | 1.517760032E7 | 1.867238667E7 | 2.293308736E7 | |||||||||||||||||||||
| N-2-oxooctanyol-DL-homoserine lactone | 0 | 0 | 11635.331750000001 | |||||||||||||||||||||
| N-hexanoyl-homoserine lactone | 0 | 0 | 3740822.157 | |||||||||||||||||||||
| homoserine-lactone | 1.809613475E7 | 1.95027542E7 | 2.570292888E7 | |||||||||||||||||||||
| indole-3-acetaldehyde | 4383476.133 | 9365954 | 8288216.327 | |||||||||||||||||||||
| indole-3-acetic acid | 0 | 4.691573849E7 | 7820113.983 | |||||||||||||||||||||
| indole-3-lactate | 2186880.9 | 2630974.483 | 2594399.649 | |||||||||||||||||||||
| myoinositol-2-phosphate | 1.775189535E7 | 2.390872067E7 | 5423904.234 | |||||||||||||||||||||
| isoleucine | 1.374542193E8 | 3.199794331E8 | 1.217658453E8 | |||||||||||||||||||||
| lactate | 4.274263196E8 | 8.536903754E8 | 9.656382479E8 | |||||||||||||||||||||
| leucine | 5.790712841E8 | 1439535415 | 5.516541295E8 | |||||||||||||||||||||
| maleamate | 4192487.17 | 5795711.583 | 5199904.97 | |||||||||||||||||||||
| malate | 3.923954001E8 | 848322731 | 8.097098594E8 | |||||||||||||||||||||
| 2-isopropylmalic acid | 0 | 2.890969401E7 | 0 | |||||||||||||||||||||
| 2-methyl-malate | 6.080885221E7 | 1.079938159E8 | 4.788533355E7 | |||||||||||||||||||||
| maltose | 1.326685341E8 | 133750122 | 1800785.279 | |||||||||||||||||||||
| 3,4-dihydroxy-mandelic acid | 8064132.172 | 8749595.731 | 1.079897095E7 | |||||||||||||||||||||
| mannose | 4.487437963E8 | 252336952 | 1.393508464E7 | |||||||||||||||||||||
| mannose-6-phosphate | 9.636200797E7 | 5.955190153E7 | 0 | |||||||||||||||||||||
| methionine | 2034513.532 | 7.628279346E7 | 2.730399671E8 | |||||||||||||||||||||
| Nicotinamide | 1.258987794E8 | 501164642 | 3.260022908E8 | |||||||||||||||||||||
| nicotinic acid | 1.170017169E8 | 2.097302329E8 | 4.873414118E8 | |||||||||||||||||||||
| phenylacetate | 2956646.363 | 4456889.651 | 9633215.127 | |||||||||||||||||||||
| phenylalanine | 4.388546669E8 | 4.935537981E8 | 1.789371058E8 | |||||||||||||||||||||
| phenylpyruvate | 2956401.783 | 3496928.418 | 2585520.354 | |||||||||||||||||||||
| phosphoenolpyruvate | 7904362.188 | 1.402691499E7 | 5128633.264 | |||||||||||||||||||||
| proline | 2.666568981E8 | 1511423646 | 1605577602 | |||||||||||||||||||||
| 2-amino-2-methyl-3-hydroxy-propanoate | 0 | 0 | 3.371460358E7 | |||||||||||||||||||||
| putrescine | 0 | 1.005640698E7 | 1.171328886E7 | |||||||||||||||||||||
| pyroglutamate | 2.540546723E9 | 4.104969694E9 | 3.284833895E9 | |||||||||||||||||||||
| pyrophosphate | 0 | 9.711275107E7 | 0 | |||||||||||||||||||||
| pyruvate | 5.764449038E7 | 1.054069723E8 | 4.67062416E7 | |||||||||||||||||||||
| 3-hydroxypyruvate | 2.813426578E7 | 3.874564615E7 | 4.709903788E7 | |||||||||||||||||||||
| rhamnose | 5467552.28 | 7287586.92 | 0 | |||||||||||||||||||||
| ribitol | 1000000000 | 1000000000 | 1000000000 | |||||||||||||||||||||
| ribose | 694367707 | 5.328332125E8 | 4.384904984E8 | |||||||||||||||||||||
| sedoheptulose-7-phosphate | 5.917838268E7 | 7.411755046E7 | 3993024.476 | |||||||||||||||||||||
| serine | 1276441786 | 3.335129505E9 | 7.695622812E8 | |||||||||||||||||||||
| cycloserine | 5.084750116E7 | 2.600599198E8 | 8.100619203E7 | |||||||||||||||||||||
| N-acetyl-serine | 1.059336746E8 | 1.842237611E8 | 0 | |||||||||||||||||||||
| 3-dehydroshikimate | 2915323.859 | 3497219.62 | 1688258.611 | |||||||||||||||||||||
| spermine | 3541465.43 | 4704480.265 | 3252199.329 | |||||||||||||||||||||
| succinate | 2.657480135E9 | 4.484433305E9 | 5.284361116E9 | |||||||||||||||||||||
| threonine | 1749332247 | 3.39003851E9 | 8.915184433E7 | |||||||||||||||||||||
| threose | 3516783.548 | 4772561.199 | 5178304.532 | |||||||||||||||||||||
| thymine | 589083380 | 6.178797086E8 | 2.814467823E8 | |||||||||||||||||||||
| tryptophan | 2539672.872 | 4857143.382 | 6075927.328 | |||||||||||||||||||||
| tyrosine | 9.550352555E7 | 1.368401247E8 | 7.821043712E7 | |||||||||||||||||||||
| Unknown#1325.8-pin-mhe_007 | 2.746316097E7 | 3.831566682E7 | 3.146717502E7 | |||||||||||||||||||||
| Unknown#1366.59-ppu-cja_010 | 1.028040972E8 | 1.286606871E8 | 3.83307523E7 | |||||||||||||||||||||
| Unknown#1366.9-pin-mhe_011 | 0 | 0 | 5.100790519E7 | |||||||||||||||||||||
| Unknown#1392.1-pin-mhe_012 | 0 | 0 | 8.392893011E7 | |||||||||||||||||||||
| Uracil | 1702329403 | 2117311135 | 1641307740 | |||||||||||||||||||||
| uridine | 1.474320764E7 | 8750848.652 | 0 | |||||||||||||||||||||
| valine | 9.230785067E8 | 2.592221665E9 | 3.434458049E8 | |||||||||||||||||||||
| xylitol | 2.239443265E7 | 0 | 0 | |||||||||||||||||||||
| xylose | 1.166395907E7 | 1.05930369E7 | 3438379.921 | |||||||||||||||||||||
| xylulose | 7.952552253E7 | 7.546167784E7 | 0 | |||||||||||||||||||||
| xylulose-5-phosphate | 855942.3938 | 1592458.039 | 0 |
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| CoA | 1/2ODmax | ODmax | Odstat | |||||||||
| CoenzymeA | 4912868 | 4693358 | 4415376 | 4029986 | 7999299 | 5436994 | 5471682 | 7341028 | 3722929 | 3119229 | 3701465 | 3818397 |
| Acetyl-CoA | 58415094 | 60965398 | 63465947 | 60060491 | 45393976 | 31968886 | 35167580 | 45404304 | 44039022 | 39014335 | 41993660 | 38573573 |
| Propenoyl-CoA | 2135768 | 2095049 | 1494035 | 1733782 | 337249 | 305428 | 301575 | 250793 | 223376 | 182202 | 258149 | 281767 |
| Propanoyl-CoA | 5023647 | 5226892 | 4527377 | 4287440 | 1943418 | 2347079 | 1925851 | 2219608 | 7656282 | 5159891 | 6943862 | 6861228 |
| Butanoyl-CoA | 4776301 | 5393140 | 4026315 | 5894770 | 20097739 | 17224231 | 12407080 | 17225271 | 14975138 | 14403527 | 11433604 | 11987066 |
| Isobutanoyl-CoA | 4371966 | 4922817 | 4109338 | 4505565 | 15840788 | 14356691 | 11994533 | 13954118 | 8893864 | 8921627 | 6932793 | 9596689 |
| (S)-2-Methylbutanoyl-CoA | 9949737 | 10129657 | 8731578 | 8150428 | 15483160 | 15620341 | 18433654 | 20650339 | 44850423 | 36776164 | 32778771 | 48635322 |
| Isovaleryl-CoA | 4999600 | 4500310 | 3911202 | 3374602 | 25918635 | 19124343 | 20376423 | 23534793 | 55823717 | 35807178 | 53743495 | 46561363 |
| Pentanoyl-CoA | 824233 | 868427 | 721083 | 755892 | 1771268 | 1402055 | 1438430 | 1969274 | 5972812 | 6884757 | 6884792 | 7280826 |
| Malonyl-CoA | 177622 | 217814 | 177321 | 233897 | 732199 | 626023 | 648105 | 713322 | 871181 | 1022431 | 866700 | 887095 |
| Methylmalonyl-CoA | 5123649 | 4195843 | 3916541 | 3763798 | 2875768 | 1995122 | 2569047 | 1923211 | 9979938 | 7408454 | 9096165 | 10471671 |
| Succinyl-CoA | 21169812 | 17919356 | 22625778 | 14636368 | 19358027 | 22797158 | 14771345 | 17849154 | 31131938 | 26989307 | 33768034 | 33003571 |
| Cyclohexa-1,5-dienecarbonyl-CoA | 1227884 | 1306538 | 925570 | 1214402 | 2339858 | 2739259 | 2490548 | 2597333 | 7394661 | 5144411 | 8170709 | 7629941 |
| Cyclohex-1-ene-1-carboxyl-CoA | 221606 | 177166 | 155359 | 182230 | 1090067 | 856545 | 745147 | 857469 | 595135 | 746863 | 741959 | 566189 |
| Methylsuccinyl-CoA | 430019 | 486722 | 340381 | 425041 | 396548 | 429238 | 333357 | 396585 | 485835 | 408756 | 350739 | 325660 |
| C28H42N7O18P3S, similar to beta-(2-Furyl)propionyl-CoA | 1739194 | 1817161 | 1652515 | 1545113 | 1034390 | 1076613 | 1304001 | 1434617 | 605293 | 588617 | 823728 | 772815 |
| C29H41N8O17P3S, exact mass based | 1956558 | 1959717 | 1510641 | 1436500 | 11001764 | 9401792 | 8029753 | 10627222 | 9750493 | 8677756 | 9005034 | 11810337 |
| Phenylglyoxylyl-CoA | 81301 | 97570 | 84085 | 88380 | 883414 | 781849 | 817047 | 1053451 | 1346654 | 1350960 | 1368696 | 1943608 |
| C29H43N8O17P3S, similar to N-Methylanthraniloyl-CoA | 3621909 | 4315683 | 2862026 | 3731336 | 3989842 | 4396538 | 3225252 | 3857268 | 1260793 | 990580 | 1201589 | 1246272 |
| 2,3-Dihydro-2,3-dihydroxybenzoyl-CoA | 610018 | 585519 | 641224 | 594254 | 1103750 | 1019841 | 903896 | 818590 | 473518 | 456067 | 498651 | 496308 |
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| Name | average 1/2ODmax | average ODmax | average ODstat | ||||||
| (4-hydroxyphenyl)acetate | 0 | 0 | 9289.599772 | ||||||
| 1,6-anhydro-glucose | 13241.09054 | 21598.00354 | 5276.194721 | ||||||
| 1-O-methyl-alpha-glucopyranoside | 120221.2645 | 22595.36598 | 0 | ||||||
| 1-pyrroline-2-carboxylate | 11399.37926 | 12334.10381 | 12984.44374 | ||||||
| 2,4-dihydroxybutanoate | 23100.79123 | 17651.50354 | 17132.32856 | ||||||
| 2-amino-2-methylpropane-1,3-diol | 17292.52606 | 304397.5939 | 119436.4133 | ||||||
| 2-aminobutanoate | 13801.57337 | 64058.93625 | 18782.03809 | ||||||
| 2-aminoisobutanoate | 1846.437294 | 2522.104867 | 981.3441083 | ||||||
| 2-hydroxy-4-(methylthio)butanoate | 1062.234506 | 4951.057944 | 21931.4075 | ||||||
| 2-hydroxybutanoate | 0 | 21893.13429 | 20704.05855 | ||||||
| 2-hydroxy-glutarate | 9126.16993 | 93357.42608 | 124743.2806 | ||||||
| 2-hydroxyisocaproate | 0 | 6154.527856 | 7563.933773 | ||||||
| 2-isopropylmalic acid | 9318.271904 | 32305.2513 | 26006.79167 | ||||||
| 2-methyl-malate | 47322.16999 | 147337.0056 | 148228.6592 | ||||||
| 2-oxobutanoate | 1706.542423 | 5182.400179 | 1972.253655 | ||||||
| 2-oxoglutarate | 3825.152833 | 16351.44434 | 8373.118877 | ||||||
| 3,4-dihydroxybenzoate | 2154.914701 | 2729.888575 | 1818.869325 | ||||||
| 3-aminoisobutanoate | 51072.72964 | 53180.989 | 52068.8065 | ||||||
| 3-dehydroshikimate | 0 | 4274.800011 | 2519.69768 | ||||||
| 3-hydroxybenzoate | 1118.434005 | 1577.661383 | 1487.247318 | ||||||
| 3-hydroxyindole | 145483.7357 | 145062.1962 | 161133.4753 | ||||||
| 3-hydroxyisobutanoate | 1443.406185 | 2030.471884 | 4677.262604 | ||||||
| 3-hydroxyisovaleric acid | 0 | 0 | 13350.90751 | ||||||
| 4-hydroxybenzoate | 4347.213233 | 9265.616971 | 6439.181642 | ||||||
| 4-hydroxybutanoate | 8341.833798 | 57319.67342 | 130046.4036 | ||||||
| 4-hydroxyphenylacetonitrile | 1702.447467 | 1965.253942 | 2211.86605 | ||||||
| 4-oxobutanoate | 0 | 2897.024902 | 2276.482706 | ||||||
| 4-oxopentanoic acid | 12512.22651 | 14994.85326 | 15058.76188 | ||||||
| 6-deoxy-mannose | 115413.7129 | 40962.12844 | 1007.050309 | ||||||
| alanine | 186437.366 | 675858.5938 | 377179.5159 | ||||||
| aminomalonic acid | 0 | 32029.00758 | 30254.65806 | ||||||
| arabinonate | 2480.46599 | 2885.912754 | 826.9863153 | ||||||
| arabinono-1,4-lactone | 6041.827278 | 8305.663046 | 0 | ||||||
| arabinose | 113599.8842 | 18742.39801 | 0 | ||||||
| asparagine | 0 | 3974.843049 | 0 | ||||||
| aspartate | 0 | 22641.73173 | 0 | ||||||
| benzene-1,2,4-triol | 2685.662953 | 6543.742449 | 9444.725211 | ||||||
| benzoate | 164377.0865 | 214497.77 | 234102.4865 | ||||||
| beta-Alanine | 111004.0078 | 17010.72479 | 25348.08442 | ||||||
| butylamine | 2583.330356 | 7800.087292 | 3031.189135 | ||||||
| citraconic acid | 13291.46357 | 20733.4688 | 14481.70315 | ||||||
| citrate | 19032.68054 | 31779.28151 | 26073.8232 | ||||||
| cysteine | 0 | 8649.927068 | 7935.665552 | ||||||
| diethylene glycol | 114075.8286 | 126325.7524 | 147065.7096 | ||||||
| erythritol | 6432.784773 | 20202.39974 | 35682.00093 | ||||||
| erythronic acid | 17425.01564 | 52475.53757 | 36736.3588 | ||||||
| erythronic acid-1,4-lactone | 5212.858485 | 16058.7725 | 12997.351 | ||||||
| erythrose | 21921.41473 | 78241.62423 | 44883.12959 | ||||||
| ethanolamine | 30960.5817 | 139357.8415 | 274287.2696 | ||||||
| fructose | 518667.171 | 284286.21 | 3647.387377 | ||||||
| fumarate | 74158.3667 | 89377.55297 | 77311.96085 | ||||||
| galactose | 287798.7167 | 136190.6944 | 0 | ||||||
| gluconic-acid | 53450.97373 | 24254.20329 | 5112.018837 | ||||||
| glucose | 1401777.391 | 680722.0745 | 148902.9758 | ||||||
| glutamine | 96326.14762 | 126582.3145 | 142426.8809 | ||||||
| glyceraldehyde | 9937.889679 | 26075.91615 | 15092.50598 | ||||||
| glycerate | 38642.76494 | 138259.5499 | 57055.02788 | ||||||
| glycerol-3-phosphate | 0 | 2377.851981 | 1843.756899 | ||||||
| glycine | 25679.78888 | 117986.9177 | 76740.94961 | ||||||
| glycolate | 7575.441393 | 14218.2835 | 10748.57535 | ||||||
| hydrocinnamic acid | 18962.46781 | 28176.20618 | 28493.75941 | ||||||
| hydroquinone | 5964.373506 | 1497.075992 | 1384.895708 | ||||||
| hydroxylamine | 42642.97452 | 54994.37608 | 55226.30733 | ||||||
| indole-3-lactate | 0 | 510.5191295 | 568.7783619 | ||||||
| isocaproate | 0 | 5383.709628 | 3284.426331 | ||||||
| isoleucine | 16528.71098 | 38714.57974 | 18782.29433 | ||||||
| isomaltose* | 285.1419036 | 630.276348 | 0 | ||||||
| lactate | 782860.4662 | 994265.4398 | 1215024.733 | ||||||
| laminaribiose* | 3458.983938 | 8499.335859 | 606.5945435 | ||||||
| leucine | 0 | 54179.53124 | 24567.30548 | ||||||
| malate | 415601.0876 | 965945.4366 | 945762.7512 | ||||||
| maleate | 7494.438311 | 42037.55822 | 21269.74702 | ||||||
| malonamide | 313710.7895 | 438380.1751 | 386739.6702 | ||||||
| malonic acid | 0 | 1656.04694 | 1719.925459 | ||||||
| mannonic acid-1,4-lactone | 0 | 492.9970468 | 0 | ||||||
| mannose | 159580.4492 | 47561.44195 | 0 | ||||||
| mannosylglycerate | 8411.381146 | 0 | 0 | ||||||
| methyl 3,6-anhydro-alpha-galactopyranoside | 3513.663272 | 4304.23687 | 3661.989529 | ||||||
| myo-inositol | 0 | 850.0713329 | 0 | ||||||
| N-acetyl-galactosamine | 3671.443836 | 629.3391122 | 0 | ||||||
| N-acetyl-glucosamine | 4287.622265 | 1006.047384 | 0 | ||||||
| N-acetyl-phenylalanine | 0 | 0 | 972.2001417 | ||||||
| nicotinic acid | 21321.99894 | 26841.36041 | 121129.9429 | ||||||
| oxalate | 9393.353043 | 11625.98082 | 10514.72433 | ||||||
| phenylpyruvate | 2495.374715 | 4905.818014 | 4074.834533 | ||||||
| proline | 54337.72263 | 963555.2114 | 789359.9671 | ||||||
| propane-1,2-diol | 12926.23761 | 15962.30631 | 31277.14495 | ||||||
| propane-1,3-diol | 105286.998 | 53200.53431 | 0 | ||||||
| putrescine | 8087.277356 | 0 | 0 | ||||||
| pyridoxal | 0 | 1363.784526 | 519.1638029 | ||||||
| pyroglutamate | 51637.52579 | 282849.0538 | 157454.2446 | ||||||
| pyrrole-2-carboxylate | 6045.629836 | 12082.07825 | 8520.154384 | ||||||
| pyruvate | 126135.6008 | 41206.06283 | 13904.45386 | ||||||
| quinate | 1138.771335 | 1889.73512 | 1362.196213 | ||||||
| ribonate | 3637.443671 | 6401.706855 | 4352.95201 | ||||||
| ribose | 35320.99403 | 54534.9951 | 38510.98767 | ||||||
| shikimic acid | 0 | 130438.5169 | 74191.88895 | ||||||
| sorbitol | 7360.274366 | 0 | 0 | ||||||
| succinate | 2298.598083 | 2452304.88 | 2784346.948 |
