Additional Data related to the catabolsim of P. vulgatus

Selected Cell

Cell:

Value:

Outline 1P_vulgatus_ATCC_8482 2Proteomic_data 3Amino_acids 4Nucleotide 5Fatty_acdis_cell_wall 6Metabolites 7Metabolome_CoA 8Exo_Metabolome



Tab	Name	Contents
1	1P_vulgatus_ATCC_8482	Genome of P. vulgatus ATCC 8482
2	2Proteomics_data	Identified proteins with peptide counts
3	3Amino_acids	BioCyc-predicted biosynthesis of amino acids including identified proteins
4	4Nucleotide	BioCyc-predicted biosynthesis of nucleotides including identified proteins
5	5Fatty_acdis_cell_wall	BioCyc-predicted biosynthesis of fatty acids and cell wall including identified proteins
6	6Metabolites	Metabolites of the intracellular metabolome
7	7Metabolome_CoA	CoAs of the metabolome
8	8Exo_Metabolome	Metabolites of the extracellular metabolome

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BVU_RS17035	BVU_3389	4231976	4233244	422		BVU_RS17035		DNA mismatch repair protein MutS
BVU_RS17040		4233298	4233528	76		BVU_RS17040		hypothetical protein
BVU_RS17045	BVU_3390	4233512	4234837	441		BVU_RS17045		zincin-like metallopeptidase domain-containing protein
BVU_RS17050	BVU_3391	4234854	4236038	394		BVU_RS17050		DUF3991 and TOPRIM domain-containing protein
BVU_RS17055	BVU_3392	4236043	4236786	247		BVU_RS17055		hypothetical protein
BVU_RS17060	BVU_3393	4236884	4237423	179		BVU_RS17060		type IA DNA topoisomerase
BVU_RS17065	BVU_3394	4237420	4237980	186		BVU_RS17065		hypothetical protein
BVU_RS17070	BVU_3395	4237977	4238654	225		BVU_RS17070		hypothetical protein
BVU_RS17075	BVU_3396	4238682	4238858	58		BVU_RS17075		histone H1
BVU_RS17080	BVU_3398	4239195	4239497	100		BVU_RS17080		hypothetical protein
BVU_RS17085		4239530	4239766	78		BVU_RS17085		hypothetical protein
BVU_RS17090	BVU_3399	4239816	4240247	143		BVU_RS17090		PcfK-like family protein
BVU_RS17095	BVU_3400	4240244	4241518	424		BVU_RS17095		PcfJ domain-containing protein
BVU_RS17100	BVU_3401	4241870	4242634	254		BVU_RS17100		ParA family protein
BVU_RS17105	BVU_3402	4242720	4243193	157		BVU_RS17105		hypothetical protein
BVU_RS17110	BVU_3403	4243322	4245262	646	c	BVU_RS17110		ribose-phosphate pyrophosphokinase
BVU_RS17115	BVU_3404	4245259	4246176	305	c	BVU_RS17115		HIRAN domain-containing protein
BVU_RS17120	BVU_3405	4246179	4246676	165	c	BVU_RS17120		HAD-IA family hydrolase
BVU_RS17125	BVU_3406	4246673	4247653	326	c	BVU_RS17125		DNA-protecting protein DprA
BVU_RS22480		4247998	4248144	48		BVU_RS22480		hypothetical protein
BVU_RS22295		<4248087	4248325			BVU_RS22295		ParA family protein
BVU_RS17130	BVU_3407	4248411	4248884	157		BVU_RS17130		hypothetical protein
BVU_RS17135	BVU_3408	4248971	4249201	76	c	BVU_RS17135		hypothetical protein
BVU_RS17140	BVU_3409	4249215	4251476	753	c	BVU_RS17140		ATP-dependent RecD-like DNA helicase
BVU_RS17145	BVU_3410	4251782	4254865	1027	c	BVU_RS17145		DEAD/DEAH box helicase family protein
BVU_RS17150	BVU_3411	4254872	4256677	601	c	BVU_RS17150		DUF262 domain-containing HNH endonuclease family protein
BVU_RS17155	BVU_3412	4256679	4257971	430	c	BVU_RS17155	3.1.21.-	restriction endonuclease subunit S
BVU_RS17160	BVU_3413	4257976	4260291	771	c	BVU_RS17160		type I restriction-modification system subunit M
BVU_RS17165	BVU_3414	4260298	4260684	128	c	BVU_RS17165		hypothetical protein
BVU_RS17170	BVU_3415	4260689	4260898	69	c	BVU_RS17170		helix-turn-helix domain-containing protein
BVU_RS22300		4261470	4261784	104	c	BVU_RS22300		hypothetical protein
BVU_RS17175	BVU_3418	4262238	4262600	120		BVU_RS17175		hypothetical protein
BVU_RS17180	BVU_3419	4262685	4263062	125		BVU_RS17180		hypothetical protein
BVU_RS17185		4263096	4263350	84	c	BVU_RS17185		helix-turn-helix domain-containing protein
BVU_RS17190	BVU_3421	4264216	4264785	189		BVU_RS17190		hypothetical protein
BVU_RS17195	BVU_3422	4264788	4265285	165		BVU_RS17195		SLOG family protein
BVU_RS17200	BVU_3423	4265569	4266246	225		BVU_RS17200		LexA family transcriptional regulator
BVU_RS17205	BVU_3424	4266274	4267532	418.6666666666667		BVU_RS17205		Y-family DNA polymerase
BVU_RS17210	BVU_3426	4267699	4268196	165		BVU_RS17210		helix-turn-helix domain-containing protein
BVU_RS17215	BVU_3427	4268206	4269261	351		BVU_RS17215		HNH endonuclease
BVU_RS17220	BVU_3428	4269504	4269788	94		BVU_RS17220		integration host factor subunit beta
BVU_RS17225	BVU_3429	4269875	4271446	523	c	BVU_RS17225		putative DNA binding domain-containing protein
BVU_RS17230	BVU_3430	4271584	4274874	1096	c	BVU_RS17230		CHC2 zinc finger domain-containing protein
BVU_RS17235		4274871	4275074	67	c	BVU_RS17235		hypothetical protein
BVU_RS17240	BVU_3432	4275265	4275582	105	c	BVU_RS17240		hypothetical protein
BVU_RS17245	BVU_3433	4275934	4276383	149		BVU_RS17245		helix-turn-helix transcriptional regulator
BVU_RS17250	BVU_3434	4276811	4278667	618		BVU_RS17250		gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
BVU_RS17255	BVU_3435	4278944	4279381	145		BVU_RS17255		hypothetical protein
BVU_RS17260	BVU_3436	4279442	4281754	770	c	BVU_RS17260		ABC transporter permease
BVU_RS17265	BVU_3437	4281774	4282448	224	c	BVU_RS17265		ABC transporter ATP-binding protein
BVU_RS17270	BVU_3438	4282483	4284792	769	c	BVU_RS17270		FtsX-like permease family protein
BVU_RS17275	BVU_3439	4285114	4287219	701		BVU_RS17275		M3 family metallopeptidase
BVU_RS17280	BVU_3440	4287400	4288560	386		BVU_RS17280		acyltransferase
BVU_RS17285	BVU_3441	4288667	4289476	269	c	BVU_RS17285		YjbH domain-containing protein
BVU_RS17290	BVU_3442	4289662	4290375	237	c	BVU_RS17290		WecB/TagA/CpsF family glycosyltransferase
BVU_RS17295	BVU_3443	4290384	4291478	364	c	BVU_RS17295	2.4.-.-	glycosyltransferase
BVU_RS17300	BVU_3444	4291480	4293393	637	c	BVU_RS17300		glycosyl transferase
BVU_RS17305	BVU_3445	4293393	4294298	301	c	BVU_RS17305		IS982 family transposase
BVU_RS17310	BVU_3446	4294503	4295537	344	c	BVU_RS17310	2.4.-.-	glycosyltransferase
BVU_RS17315	BVU_3447	4295518	4296252	244	c	BVU_RS17315		acetyltransferase
BVU_RS17320	BVU_3448	4296331	4297158	275	c	BVU_RS17320		alpha-1,2-fucosyltransferase
BVU_RS17325	BVU_3449	4297177	4298484	435	c	BVU_RS17325		O-antigen ligase family protein
BVU_RS17330	BVU_3450	4298491	4299381	296	c	BVU_RS17330		glycosyltransferase family 2 protein
BVU_RS17335	BVU_3451	4299409	4300971	520	c	BVU_RS17335		MATE family efflux transporter
BVU_RS17345	BVU_3453	4301677	4302060	127	c	BVU_RS17345		hypothetical protein
BVU_RS17350	BVU_3454	4302143	4302691	182	c	BVU_RS17350		UpxY family transcription antiterminator
BVU_RS17355	BVU_3457	4303686	4304102	138	c	BVU_RS17355		DUF2442 domain-containing protein
BVU_RS17360	BVU_3458	4304413	4304841	142		BVU_RS17360		DUF3791 domain-containing protein
BVU_RS17365	BVU_3459	4304838	4305311	157		BVU_RS17365		DUF3990 domain-containing protein
BVU_RS17370		4305308	4305535	75		BVU_RS17370		ubiquitin-associated-like domain-containing protein
BVU_RS17375	BVU_3460	4305566	4306105	179	c	BVU_RS17375		glutathione peroxidase
BVU_RS17385	BVU_3461	4306315	4308087	590		BVU_RS17385		ATP-binding protein
BVU_RS17390	BVU_3462	4308124	4309464	446		BVU_RS17390		sigma-54 dependent transcriptional regulator
BVU_RS17395	BVU_3463	4309580	4310881	433		BVU_RS17395		ATP-binding protein
BVU_RS17400	BVU_3464	4310962	4314138	1058		BVU_RS17400		UvrD-helicase domain-containing protein
BVU_RS17405	BVU_3465	4314138	4317017	959		BVU_RS17405		PD-(D/E)XK nuclease family protein
BVU_RS17410	BVU_3466	4317092	4317919	275	c	ispE	2.7.1.148	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
BVU_RS17415	BVU_3467	4318180	4319736	518		dnaB	3.6.4.12	replicative DNA helicase
BVU_RS17420	BVU_3468	4319890	4322352	820		pheT	6.1.1.20	phenylalanine--tRNA ligase subunit beta
BVU_RS17425	BVU_3469	4322386	4323126	246		BVU_RS17425		YebC/PmpR family DNA-binding transcriptional regulator
BVU_RS17430	BVU_3470	4323128	4323373	81		BVU_RS17430		TIGR03905 family TSCPD domain-containing protein
BVU_RS17435	BVU_3471	4323489	4324460	323	c	BVU_RS17435		hypothetical protein
BVU_RS17440	BVU_3472	4324567	4325349	260	c	istB		IS21-like element helper ATPase IstB
BVU_RS17445	BVU_3473	4325346	4326920	524	c	istA		IS21 family transposase
BVU_RS17450	BVU_3475	4328308	4328812	167.33333333333334		BVU_RS17450		hypothetical protein
BVU_RS17460	BVU_3477	4329180	4330115	311		BVU_RS17460		DUF5712 family protein
BVU_RS17465	BVU_3478	4330130	4331752	540		BVU_RS17465		type IV secretory system conjugative DNA transfer family protein
BVU_RS17470	BVU_3479	4331742	4332058	104.66666666666667		BVU_RS17470		mobilization protein
BVU_RS17475	BVU_3480	4332097	4333131	344	c	BVU_RS17475		zincin-like metallopeptidase domain-containing protein
BVU_RS17480	BVU_3481	4333128	4333325	65	c	BVU_RS17480		hypothetical protein
BVU_RS17485	BVU_3482	4333719	4333988	89		BVU_RS17485		hypothetical protein
BVU_RS17490	BVU_3483	4334192	4334971	259		BVU_RS17490		ParA family protein
BVU_RS17495		4334987	4335220	77		BVU_RS17495		hypothetical protein
BVU_RS17500	BVU_3484	4335232	4337043	603		BVU_RS17500		fimbrillin family protein
BVU_RS17505	BVU_3485	4337588	4338433	281		BVU_RS17505		Fic family protein
BVU_RS17510	BVU_3486	4338463	4339149	228		BVU_RS17510		hypothetical protein
BVU_RS17515	BVU_3487	4339469	4339774	101		BVU_RS17515		hypothetical protein
BVU_RS17520	BVU_3488	4340214	4341278	354	c	BVU_RS17520		hypothetical protein
BVU_RS17525	BVU_3489	4341293	4341727	144	c	BVU_RS17525		hypothetical protein
BVU_RS17530		4342041	4342706	221	c	BVU_RS17530		mobilization protein

100

				Average [peptide count]
Accession No.	Locustag old	Locustag	Genome predicted funtion	1/2ODmax	ODmax	ODstat
ABR37733.1	BVU_0003	BVU_RS00015	putative ribonucleoside reductase [Phocaeicola vulgatus ATCC 8482]	8	5.75	2
ABR37734.1	BVU_0004	BVU_RS00020	putative exported protein [Phocaeicola vulgatus ATCC 8482]	2	0	0
ABR37741.1	BVU_0011	BVU_RS00060	putative 50S ribosomal protein L9 [Phocaeicola vulgatus ATCC 8482]	14	13.75	13
ABR37742.1	BVU_0012	BVU_RS00065	30S ribosomal protein S18 [Phocaeicola vulgatus ATCC 8482]	71	56.25	69
ABR37743.1	BVU_0013	BVU_RS00070	30S ribosomal protein S6 [Phocaeicola vulgatus ATCC 8482]	10.5	16.25	16.75
ABR37745.1	BVU_0015	BVU_RS00085	two-component system response regulator [Phocaeicola vulgatus ATCC 8482]	24.75	59.75	69.75
ABR37746.1	BVU_0016	BVU_RS00090	two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482]	5.25	1.25	2.25
ABR37747.1	BVU_0017	BVU_RS00095	putative elongation factor G [Phocaeicola vulgatus ATCC 8482]	0	36	17.75
ABR37776.1	BVU_0046	BVU_RS00240	phosphoglucomutase/phosphomannomutase [Phocaeicola vulgatus ATCC 8482]	1.75	5.5	5.25
ABR37803.1	BVU_0073	BVU_RS00375	DnaJ domain protein [Phocaeicola vulgatus ATCC 8482]	0	1	1
ABR37808.1	BVU_0078	BVU_RS00400	putative phosphoribosylformylglycinamidine synthase [Phocaeicola vulgatus ATCC 8482]	16.5	9.75	1
ABR37812.1	BVU_0082	BVU_RS00420	putative secreted protein [Phocaeicola vulgatus ATCC 8482]	2.75	1.25	0
ABR37814.1	BVU_0084	BVU_RS00430	putative endonuclease/exonuclease/phosphatase family protein [Phocaeicola vulgatus ATCC 8482]	0.75	0	3
ABR37815.1	BVU_0085	BVU_RS00435	glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482]	4.75	6.5	8.5
ABR37816.1	BVU_0086	BVU_RS00440	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	14.75	18	9.75
ABR37822.1	BVU_0092	BVU_RS00475	putative phosphoribosylformylglycinamidine cyclo-ligase [Phocaeicola vulgatus ATCC 8482]	0.75	1.75	0.5
ABR37825.1	BVU_0095	BVU_RS00485	orotidine 5'-phosphate decarboxylase [Phocaeicola vulgatus ATCC 8482]	0	0	1.5
ABR37827.1	BVU_0097	BVU_RS00495	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Phocaeicola vulgatus ATCC 8482]	1	2.25	0.75
ABR37828.1	BVU_0098	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Phocaeicola vulgatus ATCC 8482]	32.75	15.25	8.25
ABR37829.1	BVU_0099	BVU_RS00505	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482]	0	1.75	3.5
ABR37853.1	BVU_0123	BVU_RS00625	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	3.25	4.75
ABR37871.1	BVU_0143	BVU_RS00725	GTP cyclohydrolase II [Phocaeicola vulgatus ATCC 8482]	3.25	3	3.5
ABR37872.1	BVU_0144	BVU_RS00730	aspartate aminotransferase [Phocaeicola vulgatus ATCC 8482]	20.5	20.5	20.25
ABR37874.1	BVU_0146	BVU_RS00745	5'-nucleotidase precursor [Phocaeicola vulgatus ATCC 8482]	1	0.5	0
ABR37875.1	BVU_0147	BVU_RS00750	putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase [Phocaeicola vulgatus ATCC 8482]	3	2	1.5
ABR37876.1	BVU_0148	BVU_RS00755	50S ribosomal protein L19 [Phocaeicola vulgatus ATCC 8482]	16.5	24	29
ABR37885.1	BVU_0157	BVU_RS00815	conserved protein, with a weak D-galactarate dehydratase/altronate hydrolase domain [Phocaeicola vulgatus ATCC 8482]	0	1	0
ABR37897.1	BVU_0169	BVU_RS00870	putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482]	7	0	6.25
ABR37919.1	BVU_0191	BVU_RS00975	ROK family transcriptional repressor, with glucokinase domain [Phocaeicola vulgatus ATCC 8482]	8.25	12.5	15.75
ABR37923.1	BVU_0195	BVU_RS00995	membrane fusion efflux protein [Phocaeicola vulgatus ATCC 8482]	14.5	10	12.25
ABR37924.1	BVU_0196	BVU_RS01000	putative outer membrane efflux protein [Phocaeicola vulgatus ATCC 8482]	1.75	2.5	2
ABR37926.1	BVU_0198	BVU_RS01010	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	1.75	4.25
ABR37928.1	BVU_0200	BVU_RS01020	putative alcohol dehydrogenase [Phocaeicola vulgatus ATCC 8482]	0	0	1
ABR37929.1	BVU_0201	BVU_RS01025	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	4.5	4.5
ABR37933.1	BVU_0205	BVU_RS01045	aspartate-semialdehyde dehydrogenase [Phocaeicola vulgatus ATCC 8482]	22.25	32.75	31.25
ABR37934.1	BVU_0206	BVU_RS01050	putative FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [Phocaeicola vulgatus ATCC 8482]	8.25	5	5.5
ABR37935.1	BVU_0207	BVU_RS01055	glycyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482]	4	5.75	2
ABR37960.1	BVU_0238	BVU_RS01205	putative membrane fusion protein transporter [Phocaeicola vulgatus ATCC 8482]	10.75	7.25	6.75
ABR37963.1	BVU_0241	BVU_RS01220	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482]	2	2.75	1.5
ABR37964.1	BVU_0242	BVU_RS01225	outer membrane protein oprM precursor [Phocaeicola vulgatus ATCC 8482]	35.25	11.5	8
ABR37965.1	BVU_0243	BVU_RS01230	AcrB/AcrD family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482]	7	1	1.75
ABR37966.1	BVU_0244	BVU_RS01235	AcrA/AcrE family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482]	50	24	20
ABR37967.1	BVU_0245	BVU_RS01240	NADP-dependent malate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	17.5	23.25	11.75
ABR37968.1	BVU_0246	BVU_RS01250	NADP-specific glutamate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	76.5	66.25	43
ABR37969.1	BVU_0247	BVU_RS01255	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	23.25	16.5	9.75
ABR37970.1	BVU_0248	BVU_RS01260	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	23.25	13	15.25
ABR37971.1	BVU_0249	BVU_RS01265	hypothetical protein BVU_0249 [Phocaeicola vulgatus ATCC 8482]	58.5	38.25	62.75
ABR37973.1	BVU_0251	BVU_RS01275	NAD-specific glutamate dehydrogenase 1 [Phocaeicola vulgatus ATCC 8482]	0	10.25	11.75
ABR37974.1	BVU_0252	BVU_RS01280	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	1	1	0
ABR37978.1	BVU_0256	BVU_RS01300	malate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	56.5	72	86
ABR37979.1	BVU_0257	BVU_RS01305	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	22	10.75	15.25
ABR37983.1	BVU_0263	BVU_RS01330	lipoprotein [Phocaeicola vulgatus ATCC 8482]	64	61.5	65.25
ABR37986.1	BVU_0266	BVU_RS01345	Mrp/Nbp35 family ATP-binding protein [Phocaeicola vulgatus ATCC 8482]	3.75	4.75	7.75
ABR37988.1	BVU_0268	BVU_RS01355	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	8.75	2.25	6
ABR37989.1	BVU_0269	BVU_RS01360	branched-chain amino acid aminotransferase [Phocaeicola vulgatus ATCC 8482]	6.75	23.75	17.5
ABR38002.1	BVU_0282	BVU_RS01425	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	1	1.25	1.75
ABR38018.1	BVU_0298	BVU_RS01520	dTDP-glucose 4,6-dehydratase [Phocaeicola vulgatus ATCC 8482]	2	6.5	6.5
ABR38029.1	BVU_0309	BVU_RS01575	putative methylmalonyl-CoA mutase small subunit [Phocaeicola vulgatus ATCC 8482]	11.5	7.75	5
ABR38030.1	BVU_0310	BVU_RS01580	methylmalonyl-CoA mutase large subunit [Phocaeicola vulgatus ATCC 8482]	16.25	19	6.5
ABR38035.1	BVU_0315	BVU_RS01605	putative two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482]	1.5	1.75	1
ABR38036.1	BVU_0316	BVU_RS01610	putative membrane transport protein [Phocaeicola vulgatus ATCC 8482]	2.5	0	0.75
ABR38037.1	BVU_0317	BVU_RS01615	putative cation efflux pump [Phocaeicola vulgatus ATCC 8482]	0	0.75	0
ABR38038.1	BVU_0318	BVU_RS01620	putative cation efflux pump [Phocaeicola vulgatus ATCC 8482]	1.5	5.25	3.5
ABR38039.1	BVU_0319	BVU_RS01625	outer membrane efflux protein oprM precursor [Phocaeicola vulgatus ATCC 8482]	2	3.25	8.5
ABR38040.1	BVU_0320	BVU_RS01630	hypothetical protein BVU_0320 [Phocaeicola vulgatus ATCC 8482]	0	2.75	3.25
ABR38045.1	BVU_0325	BVU_RS01655	electron transfer flavoprotein beta-subunit [Phocaeicola vulgatus ATCC 8482]	7	15.75	14.5
ABR38046.1	BVU_0326	BVU_RS01660	electron transfer flavoprotein alpha-subunit [Phocaeicola vulgatus ATCC 8482]	1.25	1.75	0
ABR38048.1	BVU_0328	BVU_RS01670	acyl-CoA dehydrogenase [Phocaeicola vulgatus ATCC 8482]	8.25	7	3.5
ABR38049.1	BVU_0329	BVU_RS01675	putative histidine decarboxylase [Phocaeicola vulgatus ATCC 8482]	0	4.75	6
ABR38050.1	BVU_0330	BVU_RS01680	putative phenylacetic acid degradation protein [Phocaeicola vulgatus ATCC 8482]	0	0	0.75
ABR38051.1	BVU_0331	BVU_RS01685	putative DNA mismatch repair protein [Phocaeicola vulgatus ATCC 8482]	0	1	1.25
ABR38060.1	BVU_0340	BVU_RS01735	putative oxidoreductase [Phocaeicola vulgatus ATCC 8482]	8.5	8.25	6
ABR38064.1	BVU_0345	BVU_RS01760	60 kDa chaperonin [Phocaeicola vulgatus ATCC 8482]	46.25	82.75	73
ABR38065.1	BVU_0346	BVU_RS01765	10 kDa chaperonin [Phocaeicola vulgatus ATCC 8482]	21.75	31.5	36.75
ABR38070.1	BVU_0351	BVU_RS01790	histidyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482]	5.75	7	7
ABR38080.1	BVU_0361	BVU_RS01845	3,4-dihydroxy-2-butanone 4-phosphate synthase [Phocaeicola vulgatus ATCC 8482]	3.5	2.5	2.25
ABR38092.1	BVU_0373	BVU_RS01905	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	9	14	15.75
ABR38093.1	BVU_0374	BVU_RS01910	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	3.25	2	4
ABR38094.1	BVU_0375	BVU_RS01915	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	2.25	1.25	2
ABR38096.1	BVU_0377	BVU_RS01920	peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Phocaeicola vulgatus ATCC 8482]	0	2	0
ABR38099.1	BVU_0380	BVU_RS01935	two-component system sensor histidine kinase, with response regulator receiver domain [Phocaeicola vulgatus ATCC 8482]	2.75	0	0
ABR38103.1	BVU_0384	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase [Phocaeicola vulgatus ATCC 8482]	20	23.75	27.75
ABR38113.1	BVU_0395	BVU_RS02010	hypothetical protein BVU_0395 [Phocaeicola vulgatus ATCC 8482]	10	4.5	5.5
ABR38120.1	BVU_0402	BVU_RS02055	putative cysteine synthase [Phocaeicola vulgatus ATCC 8482]	0	1.5	2.75
ABR38123.1	BVU_0408	BVU_RS02085	tryptophanyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482]	3.25	2.25	0
ABR38124.1	BVU_0409	BVU_RS02090	hypothetical protein BVU_0409 [Phocaeicola vulgatus ATCC 8482]	19	7.5	8.5
ABR38125.1	BVU_0410	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase [Phocaeicola vulgatus ATCC 8482]	83.75	29	4.75
ABR38127.1	BVU_0412	BVU_RS02105	putative protein disulfide isomerase [Phocaeicola vulgatus ATCC 8482]	0	0	0.75
ABR38129.1	BVU_0414	BVU_RS02115	major outer membrane protein OmpA [Phocaeicola vulgatus ATCC 8482]	417.25	912.25	1338.25
ABR38135.1	BVU_0420	BVU_RS02145	CysQ, sulfite synthesis pathway protein [Phocaeicola vulgatus ATCC 8482]	0	0.75	0
ABR38136.1	BVU_0421	BVU_RS02150	conserved hypothetical exported protein [Phocaeicola vulgatus ATCC 8482]	2.5	1.5	1.25
ABR38137.1	BVU_0422	BVU_RS02155	DNA mismatch repair protein mutL [Phocaeicola vulgatus ATCC 8482]	0	3	4.5
ABR38138.1	BVU_0423	BVU_RS02160	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	0	3
ABR38140.1	BVU_0425	BVU_RS02170	peptidyl-prolyl cis-trans isomerase [Phocaeicola vulgatus ATCC 8482]	7.75	9	6.75
ABR38141.1	BVU_0426	BVU_RS02175	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	5	0.75	0
ABR38143.1	BVU_0428	BVU_RS02185	inosine-5'-monophosphate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	25	28.75	28.75
ABR38157.1	BVU_0442	BVU_RS02265	ATP-dependent DNA helicase recQ [Phocaeicola vulgatus ATCC 8482]	9	12	4.25
ABR38158.1	BVU_0443	BVU_RS02270	ATP-dependent Clp protease ATP-binding subunit [Phocaeicola vulgatus ATCC 8482]	3.5	4.5	3.5

100

Name	Locus tag	Function/EC No.	1/2ODmax	ODmax	ODstat
glycine biosynthesis I
GlyA	BVU_RS16795	serine hydroxymethyltransferase	7	18	18
glycine biosynthesis II
GcvP	BVU_RS15125	glycine dehydrogenase	0	2	0
L-alanine biosynthesis I
-	BVU_RS06885	cysteine desulfurase	0	0	1
L-arginine biosynthesis (via L-ornithine)
ArgB	-	-	-	-	-
ArgB	BVU_RS06775	putative acetylglutamate kinase	0	0	1
-	BVU_RS03000	N-acetyl-gamma-glutamyl-phosphate reductase	3	2	2
-	BVU_RS02995	acetylornithine aminotransferase	3	4	5
-	BVU_RS07505	-	-	-	-
-	BVU_RS20030	carbamyl phosphate synthetase	28	13	3
-	BVU_RS20035	glutamine-hydrolyzing carbamoyl phosphate synthetase III	2	5	4
-	BVU_RS20255	-	-	-	-
-	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase	84	29	5
-	BVU_RS02805	ornithine carbamoyltransferase	3	3	4
-	BVU_RS03005	argininosuccinate synthase	6	9	7
ArgH	-	-	-	-	-
L-asparagine biosynthesis I
AsnB	-	asparagine synthase B	-	-	-
L-asparagine biosynthesis II
-	BVU_RS20790	asparagine synthase A	6	6	0
L-aspartate biosynthesis
-	BVU_RS11395	aspartate 4-decarboxylase	0	0	1
L-cystein biosynthesis I
-	BVU_RS05520	serine acetyltransferase	0	0	1
CysK	BVU_RS02055	cysteine synthase A	0	2	3
L-cystein biosynthesis IV
-	BVU_RS05985	S-adenosylmethionine synthase	3	3	3
-	BVU_RS07105	2.1.1.- / S-adenosyl-methyltransferase	0	0	2
-	BVU_RS04530	S-adenosylhomocysteine nucleosidase	1	2	1
-	BVU_RS04535	S-ribosylhomocysteine lyase	0	0	2
-	-	4.2.1.22	-	-	-
-	BVU_RS10335	2.5.1.48 / homoserine O-succinyltransferase	0	0	1
L-glutamate biosynthesis II
-	BVU_RS01250	glutamate dehydrogenase	77	66	43
-	BVU_RS01255	glutamate dehydrogenase	23	17	10
L-glutamate biosynthesis III
	BVU_RS01275	glutamate dehydrogenase	0	10	12
-	BVU_RS01250	glutamate dehydrogenase	77	66	43
L-glutamine biosynthesis I
-	BVU_RS17720	glutamine synthetase	0	1	0
-	BVU_RS17970	glutamine synthetase	10	13	8
-	BVU_RS20050	glutamine synthetase	-	-	-
L-histidine biosynthesis
-	BVU_RS11880	ATP phosphoribosyltransferase	0	1	0
-	BVU_RS19330	-	-	-	-
HisA	BVU_RS19320	5.3.1.16	4	3	4
HisH	BVU_RS20510	4.3.2.-	1	0	0
HisB	BVU_RS11895	histidinol-phosphate aminotransferase	-	-	-
HisC	BVU_RS11890	2.6.1.9	-	-	-
-	BVU_RS17605		-	-	-
HisD	BVU_RS11885	histidinal dehydrogenase	-	-	-
L-homocysteine biosynthesis
-	BVU_RS10335	homoserine O-succinyltransferase	0	0	1
-	BVU_RS03900	O-acetylhomoserine (thiol)-lyase	4	2	1
-	BVU_RS13630	O-acetylhomoserine (thiol)-lyase	7	4	7
L-homoserine biosynthesis
-	BVU_RS10375	putative aspartokinase I-homoserine dehydrogenase	26	21	9
-	BVU_RS19340	aspartokinase	13	11	8
-	BVU_RS01045	aspartate-semialdehyde dehydrogenase	22	33	31
L-isoleucine biosynthesis I
-	BVU_RS19515	threonine ammonia-lyase	-	-	-
IlvB	BVU_RS12865	acetolactate synthase large subunit	2	0	0
IlvN	BVU_RS12870	acetohydroxyacid synthase small subunit	9	13	14
IlvC	BVU_RS12880	ketol-acid reductoisomerase	22	24	26
-	BVU_RS12860	dihydroxy-acid dehydratase	6	6	5
-	BVU_RS01360	branched-chain amino acid aminotransferase	7	24	18
L-isoleucine biosynthesis IV
-	BVU_RS02915	propanoate:CoA ligase (AMP-forming)	-	-	-
-	BVU_RS00045	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS19410	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS15255	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS07510	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS04995	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS04960	Long-chain-fatty-acid--CoA ligase	-	-	-
IlvB	BVU_RS12865	acetolactate synthase large subunit	2	0	0
IlvN	BVU_RS12870	acetohydroxyacid synthase small subunit	9	13	14
IlvC	BVU_RS12880	ketol-acid reductoisomerase	22	24	26
-	BVU_RS12860	dihydroxy-acid dehydratase	6	6	5
-	BVU_RS01360	branched-chain amino acid aminotransferase	7	24	18
L-leucine biosynthesis
-	BVU_RS10160	2-isopropylmalate synthase	9	11	8
-	BVU_RS10175	2-isopropylmalate synthase	0	1	0
LeuC	BVU_RS10165	3-isopropylmalate dehydratase large subunit	7	10	6
LeuD	BVU_RS10170	3-isopropylmalate dehydratase small subunit	1	0	0
LeuB	BVU_RS10180	3-isopropylmalate dehydrogenase	3	3	2
-	BVU_RS01360	branched-chain amino acid aminotransferase	7	24	18
L-lysine biosynthesis III
-	BVU_RS10375	putative aspartokinase I-homoserine dehydrogenase	26	21	6
-	BVU_RS19340	aspartokinase	13	11	8
-	BVU_RS01045	aspartate-semialdehyde dehydrogenase	22	33	31
-	BVU_RS16620	putative dihydrodipicolinate synthase	1	4	3
DapB	-	-	-	-	-
-	BVU_RS08435	putative oxidoreductase	22	40	68
LysA	BVU_RS19345	diaminopimelate decarboxylase	2	3	1
-	BVU_RS20260	-	-	-	-
L-lysine biosynthesis VI

Name	Locus tag	function/EC No.	1/2ODmax	ODmax	ODstat
5-aminoimidazole ribonucleotide biosynthesis II
-	BVU_RS04370	-	-	-	-
-	BVU_RS19210	-	-	-	-
-	BVU_RS20040	-	-	-	-
-	BVU_RS05540	phosphoribosylamine--glycine ligase	3	3	3
-	BVU_RS13930	phosphoribosylglycinamide formyltransferase 2	1	6	5
-	BVU_RS00400	putative phosphoribosylformylglycinamidine synthase	17	10	1
-	BVU_RS00475	putative phosphoribosylformylglycinamidine cyclo-ligase	1	2	1
adenine and adenosine salvage I
-	BVU_RS08145	purine nucleoside phosphorylase I	0	4	7
-	BVU_RS06135	adenine phosphoribosyltransferase	1	1	2
adenine and adenosine salvage IV
-	BVU_RS04245	-	-	-	-
adenosine deoxyriboculeotide de novo synthesis
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
CMP phosphorylation
-	BVU_RS09815	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
guanine and guanosin salvage
-	BVU_RS08145	purine nucleoside phosphorylase I	0	4	7
Hpt	BVU_RS08545	putative hypoxanthine guanine phosphoribosyltransferase	0	3	5
Xpt	BVU_RS12750	xanthine phosphoribosyltransferase	1	0	0
guanosine deoxyriboculeotide de novo synthesis
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
pyrimidine deoxyribonucleosides salvage
-	BVU_RS09765	cytidine/deoxycytidylate deaminase	0	2	3
-	BVU_RS09305	-	-	-	-
-	BVU_RS09885	putative thymidylate synthase B	1	0	1
-	BVU_RS09305	-	-	-	-
-	-	2.7.1.74	-	-	-
pyrimidine deoxyribonucleostide phosphorylation
-	BVU_RS09815	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	-	2.7.4.9/12/13;	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
pyrimidine deoxyriboculeotide de novo synthesis
-	-	3.6.1.15;	-	-	-
	BVU_RS00015	putative ribonucleoside reductase	8	5.75	2
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	BVU_RS07130	deoxyuridine 5'-triphosphate nucleotidohydrolase	1	0	1
-	BVU_RS01730	-	-	-	-
-	BVU_RS12965	-	-	-	-
-	BVU_RS09885	putative thymidylate synthase B	1	0	1
-	-	2.7.4.9/12/13;	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
pyrimidine nucleobases salvage I
-	BVU_RS04955	-	-	-	-
-	BVU_RS04990	-	-	-	-
pyrimidine ribonucleosides salvage I
	BVU_RS16775	cytidine/deoxycytidylate deaminase	0	2	3
-	BVU_RS11865	uridine kinase	0	0	1
-	-	2.7.1.213;	-	-	-
UMP biosynthesis II
-	BVU_RS20030	carbamoyl phosphate synthetase	28.25	13.25	3.25
-	BVU_RS20035	glutamine-hydrolyzing carbamoyl phosphate synthetase III	2.25	5.25	4.25
-	BVU_RS20255	-	-	-	-
-	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase	84	29	5
PyrB	-	aspartate carbamoyltransferase catalytic chain	0	2	0
-	BVU_RS16780	aspartate carbamoyltransferase regulatory chain	1	2	3
-	BVU_RS11365	dihydroorotase	0	0	1
-	BVU_RS19405	putative dihydroorotate dehydrogenase	0	3	2
-	BVU_RS04365	orotate phosphoribosyltransferase	13	36	48
PyrF	BVU_RS00485	orotidine 5'-phosphate decarboxylase	0	0	1.5
UMP biosynthesis III
-	BVU_RS20030	carbamyl phosphate synthetase	28.25	13.25	3.25
-	BVU_RS20035	glutamine-hydrolyzing carbamoyl phosphate synthetase III	2.25	5.25	4.25
-	BVU_RS20255	-	-	-	-
-	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase	84	29	5
PyrB	BVU_RS16775	aspartate carbamoyltransferase catalytic chain	0	2	0
-	BVU_RS16780	aspartate carbamoyltransferase regulatory chain	1	2	3
-	BVU_RS11365	dihydroorotase	0	0	1
-	BVU_RS16640	-	-	-	-
-	BVU_RS04365	orotate phosphoribosyltransferase	13	36	48
PyrF	BVU_RS00485	orotidine 5'-phosphate decarboxylase	0	0	1.5
UTP and CTP de novo biosynthesis
-	BVU_RS09490	uridylate kinase	1	1	1
-	BVU_RS09815	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	BVU_RS16855	CTP synthase	9.5	8.25	3.25

Name	Locustag	function/EC No.	1/2ODmax	ODmax	ODstat
fatty acid biosynthesis initiation I
AccC	-	-	-	-	-
FabD	BVU_RS19990	malonyl CoA-acyl carrier protein transacylase	5	9	6
-	BVU_RS02315	3-oxoacyl-[acyl-carrier-protein] synthase III	12	6	2
fatty acid elongation -- saturation
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
FabG		-	-	-	-
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG	BVU_RS10065	enoyl-[acyl-carrier-protein] reductase	10	15	20
FabG	-	-	-	-	-
-	BVU_RS05130	-	-	-	-
palmitate biosynthesis II
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
FabG		-	-	-	-
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG	-	-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
-	BVU_RS00045	-	-	-	-
-	BVU_RS19410	-	-	-	-
-	BVU_RS15255	-	-	-	-
-	BVU_RS07510	-	-	-	-
lipid IVA biosynthesis
-	BVU_RS00505	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase	0	1.75	3.5
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
-	BVU_RS00495	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	1	2.25	0.75
-	BVU_RS15065	-	-	-	-
-	BVU_RS02680	-	-	-	-
LpxB	BVU_RS09710	-	-	-	-
LpxK	BVU_RS08150	-	-	-	-
palmitoleate biosynthesis I
-	BVU_RS05130	-	-	-	-
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG		-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
CDP-diacylglycerol biosynthesis I
-	BVU_RS02595	-	-	-	-
-	-	2.3.1.15;	-	-	-
-	BVU_RS11350	-	-	-	-
-	BVU_RS09720	-	-	-	-
phophatidylethanolamine biosynthesis I
-	BVU_RS09540	-	-	-	-
-	BVU_RS09545	phosphatidylserine decarboxylase	0.75	0	0
gondoate biosynthesis I (anaerobic)
-	BVU_RS05130	-	-	-	-
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG		-	-	-	-
stearate biosynthesis II
-	BVU_RS05130	-	-	-	-
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG	-	-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
-	BVU_RS00045	-	-	-	-
-	BVU_RS19410	-	-	-	-
-	BVU_RS15255	-	-	-	-
-	BVU_RS07510	-	-	-	-
peptidoglycan biosynthesis I
MurA	-	-	-	-	-
-	BVU_RS11270	-	-	-	-
-	BVU_RS07065	-	-	-	-
Murl	-	-	-	-	-
MurD	-	-	-	-	-
-	BVU_RS07090	-	-	-	-
-	BVU_RS02785	D-alanine--D-alanine ligase	0	0.75	0
-	BVU_RS08970	-	-	-	-
-	BVU_RS02365	-	-	-	-
MraY	-	2.7.8.13;	-	-	-
MurG	-	-	-	-	-

Name

average 1/2ODmax

average ODmax

average ODstat

F23-30

3,6-dimethyl-2,5-piperazinedione

8265378.743

1.099494342E7

1.384175322E7

(4-hydroxyphenyl)acetate

1420991.782

4245243.065

adenosine

1.914616041E8

2.049224602E8

4.368890932E7

AMP

2.542298812E7

alanine

3.048153434E8

1023598628

4.595991406E8

beta-Alanine

1.076268625E7

1.472702677E7

1.153525451E7

arabinose

7.267107188E7

5.558992709E7

asparagine

9194929.216

1.065020677E8

4.63419194E7

aspartate

1336480732

2.561961123E9

1979001674

N-acetyl-aspartate

1.430374177E7

1.358601966E7

1.834177997E7

4-hydroxybutanoate

4341238.489

1.611925834E7

3.671945556E7

citraconic acid

3044486.818

2.246157863E7

3.030884869E7

citrate

2.312309536E7

137330468

8.736149751E7

cytosine

2.809813669E7

8.62736557E7

3.474310703E7

erythritol

5054322.738

1.778982275E7

1.638248006E7

erythronic acid

2.272937928E7

3.634991079E7

2.688512397E7

erythrose

2.787263181E7

5.955155986E7

6765894.403

ethanolamine

4.969040726E7

1.530971721E8

3.033750008E8

ethanolaminephosphate

2.546777747E7

2.813185905E7

9443448.536

fructose

1.850946281E8

1.257242206E8

fructose-6-phosphate

2.849009979E8

1.242458087E8

fumarate

2.404458386E8

5.637002336E8

6.521516803E8

gluconic-acid

2.568004851E8

1.181679281E8

9550974.311

N-acetyl-glucosamine

9768310.857

7213146.982

glucose-6-phosphate

4.067897086E8

1.828808347E8

glutamate

1340216244

6.658121568E9

1169145644

glutamine

2.056023878E8

4.190071894E8

2.240359272E8

2-hydroxy-glutarate

3.294905939E7

3.590857646E7

glyceraldehyde

7750331.635

2.298763835E7

1.335637885E7

glycerate

3.755884754E8

2.740662649E8

1.147235845E8

2-phosphoglycerate

4572553.126

3-phosphoglycerate

2.302342533E7

3.439023367E7

5846386.359

glycerol

4.661167241E7

6.570150232E7

6.856078056E7

glycerol-3-phosphate

1.041908498E7

1.718752623E8

1.772606967E8

glycine

6.209431422E8

2057670347

4.592510717E8

glycolate

1.405411682E7

2.059001147E7

1.808473331E7

homoserine

3.335082045E8

3.591716395E8

1.399917335E7

N-2-oxocaproyl-homoserine lactone

1.517760032E7

1.867238667E7

2.293308736E7

N-2-oxooctanyol-DL-homoserine lactone

11635.331750000001

N-hexanoyl-homoserine lactone

3740822.157

homoserine-lactone

1.809613475E7

1.95027542E7

2.570292888E7

indole-3-acetaldehyde

4383476.133

9365954

8288216.327

indole-3-acetic acid

4.691573849E7

7820113.983

indole-3-lactate

2186880.9

2630974.483

2594399.649

myoinositol-2-phosphate

1.775189535E7

2.390872067E7

5423904.234

isoleucine

1.374542193E8

3.199794331E8

1.217658453E8

lactate

4.274263196E8

8.536903754E8

9.656382479E8

leucine

5.790712841E8

1439535415

5.516541295E8

maleamate

4192487.17

5795711.583

5199904.97

malate

3.923954001E8

848322731

8.097098594E8

2-isopropylmalic acid

2.890969401E7

2-methyl-malate

6.080885221E7

1.079938159E8

4.788533355E7

maltose

1.326685341E8

133750122

1800785.279

3,4-dihydroxy-mandelic acid

8064132.172

8749595.731

1.079897095E7

mannose

4.487437963E8

252336952

1.393508464E7

mannose-6-phosphate

9.636200797E7

5.955190153E7

methionine

2034513.532

7.628279346E7

2.730399671E8

Nicotinamide

1.258987794E8

501164642

3.260022908E8

nicotinic acid

1.170017169E8

2.097302329E8

4.873414118E8

phenylacetate

2956646.363

4456889.651

9633215.127

phenylalanine

4.388546669E8

4.935537981E8

1.789371058E8

phenylpyruvate

2956401.783

3496928.418

2585520.354

phosphoenolpyruvate

7904362.188

1.402691499E7

5128633.264

proline

2.666568981E8

1511423646

1605577602

2-amino-2-methyl-3-hydroxy-propanoate

3.371460358E7

putrescine

1.005640698E7

1.171328886E7

pyroglutamate

2.540546723E9

4.104969694E9

3.284833895E9

pyrophosphate

9.711275107E7

pyruvate

5.764449038E7

1.054069723E8

4.67062416E7

3-hydroxypyruvate

2.813426578E7

3.874564615E7

4.709903788E7

rhamnose

5467552.28

7287586.92

ribitol

1000000000

ribose

694367707

5.328332125E8

4.384904984E8

sedoheptulose-7-phosphate

5.917838268E7

7.411755046E7

3993024.476

serine

1276441786

3.335129505E9

7.695622812E8

cycloserine

5.084750116E7

2.600599198E8

8.100619203E7

N-acetyl-serine

1.059336746E8

1.842237611E8

3-dehydroshikimate

2915323.859

3497219.62

1688258.611

spermine

3541465.43

4704480.265

3252199.329

succinate

2.657480135E9

4.484433305E9

5.284361116E9

threonine

1749332247

3.39003851E9

8.915184433E7

threose

3516783.548

4772561.199

5178304.532

thymine

589083380

6.178797086E8

2.814467823E8

tryptophan

2539672.872

4857143.382

6075927.328

tyrosine

9.550352555E7

1.368401247E8

7.821043712E7

Unknown#1325.8-pin-mhe_007

2.746316097E7

3.831566682E7

3.146717502E7

Unknown#1366.59-ppu-cja_010

1.028040972E8

1.286606871E8

3.83307523E7

Unknown#1366.9-pin-mhe_011

5.100790519E7

Unknown#1392.1-pin-mhe_012

8.392893011E7

Uracil

1702329403

2117311135

1641307740

uridine

1.474320764E7

8750848.652

valine

9.230785067E8

2.592221665E9

3.434458049E8

xylitol

2.239443265E7

xylose

1.166395907E7

1.05930369E7

3438379.921

xylulose

7.952552253E7

7.546167784E7

xylulose-5-phosphate

855942.3938

1592458.039

CoA	1/2ODmax				ODmax				Odstat
CoenzymeA	4912868	4693358	4415376	4029986	7999299	5436994	5471682	7341028	3722929	3119229	3701465	3818397
Acetyl-CoA	58415094	60965398	63465947	60060491	45393976	31968886	35167580	45404304	44039022	39014335	41993660	38573573
Propenoyl-CoA	2135768	2095049	1494035	1733782	337249	305428	301575	250793	223376	182202	258149	281767
Propanoyl-CoA	5023647	5226892	4527377	4287440	1943418	2347079	1925851	2219608	7656282	5159891	6943862	6861228
Butanoyl-CoA	4776301	5393140	4026315	5894770	20097739	17224231	12407080	17225271	14975138	14403527	11433604	11987066
Isobutanoyl-CoA	4371966	4922817	4109338	4505565	15840788	14356691	11994533	13954118	8893864	8921627	6932793	9596689
(S)-2-Methylbutanoyl-CoA	9949737	10129657	8731578	8150428	15483160	15620341	18433654	20650339	44850423	36776164	32778771	48635322
Isovaleryl-CoA	4999600	4500310	3911202	3374602	25918635	19124343	20376423	23534793	55823717	35807178	53743495	46561363
Pentanoyl-CoA	824233	868427	721083	755892	1771268	1402055	1438430	1969274	5972812	6884757	6884792	7280826
Malonyl-CoA	177622	217814	177321	233897	732199	626023	648105	713322	871181	1022431	866700	887095
Methylmalonyl-CoA	5123649	4195843	3916541	3763798	2875768	1995122	2569047	1923211	9979938	7408454	9096165	10471671
Succinyl-CoA	21169812	17919356	22625778	14636368	19358027	22797158	14771345	17849154	31131938	26989307	33768034	33003571
Cyclohexa-1,5-dienecarbonyl-CoA	1227884	1306538	925570	1214402	2339858	2739259	2490548	2597333	7394661	5144411	8170709	7629941
Cyclohex-1-ene-1-carboxyl-CoA	221606	177166	155359	182230	1090067	856545	745147	857469	595135	746863	741959	566189
Methylsuccinyl-CoA	430019	486722	340381	425041	396548	429238	333357	396585	485835	408756	350739	325660
C28H42N7O18P3S, similar to beta-(2-Furyl)propionyl-CoA	1739194	1817161	1652515	1545113	1034390	1076613	1304001	1434617	605293	588617	823728	772815
C29H41N8O17P3S, exact mass based	1956558	1959717	1510641	1436500	11001764	9401792	8029753	10627222	9750493	8677756	9005034	11810337
Phenylglyoxylyl-CoA	81301	97570	84085	88380	883414	781849	817047	1053451	1346654	1350960	1368696	1943608
C29H43N8O17P3S, similar to N-Methylanthraniloyl-CoA	3621909	4315683	2862026	3731336	3989842	4396538	3225252	3857268	1260793	990580	1201589	1246272
2,3-Dihydro-2,3-dihydroxybenzoyl-CoA	610018	585519	641224	594254	1103750	1019841	903896	818590	473518	456067	498651	496308

100

Name	average 1/2ODmax	average ODmax	average ODstat
(4-hydroxyphenyl)acetate	0	0	9289.599772
1,6-anhydro-glucose	13241.09054	21598.00354	5276.194721
1-O-methyl-alpha-glucopyranoside	120221.2645	22595.36598	0
1-pyrroline-2-carboxylate	11399.37926	12334.10381	12984.44374
2,4-dihydroxybutanoate	23100.79123	17651.50354	17132.32856
2-amino-2-methylpropane-1,3-diol	17292.52606	304397.5939	119436.4133
2-aminobutanoate	13801.57337	64058.93625	18782.03809
2-aminoisobutanoate	1846.437294	2522.104867	981.3441083
2-hydroxy-4-(methylthio)butanoate	1062.234506	4951.057944	21931.4075
2-hydroxybutanoate	0	21893.13429	20704.05855
2-hydroxy-glutarate	9126.16993	93357.42608	124743.2806
2-hydroxyisocaproate	0	6154.527856	7563.933773
2-isopropylmalic acid	9318.271904	32305.2513	26006.79167
2-methyl-malate	47322.16999	147337.0056	148228.6592
2-oxobutanoate	1706.542423	5182.400179	1972.253655
2-oxoglutarate	3825.152833	16351.44434	8373.118877
3,4-dihydroxybenzoate	2154.914701	2729.888575	1818.869325
3-aminoisobutanoate	51072.72964	53180.989	52068.8065
3-dehydroshikimate	0	4274.800011	2519.69768
3-hydroxybenzoate	1118.434005	1577.661383	1487.247318
3-hydroxyindole	145483.7357	145062.1962	161133.4753
3-hydroxyisobutanoate	1443.406185	2030.471884	4677.262604
3-hydroxyisovaleric acid	0	0	13350.90751
4-hydroxybenzoate	4347.213233	9265.616971	6439.181642
4-hydroxybutanoate	8341.833798	57319.67342	130046.4036
4-hydroxyphenylacetonitrile	1702.447467	1965.253942	2211.86605
4-oxobutanoate	0	2897.024902	2276.482706
4-oxopentanoic acid	12512.22651	14994.85326	15058.76188
6-deoxy-mannose	115413.7129	40962.12844	1007.050309
alanine	186437.366	675858.5938	377179.5159
aminomalonic acid	0	32029.00758	30254.65806
arabinonate	2480.46599	2885.912754	826.9863153
arabinono-1,4-lactone	6041.827278	8305.663046	0
arabinose	113599.8842	18742.39801	0
asparagine	0	3974.843049	0
aspartate	0	22641.73173	0
benzene-1,2,4-triol	2685.662953	6543.742449	9444.725211
benzoate	164377.0865	214497.77	234102.4865
beta-Alanine	111004.0078	17010.72479	25348.08442
butylamine	2583.330356	7800.087292	3031.189135
citraconic acid	13291.46357	20733.4688	14481.70315
citrate	19032.68054	31779.28151	26073.8232
cysteine	0	8649.927068	7935.665552
diethylene glycol	114075.8286	126325.7524	147065.7096
erythritol	6432.784773	20202.39974	35682.00093
erythronic acid	17425.01564	52475.53757	36736.3588
erythronic acid-1,4-lactone	5212.858485	16058.7725	12997.351
erythrose	21921.41473	78241.62423	44883.12959
ethanolamine	30960.5817	139357.8415	274287.2696
fructose	518667.171	284286.21	3647.387377
fumarate	74158.3667	89377.55297	77311.96085
galactose	287798.7167	136190.6944	0
gluconic-acid	53450.97373	24254.20329	5112.018837
glucose	1401777.391	680722.0745	148902.9758
glutamine	96326.14762	126582.3145	142426.8809
glyceraldehyde	9937.889679	26075.91615	15092.50598
glycerate	38642.76494	138259.5499	57055.02788
glycerol-3-phosphate	0	2377.851981	1843.756899
glycine	25679.78888	117986.9177	76740.94961
glycolate	7575.441393	14218.2835	10748.57535
hydrocinnamic acid	18962.46781	28176.20618	28493.75941
hydroquinone	5964.373506	1497.075992	1384.895708
hydroxylamine	42642.97452	54994.37608	55226.30733
indole-3-lactate	0	510.5191295	568.7783619
isocaproate	0	5383.709628	3284.426331
isoleucine	16528.71098	38714.57974	18782.29433
isomaltose*	285.1419036	630.276348	0
lactate	782860.4662	994265.4398	1215024.733
laminaribiose*	3458.983938	8499.335859	606.5945435
leucine	0	54179.53124	24567.30548
malate	415601.0876	965945.4366	945762.7512
maleate	7494.438311	42037.55822	21269.74702
malonamide	313710.7895	438380.1751	386739.6702
malonic acid	0	1656.04694	1719.925459
mannonic acid-1,4-lactone	0	492.9970468	0
mannose	159580.4492	47561.44195	0
mannosylglycerate	8411.381146	0	0
methyl 3,6-anhydro-alpha-galactopyranoside	3513.663272	4304.23687	3661.989529
myo-inositol	0	850.0713329	0
N-acetyl-galactosamine	3671.443836	629.3391122	0
N-acetyl-glucosamine	4287.622265	1006.047384	0
N-acetyl-phenylalanine	0	0	972.2001417
nicotinic acid	21321.99894	26841.36041	121129.9429
oxalate	9393.353043	11625.98082	10514.72433
phenylpyruvate	2495.374715	4905.818014	4074.834533
proline	54337.72263	963555.2114	789359.9671
propane-1,2-diol	12926.23761	15962.30631	31277.14495
propane-1,3-diol	105286.998	53200.53431	0
putrescine	8087.277356	0	0
pyridoxal	0	1363.784526	519.1638029
pyroglutamate	51637.52579	282849.0538	157454.2446
pyrrole-2-carboxylate	6045.629836	12082.07825	8520.154384
pyruvate	126135.6008	41206.06283	13904.45386
quinate	1138.771335	1889.73512	1362.196213
ribonate	3637.443671	6401.706855	4352.95201
ribose	35320.99403	54534.9951	38510.98767
shikimic acid	0	130438.5169	74191.88895
sorbitol	7360.274366	0	0
succinate	2298.598083	2452304.88	2784346.948