Additional Data related to the catabolsim of P. vulgatus

Selected Cell

Cell:

Value:

Outline 1P_vulgatus_ATCC_8482 2Proteomic_data 3Amino_acids 4Nucleotide 5Fatty_acdis_cell_wall 6Metabolites 7Metabolome_CoA 8Exo_Metabolome



Tab	Name	Contents
1	1P_vulgatus_ATCC_8482	Genome of P. vulgatus ATCC 8482
2	2Proteomics_data	Identified proteins with peptide counts
3	3Amino_acids	BioCyc-predicted biosynthesis of amino acids including identified proteins
4	4Nucleotide	BioCyc-predicted biosynthesis of nucleotides including identified proteins
5	5Fatty_acdis_cell_wall	BioCyc-predicted biosynthesis of fatty acids and cell wall including identified proteins
6	6Metabolites	Metabolites of the intracellular metabolome
7	7Metabolome_CoA	CoAs of the metabolome
8	8Exo_Metabolome	Metabolites of the extracellular metabolome

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BVU_RS10450	BVU_2064	2675579	2675935	118	c	BVU_RS10450		helix-turn-helix transcriptional regulator
BVU_RS10455	BVU_2065	2676125	2676655	176		BVU_RS10455		DJ-1/PfpI family protein
BVU_RS10460	BVU_2066	2676724	2677899	391		BVU_RS10460		pyridoxal phosphate-dependent aminotransferase
BVU_RS10465	BVU_2067	2677900	2678901	333	c	BVU_RS10465		AI-2E family transporter
BVU_RS10470	BVU_2068	2678961	2679911	316	c	BVU_RS10470		tetratricopeptide repeat protein
BVU_RS10475	BVU_2069	2679926	2682139	737	c	BVU_RS10475		beta-N-acetylglucosaminidase domain-containing protein
BVU_RS10480	BVU_2070	2682186	2684081	631	c	BVU_RS10480		RecQ family ATP-dependent DNA helicase
BVU_RS10485	BVU_2071	2684199	2685920	573	c	recJ		single-stranded-DNA-specific exonuclease RecJ
BVU_RS10490	BVU_2072	2686086	2687297	403	c	BVU_RS10490		aminopeptidase
BVU_RS10495	BVU_2073	2687326	2688717	463	c	BVU_RS10495		aminopeptidase P family protein
BVU_RS10500	BVU_2074	2689047	2689901	284		BVU_RS10500		patatin family protein
BVU_RS10505	BVU_2075	2690073	2691430	451.6666666666667		BVU_RS10505		transposase
BVU_RS10510	BVU_2077	2691730	2692530	266	c	BVU_RS10510		hypothetical protein
BVU_RS10515	BVU_2078	2692722	2694257	511	c	rny		ribonuclease Y
BVU_RS10520	BVU_2079	2694358	2694651	97	c	BVU_RS10520		cell division protein ZapA
BVU_RS10525	BVU_2080	2694681	2694974	97	c	BVU_RS10525		hypothetical protein
BVU_RS21565	BVU_2081	2695147	2695509	120	c	BVU_RS21565		YbaN family protein
BVU_RS10535	BVU_2082	2695644	2695976	110		queD	4.1.2.50	6-carboxytetrahydropterin synthase QueD
BVU_RS10540	BVU_2083	2695963	2696508	181		BVU_RS10540		7-carboxy-7-deazaguanine synthase QueE
BVU_RS10550	BVU_2085	2696708	2697301	197	c	BVU_RS10550		uracil-DNA glycosylase family protein
BVU_RS10555	BVU_2086	2697316	2697942	208	c	BVU_RS10555		hypothetical protein
BVU_RS10560	BVU_2087	2698076	2699476	466	c	BVU_RS10560		alanine:cation symporter family protein
BVU_RS10565	BVU_2088	2699482	2700129	215	c	BVU_RS10565		ATP-binding protein
BVU_RS10570	BVU_2089	2700262	2704221	1319		BVU_RS10570		helix-turn-helix domain-containing protein
BVU_RS10575	BVU_2090	2704371	2704649	92		BVU_RS10575		N-acetyltransferase
BVU_RS10580	BVU_2091	2704724	2706019	431	c	BVU_RS10580	4.3.1.17	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha
BVU_RS10585	BVU_2092	2706211	2708244	677	c	BVU_RS10585		thioredoxin family protein
BVU_RS10590	BVU_2093	2708377	2710128	583	c	BVU_RS10590		AraC family transcriptional regulator
BVU_RS10600	BVU_2095	2710586	2711809	407		BVU_RS10600		site-specific integrase
BVU_RS10605	BVU_2097	2712307	2713494	395		BVU_RS10605		hypothetical protein
BVU_RS10610	BVU_2098	2713472	2717686	1404		BVU_RS10610		serine protease
BVU_RS21575		2718602	2718927	107.66666666666667		BVU_RS21575		hypothetical protein
BVU_RS10615		<2719043	>2719227		c	BVU_RS10615		hypothetical protein
BVU_RS10620	BVU_2102	2719488	2721467	659	c	BVU_RS10620		hypothetical protein
BVU_RS10625	BVU_2103	2721483	2722355	290	c	BVU_RS10625		hypothetical protein
BVU_RS10630	BVU_2104	2722358	2723260	300	c	BVU_RS10630		hypothetical protein
BVU_RS10635	BVU_2105	2723262	2724200	312	c	BVU_RS10635		hypothetical protein
BVU_RS10640	BVU_2106	2724206	2725492	428	c	BVU_RS10640		metallophosphoesterase
BVU_RS10645	BVU_2107	2726135	2726431	98		BVU_RS10645		DNA-binding protein
BVU_RS10650	BVU_2108	2726437	2726766	109		BVU_RS10650		hypothetical protein
BVU_RS10655	BVU_2109	2726929	2727951	340	c	BVU_RS10655		hypothetical protein
BVU_RS10660	BVU_2110	2728033	2731995	1320	c	BVU_RS10660		DNA methylase
BVU_RS22455	BVU_2111	2732149	2732328	59	c	BVU_RS22455		hypothetical protein
BVU_RS10670	BVU_2112	2732318	2732764	148	c	BVU_RS10670		DUF1896 domain-containing protein
BVU_RS10675	BVU_2113	2732855	2734144	429	c	BVU_RS10675		DUF3945 domain-containing protein
BVU_RS10680	BVU_2114	<2734247	2735248		c	BVU_RS10680		site-specific integrase
BVU_RS10685	BVU_2115	2735610	2736713	367		BVU_RS10685		FRG domain-containing protein
BVU_RS10690	BVU_2116	2736845	2738854	669	c	BVU_RS10690		YWFCY domain-containing protein
BVU_RS10695	BVU_2119	2738900	2740075	391	c	BVU_RS10695		relaxase/mobilization nuclease domain-containing protein
BVU_RS10700	BVU_2120	2740224	2740469	81	c	BVU_RS10700		hypothetical protein
BVU_RS22530	BVU_2121	2740482	2740658	58	c	BVU_RS22530		hypothetical protein
BVU_RS21585		2740748	2740957	69	c	BVU_RS21585		hypothetical protein
BVU_RS21590		2741509	2741703	64		BVU_RS21590		conjugal transfer protein TraA
BVU_RS10710	BVU_2124	2741767	2742177	136		BVU_RS10710		ParA family protein
BVU_RS10715	BVU_2125	2742180	2742674	164		BVU_RS10715		DUF3408 domain-containing protein
BVU_RS10720	BVU_2126	2742678	2743610	310		BVU_RS10720		hypothetical protein
BVU_RS10725	BVU_2127	2743939	2744394	151		BVU_RS10725		hypothetical protein
BVU_RS10730	BVU_2128	2744416	2744844	142		BVU_RS10730		hypothetical protein
BVU_RS10735	BVU_2129	2745117	2745335	72		BVU_RS10735		DUF4134 family protein
BVU_RS10745	BVU_2131	2745951	2747606	551		ltrA	2.7.7.49	group II intron reverse transcriptase/maturase
BVU_RS10750		2747603	2747845	80		BVU_RS10750		DUF4134 family protein
BVU_RS22205		2747869	2748189	106		BVU_RS22205		DUF4133 domain-containing protein
BVU_RS21610		2748193	2748363	56		BVU_RS21610		DUF3875 domain-containing protein
BVU_RS10760	BVU_2133	2748379	2750223	614		BVU_RS10760		TraG family conjugative transposon ATPase
BVU_RS10765	BVU_2134	2750847	2752502	551		ltrA	2.7.7.49	group II intron reverse transcriptase/maturase
BVU_RS10770	BVU_2135	2752505	2753098	197		BVU_RS10770		TraG family conjugative transposon ATPase
BVU_RS10775	BVU_2136	2753253	2753528	91		BVU_RS10775		hypothetical protein
BVU_RS10780	BVU_2137	2753533	2753691	52		BVU_RS10780		DUF4141 domain-containing protein
BVU_RS10785	BVU_2138	<2753731	2754162			BVU_RS10785		conjugal transfer protein TraI
BVU_RS10790	BVU_2139	2754191	2755204	337		traJ		conjugative transposon protein TraJ
BVU_RS10795	BVU_2140	2755229	2755852	207		traK		conjugative transposon protein TraK
BVU_RS10805	BVU_2142	2756116	2756967	283		BVU_RS10805		conjugative transposon protein TraM
BVU_RS10810	BVU_2143	2756980	2757384	134		traM		conjugative transposon protein TraM
BVU_RS10815	BVU_2144	2757389	2758288	299		traN		conjugative transposon protein TraN
BVU_RS10820	BVU_2145	2758307	2758897	196		BVU_RS10820		conjugal transfer protein TraO
BVU_RS10825	BVU_2146	2758923	2759384	153		BVU_RS10825		DUF3872 domain-containing protein
BVU_RS10830	BVU_2147	2759541	2760452	303		BVU_RS10830	3.4.24.-	M48 family metalloprotease
BVU_RS10835	BVU_2148	2760474	2760935	153	c	BVU_RS10835		hypothetical protein
BVU_RS10840	BVU_2149	2761295	2761534	79	c	BVU_RS10840		hypothetical protein
BVU_RS10845	BVU_2150	2761665	2763599	644	c	BVU_RS10845		ParB/RepB/Spo0J family partition protein
BVU_RS10850	BVU_2151	2763626	2764216	196	c	BVU_RS10850		hypothetical protein
BVU_RS10855	BVU_2152	2764281	2765294	337	c	BVU_RS10855		hypothetical protein
BVU_RS21615	BVU_2153	2765327	2765620	97	c	BVU_RS21615		hypothetical protein
BVU_RS10865	BVU_2154	2766797	2770867	1356	c	BVU_RS10865		hybrid sensor histidine kinase/response regulator transcription factor
BVU_RS10870	BVU_2155	2771111	2773225	704		BVU_RS10870		hypothetical protein
BVU_RS10875		2773426	2773761	111		BVU_RS10875		hypothetical protein
BVU_RS10880	BVU_2157	2773982	2777272	1096		BVU_RS10880		TonB-dependent receptor
BVU_RS10885	BVU_2158	2777285	2779330	681		BVU_RS10885		RagB/SusD family nutrient uptake outer membrane protein
BVU_RS10890	BVU_2160	2779745	2781445	566		BVU_RS10890		polysaccharide deacetylase family protein
BVU_RS10895	BVU_2161	2781691	2783664	657		BVU_RS10895		DUF4978 domain-containing protein
BVU_RS10900	BVU_2162	2783698	2786034	778		BVU_RS10900		DUF4982 domain-containing protein
BVU_RS10905	BVU_2163	2786055	2787470	471		BVU_RS10905		glycoside hydrolase family 28 protein
BVU_RS10910	BVU_2164	2787645	2791712	1355	c	BVU_RS10910		hybrid sensor histidine kinase/response regulator transcription factor
BVU_RS10915	BVU_2165	2792116	2792913	265		BVU_RS10915		DUF4469 domain-containing protein
BVU_RS10920	BVU_2166	2793206	2796487	1093		BVU_RS10920		SusC/RagA family TonB-linked outer membrane protein
BVU_RS10925	BVU_2167	2796501	2798462	653		BVU_RS10925		RagB/SusD family nutrient uptake outer membrane protein
BVU_RS22535		2798727	>2799065			BVU_RS22535		hypothetical protein
BVU_RS22210		2799060	>2799581			BVU_RS22210		glycoside hydrolase
BVU_RS22215	BVU_2169	2800215	2801666	483		BVU_RS22215		family 43 glycosylhydrolase
BVU_RS10940	BVU_2170	2801743	2803269	508		BVU_RS10940		beta-glycosidase

100

				Average [peptide count]
Accession No.	Locustag old	Locustag	Genome predicted funtion	1/2ODmax	ODmax	ODstat
ABR37733.1	BVU_0003	BVU_RS00015	putative ribonucleoside reductase [Phocaeicola vulgatus ATCC 8482]	8	5.75	2
ABR37734.1	BVU_0004	BVU_RS00020	putative exported protein [Phocaeicola vulgatus ATCC 8482]	2	0	0
ABR37741.1	BVU_0011	BVU_RS00060	putative 50S ribosomal protein L9 [Phocaeicola vulgatus ATCC 8482]	14	13.75	13
ABR37742.1	BVU_0012	BVU_RS00065	30S ribosomal protein S18 [Phocaeicola vulgatus ATCC 8482]	71	56.25	69
ABR37743.1	BVU_0013	BVU_RS00070	30S ribosomal protein S6 [Phocaeicola vulgatus ATCC 8482]	10.5	16.25	16.75
ABR37745.1	BVU_0015	BVU_RS00085	two-component system response regulator [Phocaeicola vulgatus ATCC 8482]	24.75	59.75	69.75
ABR37746.1	BVU_0016	BVU_RS00090	two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482]	5.25	1.25	2.25
ABR37747.1	BVU_0017	BVU_RS00095	putative elongation factor G [Phocaeicola vulgatus ATCC 8482]	0	36	17.75
ABR37776.1	BVU_0046	BVU_RS00240	phosphoglucomutase/phosphomannomutase [Phocaeicola vulgatus ATCC 8482]	1.75	5.5	5.25
ABR37803.1	BVU_0073	BVU_RS00375	DnaJ domain protein [Phocaeicola vulgatus ATCC 8482]	0	1	1
ABR37808.1	BVU_0078	BVU_RS00400	putative phosphoribosylformylglycinamidine synthase [Phocaeicola vulgatus ATCC 8482]	16.5	9.75	1
ABR37812.1	BVU_0082	BVU_RS00420	putative secreted protein [Phocaeicola vulgatus ATCC 8482]	2.75	1.25	0
ABR37814.1	BVU_0084	BVU_RS00430	putative endonuclease/exonuclease/phosphatase family protein [Phocaeicola vulgatus ATCC 8482]	0.75	0	3
ABR37815.1	BVU_0085	BVU_RS00435	glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482]	4.75	6.5	8.5
ABR37816.1	BVU_0086	BVU_RS00440	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	14.75	18	9.75
ABR37822.1	BVU_0092	BVU_RS00475	putative phosphoribosylformylglycinamidine cyclo-ligase [Phocaeicola vulgatus ATCC 8482]	0.75	1.75	0.5
ABR37825.1	BVU_0095	BVU_RS00485	orotidine 5'-phosphate decarboxylase [Phocaeicola vulgatus ATCC 8482]	0	0	1.5
ABR37827.1	BVU_0097	BVU_RS00495	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Phocaeicola vulgatus ATCC 8482]	1	2.25	0.75
ABR37828.1	BVU_0098	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Phocaeicola vulgatus ATCC 8482]	32.75	15.25	8.25
ABR37829.1	BVU_0099	BVU_RS00505	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482]	0	1.75	3.5
ABR37853.1	BVU_0123	BVU_RS00625	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	3.25	4.75
ABR37871.1	BVU_0143	BVU_RS00725	GTP cyclohydrolase II [Phocaeicola vulgatus ATCC 8482]	3.25	3	3.5
ABR37872.1	BVU_0144	BVU_RS00730	aspartate aminotransferase [Phocaeicola vulgatus ATCC 8482]	20.5	20.5	20.25
ABR37874.1	BVU_0146	BVU_RS00745	5'-nucleotidase precursor [Phocaeicola vulgatus ATCC 8482]	1	0.5	0
ABR37875.1	BVU_0147	BVU_RS00750	putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase [Phocaeicola vulgatus ATCC 8482]	3	2	1.5
ABR37876.1	BVU_0148	BVU_RS00755	50S ribosomal protein L19 [Phocaeicola vulgatus ATCC 8482]	16.5	24	29
ABR37885.1	BVU_0157	BVU_RS00815	conserved protein, with a weak D-galactarate dehydratase/altronate hydrolase domain [Phocaeicola vulgatus ATCC 8482]	0	1	0
ABR37897.1	BVU_0169	BVU_RS00870	putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482]	7	0	6.25
ABR37919.1	BVU_0191	BVU_RS00975	ROK family transcriptional repressor, with glucokinase domain [Phocaeicola vulgatus ATCC 8482]	8.25	12.5	15.75
ABR37923.1	BVU_0195	BVU_RS00995	membrane fusion efflux protein [Phocaeicola vulgatus ATCC 8482]	14.5	10	12.25
ABR37924.1	BVU_0196	BVU_RS01000	putative outer membrane efflux protein [Phocaeicola vulgatus ATCC 8482]	1.75	2.5	2
ABR37926.1	BVU_0198	BVU_RS01010	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	1.75	4.25
ABR37928.1	BVU_0200	BVU_RS01020	putative alcohol dehydrogenase [Phocaeicola vulgatus ATCC 8482]	0	0	1
ABR37929.1	BVU_0201	BVU_RS01025	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	4.5	4.5
ABR37933.1	BVU_0205	BVU_RS01045	aspartate-semialdehyde dehydrogenase [Phocaeicola vulgatus ATCC 8482]	22.25	32.75	31.25
ABR37934.1	BVU_0206	BVU_RS01050	putative FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [Phocaeicola vulgatus ATCC 8482]	8.25	5	5.5
ABR37935.1	BVU_0207	BVU_RS01055	glycyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482]	4	5.75	2
ABR37960.1	BVU_0238	BVU_RS01205	putative membrane fusion protein transporter [Phocaeicola vulgatus ATCC 8482]	10.75	7.25	6.75
ABR37963.1	BVU_0241	BVU_RS01220	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482]	2	2.75	1.5
ABR37964.1	BVU_0242	BVU_RS01225	outer membrane protein oprM precursor [Phocaeicola vulgatus ATCC 8482]	35.25	11.5	8
ABR37965.1	BVU_0243	BVU_RS01230	AcrB/AcrD family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482]	7	1	1.75
ABR37966.1	BVU_0244	BVU_RS01235	AcrA/AcrE family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482]	50	24	20
ABR37967.1	BVU_0245	BVU_RS01240	NADP-dependent malate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	17.5	23.25	11.75
ABR37968.1	BVU_0246	BVU_RS01250	NADP-specific glutamate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	76.5	66.25	43
ABR37969.1	BVU_0247	BVU_RS01255	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	23.25	16.5	9.75
ABR37970.1	BVU_0248	BVU_RS01260	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	23.25	13	15.25
ABR37971.1	BVU_0249	BVU_RS01265	hypothetical protein BVU_0249 [Phocaeicola vulgatus ATCC 8482]	58.5	38.25	62.75
ABR37973.1	BVU_0251	BVU_RS01275	NAD-specific glutamate dehydrogenase 1 [Phocaeicola vulgatus ATCC 8482]	0	10.25	11.75
ABR37974.1	BVU_0252	BVU_RS01280	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	1	1	0
ABR37978.1	BVU_0256	BVU_RS01300	malate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	56.5	72	86
ABR37979.1	BVU_0257	BVU_RS01305	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	22	10.75	15.25
ABR37983.1	BVU_0263	BVU_RS01330	lipoprotein [Phocaeicola vulgatus ATCC 8482]	64	61.5	65.25
ABR37986.1	BVU_0266	BVU_RS01345	Mrp/Nbp35 family ATP-binding protein [Phocaeicola vulgatus ATCC 8482]	3.75	4.75	7.75
ABR37988.1	BVU_0268	BVU_RS01355	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	8.75	2.25	6
ABR37989.1	BVU_0269	BVU_RS01360	branched-chain amino acid aminotransferase [Phocaeicola vulgatus ATCC 8482]	6.75	23.75	17.5
ABR38002.1	BVU_0282	BVU_RS01425	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	1	1.25	1.75
ABR38018.1	BVU_0298	BVU_RS01520	dTDP-glucose 4,6-dehydratase [Phocaeicola vulgatus ATCC 8482]	2	6.5	6.5
ABR38029.1	BVU_0309	BVU_RS01575	putative methylmalonyl-CoA mutase small subunit [Phocaeicola vulgatus ATCC 8482]	11.5	7.75	5
ABR38030.1	BVU_0310	BVU_RS01580	methylmalonyl-CoA mutase large subunit [Phocaeicola vulgatus ATCC 8482]	16.25	19	6.5
ABR38035.1	BVU_0315	BVU_RS01605	putative two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482]	1.5	1.75	1
ABR38036.1	BVU_0316	BVU_RS01610	putative membrane transport protein [Phocaeicola vulgatus ATCC 8482]	2.5	0	0.75
ABR38037.1	BVU_0317	BVU_RS01615	putative cation efflux pump [Phocaeicola vulgatus ATCC 8482]	0	0.75	0
ABR38038.1	BVU_0318	BVU_RS01620	putative cation efflux pump [Phocaeicola vulgatus ATCC 8482]	1.5	5.25	3.5
ABR38039.1	BVU_0319	BVU_RS01625	outer membrane efflux protein oprM precursor [Phocaeicola vulgatus ATCC 8482]	2	3.25	8.5
ABR38040.1	BVU_0320	BVU_RS01630	hypothetical protein BVU_0320 [Phocaeicola vulgatus ATCC 8482]	0	2.75	3.25
ABR38045.1	BVU_0325	BVU_RS01655	electron transfer flavoprotein beta-subunit [Phocaeicola vulgatus ATCC 8482]	7	15.75	14.5
ABR38046.1	BVU_0326	BVU_RS01660	electron transfer flavoprotein alpha-subunit [Phocaeicola vulgatus ATCC 8482]	1.25	1.75	0
ABR38048.1	BVU_0328	BVU_RS01670	acyl-CoA dehydrogenase [Phocaeicola vulgatus ATCC 8482]	8.25	7	3.5
ABR38049.1	BVU_0329	BVU_RS01675	putative histidine decarboxylase [Phocaeicola vulgatus ATCC 8482]	0	4.75	6
ABR38050.1	BVU_0330	BVU_RS01680	putative phenylacetic acid degradation protein [Phocaeicola vulgatus ATCC 8482]	0	0	0.75
ABR38051.1	BVU_0331	BVU_RS01685	putative DNA mismatch repair protein [Phocaeicola vulgatus ATCC 8482]	0	1	1.25
ABR38060.1	BVU_0340	BVU_RS01735	putative oxidoreductase [Phocaeicola vulgatus ATCC 8482]	8.5	8.25	6
ABR38064.1	BVU_0345	BVU_RS01760	60 kDa chaperonin [Phocaeicola vulgatus ATCC 8482]	46.25	82.75	73
ABR38065.1	BVU_0346	BVU_RS01765	10 kDa chaperonin [Phocaeicola vulgatus ATCC 8482]	21.75	31.5	36.75
ABR38070.1	BVU_0351	BVU_RS01790	histidyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482]	5.75	7	7
ABR38080.1	BVU_0361	BVU_RS01845	3,4-dihydroxy-2-butanone 4-phosphate synthase [Phocaeicola vulgatus ATCC 8482]	3.5	2.5	2.25
ABR38092.1	BVU_0373	BVU_RS01905	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	9	14	15.75
ABR38093.1	BVU_0374	BVU_RS01910	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	3.25	2	4
ABR38094.1	BVU_0375	BVU_RS01915	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	2.25	1.25	2
ABR38096.1	BVU_0377	BVU_RS01920	peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Phocaeicola vulgatus ATCC 8482]	0	2	0
ABR38099.1	BVU_0380	BVU_RS01935	two-component system sensor histidine kinase, with response regulator receiver domain [Phocaeicola vulgatus ATCC 8482]	2.75	0	0
ABR38103.1	BVU_0384	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase [Phocaeicola vulgatus ATCC 8482]	20	23.75	27.75
ABR38113.1	BVU_0395	BVU_RS02010	hypothetical protein BVU_0395 [Phocaeicola vulgatus ATCC 8482]	10	4.5	5.5
ABR38120.1	BVU_0402	BVU_RS02055	putative cysteine synthase [Phocaeicola vulgatus ATCC 8482]	0	1.5	2.75
ABR38123.1	BVU_0408	BVU_RS02085	tryptophanyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482]	3.25	2.25	0
ABR38124.1	BVU_0409	BVU_RS02090	hypothetical protein BVU_0409 [Phocaeicola vulgatus ATCC 8482]	19	7.5	8.5
ABR38125.1	BVU_0410	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase [Phocaeicola vulgatus ATCC 8482]	83.75	29	4.75
ABR38127.1	BVU_0412	BVU_RS02105	putative protein disulfide isomerase [Phocaeicola vulgatus ATCC 8482]	0	0	0.75
ABR38129.1	BVU_0414	BVU_RS02115	major outer membrane protein OmpA [Phocaeicola vulgatus ATCC 8482]	417.25	912.25	1338.25
ABR38135.1	BVU_0420	BVU_RS02145	CysQ, sulfite synthesis pathway protein [Phocaeicola vulgatus ATCC 8482]	0	0.75	0
ABR38136.1	BVU_0421	BVU_RS02150	conserved hypothetical exported protein [Phocaeicola vulgatus ATCC 8482]	2.5	1.5	1.25
ABR38137.1	BVU_0422	BVU_RS02155	DNA mismatch repair protein mutL [Phocaeicola vulgatus ATCC 8482]	0	3	4.5
ABR38138.1	BVU_0423	BVU_RS02160	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	0	3
ABR38140.1	BVU_0425	BVU_RS02170	peptidyl-prolyl cis-trans isomerase [Phocaeicola vulgatus ATCC 8482]	7.75	9	6.75
ABR38141.1	BVU_0426	BVU_RS02175	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	5	0.75	0
ABR38143.1	BVU_0428	BVU_RS02185	inosine-5'-monophosphate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	25	28.75	28.75
ABR38157.1	BVU_0442	BVU_RS02265	ATP-dependent DNA helicase recQ [Phocaeicola vulgatus ATCC 8482]	9	12	4.25
ABR38158.1	BVU_0443	BVU_RS02270	ATP-dependent Clp protease ATP-binding subunit [Phocaeicola vulgatus ATCC 8482]	3.5	4.5	3.5

100

Name	Locus tag	Function/EC No.	1/2ODmax	ODmax	ODstat
glycine biosynthesis I
GlyA	BVU_RS16795	serine hydroxymethyltransferase	7	18	18
glycine biosynthesis II
GcvP	BVU_RS15125	glycine dehydrogenase	0	2	0
L-alanine biosynthesis I
-	BVU_RS06885	cysteine desulfurase	0	0	1
L-arginine biosynthesis (via L-ornithine)
ArgB	-	-	-	-	-
ArgB	BVU_RS06775	putative acetylglutamate kinase	0	0	1
-	BVU_RS03000	N-acetyl-gamma-glutamyl-phosphate reductase	3	2	2
-	BVU_RS02995	acetylornithine aminotransferase	3	4	5
-	BVU_RS07505	-	-	-	-
-	BVU_RS20030	carbamyl phosphate synthetase	28	13	3
-	BVU_RS20035	glutamine-hydrolyzing carbamoyl phosphate synthetase III	2	5	4
-	BVU_RS20255	-	-	-	-
-	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase	84	29	5
-	BVU_RS02805	ornithine carbamoyltransferase	3	3	4
-	BVU_RS03005	argininosuccinate synthase	6	9	7
ArgH	-	-	-	-	-
L-asparagine biosynthesis I
AsnB	-	asparagine synthase B	-	-	-
L-asparagine biosynthesis II
-	BVU_RS20790	asparagine synthase A	6	6	0
L-aspartate biosynthesis
-	BVU_RS11395	aspartate 4-decarboxylase	0	0	1
L-cystein biosynthesis I
-	BVU_RS05520	serine acetyltransferase	0	0	1
CysK	BVU_RS02055	cysteine synthase A	0	2	3
L-cystein biosynthesis IV
-	BVU_RS05985	S-adenosylmethionine synthase	3	3	3
-	BVU_RS07105	2.1.1.- / S-adenosyl-methyltransferase	0	0	2
-	BVU_RS04530	S-adenosylhomocysteine nucleosidase	1	2	1
-	BVU_RS04535	S-ribosylhomocysteine lyase	0	0	2
-	-	4.2.1.22	-	-	-
-	BVU_RS10335	2.5.1.48 / homoserine O-succinyltransferase	0	0	1
L-glutamate biosynthesis II
-	BVU_RS01250	glutamate dehydrogenase	77	66	43
-	BVU_RS01255	glutamate dehydrogenase	23	17	10
L-glutamate biosynthesis III
	BVU_RS01275	glutamate dehydrogenase	0	10	12
-	BVU_RS01250	glutamate dehydrogenase	77	66	43
L-glutamine biosynthesis I
-	BVU_RS17720	glutamine synthetase	0	1	0
-	BVU_RS17970	glutamine synthetase	10	13	8
-	BVU_RS20050	glutamine synthetase	-	-	-
L-histidine biosynthesis
-	BVU_RS11880	ATP phosphoribosyltransferase	0	1	0
-	BVU_RS19330	-	-	-	-
HisA	BVU_RS19320	5.3.1.16	4	3	4
HisH	BVU_RS20510	4.3.2.-	1	0	0
HisB	BVU_RS11895	histidinol-phosphate aminotransferase	-	-	-
HisC	BVU_RS11890	2.6.1.9	-	-	-
-	BVU_RS17605		-	-	-
HisD	BVU_RS11885	histidinal dehydrogenase	-	-	-
L-homocysteine biosynthesis
-	BVU_RS10335	homoserine O-succinyltransferase	0	0	1
-	BVU_RS03900	O-acetylhomoserine (thiol)-lyase	4	2	1
-	BVU_RS13630	O-acetylhomoserine (thiol)-lyase	7	4	7
L-homoserine biosynthesis
-	BVU_RS10375	putative aspartokinase I-homoserine dehydrogenase	26	21	9
-	BVU_RS19340	aspartokinase	13	11	8
-	BVU_RS01045	aspartate-semialdehyde dehydrogenase	22	33	31
L-isoleucine biosynthesis I
-	BVU_RS19515	threonine ammonia-lyase	-	-	-
IlvB	BVU_RS12865	acetolactate synthase large subunit	2	0	0
IlvN	BVU_RS12870	acetohydroxyacid synthase small subunit	9	13	14
IlvC	BVU_RS12880	ketol-acid reductoisomerase	22	24	26
-	BVU_RS12860	dihydroxy-acid dehydratase	6	6	5
-	BVU_RS01360	branched-chain amino acid aminotransferase	7	24	18
L-isoleucine biosynthesis IV
-	BVU_RS02915	propanoate:CoA ligase (AMP-forming)	-	-	-
-	BVU_RS00045	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS19410	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS15255	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS07510	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS04995	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS04960	Long-chain-fatty-acid--CoA ligase	-	-	-
IlvB	BVU_RS12865	acetolactate synthase large subunit	2	0	0
IlvN	BVU_RS12870	acetohydroxyacid synthase small subunit	9	13	14
IlvC	BVU_RS12880	ketol-acid reductoisomerase	22	24	26
-	BVU_RS12860	dihydroxy-acid dehydratase	6	6	5
-	BVU_RS01360	branched-chain amino acid aminotransferase	7	24	18
L-leucine biosynthesis
-	BVU_RS10160	2-isopropylmalate synthase	9	11	8
-	BVU_RS10175	2-isopropylmalate synthase	0	1	0
LeuC	BVU_RS10165	3-isopropylmalate dehydratase large subunit	7	10	6
LeuD	BVU_RS10170	3-isopropylmalate dehydratase small subunit	1	0	0
LeuB	BVU_RS10180	3-isopropylmalate dehydrogenase	3	3	2
-	BVU_RS01360	branched-chain amino acid aminotransferase	7	24	18
L-lysine biosynthesis III
-	BVU_RS10375	putative aspartokinase I-homoserine dehydrogenase	26	21	6
-	BVU_RS19340	aspartokinase	13	11	8
-	BVU_RS01045	aspartate-semialdehyde dehydrogenase	22	33	31
-	BVU_RS16620	putative dihydrodipicolinate synthase	1	4	3
DapB	-	-	-	-	-
-	BVU_RS08435	putative oxidoreductase	22	40	68
LysA	BVU_RS19345	diaminopimelate decarboxylase	2	3	1
-	BVU_RS20260	-	-	-	-
L-lysine biosynthesis VI

Name	Locus tag	function/EC No.	1/2ODmax	ODmax	ODstat
5-aminoimidazole ribonucleotide biosynthesis II
-	BVU_RS04370	-	-	-	-
-	BVU_RS19210	-	-	-	-
-	BVU_RS20040	-	-	-	-
-	BVU_RS05540	phosphoribosylamine--glycine ligase	3	3	3
-	BVU_RS13930	phosphoribosylglycinamide formyltransferase 2	1	6	5
-	BVU_RS00400	putative phosphoribosylformylglycinamidine synthase	17	10	1
-	BVU_RS00475	putative phosphoribosylformylglycinamidine cyclo-ligase	1	2	1
adenine and adenosine salvage I
-	BVU_RS08145	purine nucleoside phosphorylase I	0	4	7
-	BVU_RS06135	adenine phosphoribosyltransferase	1	1	2
adenine and adenosine salvage IV
-	BVU_RS04245	-	-	-	-
adenosine deoxyriboculeotide de novo synthesis
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
CMP phosphorylation
-	BVU_RS09815	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
guanine and guanosin salvage
-	BVU_RS08145	purine nucleoside phosphorylase I	0	4	7
Hpt	BVU_RS08545	putative hypoxanthine guanine phosphoribosyltransferase	0	3	5
Xpt	BVU_RS12750	xanthine phosphoribosyltransferase	1	0	0
guanosine deoxyriboculeotide de novo synthesis
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
pyrimidine deoxyribonucleosides salvage
-	BVU_RS09765	cytidine/deoxycytidylate deaminase	0	2	3
-	BVU_RS09305	-	-	-	-
-	BVU_RS09885	putative thymidylate synthase B	1	0	1
-	BVU_RS09305	-	-	-	-
-	-	2.7.1.74	-	-	-
pyrimidine deoxyribonucleostide phosphorylation
-	BVU_RS09815	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	-	2.7.4.9/12/13;	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
pyrimidine deoxyriboculeotide de novo synthesis
-	-	3.6.1.15;	-	-	-
	BVU_RS00015	putative ribonucleoside reductase	8	5.75	2
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	BVU_RS07130	deoxyuridine 5'-triphosphate nucleotidohydrolase	1	0	1
-	BVU_RS01730	-	-	-	-
-	BVU_RS12965	-	-	-	-
-	BVU_RS09885	putative thymidylate synthase B	1	0	1
-	-	2.7.4.9/12/13;	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
pyrimidine nucleobases salvage I
-	BVU_RS04955	-	-	-	-
-	BVU_RS04990	-	-	-	-
pyrimidine ribonucleosides salvage I
	BVU_RS16775	cytidine/deoxycytidylate deaminase	0	2	3
-	BVU_RS11865	uridine kinase	0	0	1
-	-	2.7.1.213;	-	-	-
UMP biosynthesis II
-	BVU_RS20030	carbamoyl phosphate synthetase	28.25	13.25	3.25
-	BVU_RS20035	glutamine-hydrolyzing carbamoyl phosphate synthetase III	2.25	5.25	4.25
-	BVU_RS20255	-	-	-	-
-	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase	84	29	5
PyrB	-	aspartate carbamoyltransferase catalytic chain	0	2	0
-	BVU_RS16780	aspartate carbamoyltransferase regulatory chain	1	2	3
-	BVU_RS11365	dihydroorotase	0	0	1
-	BVU_RS19405	putative dihydroorotate dehydrogenase	0	3	2
-	BVU_RS04365	orotate phosphoribosyltransferase	13	36	48
PyrF	BVU_RS00485	orotidine 5'-phosphate decarboxylase	0	0	1.5
UMP biosynthesis III
-	BVU_RS20030	carbamyl phosphate synthetase	28.25	13.25	3.25
-	BVU_RS20035	glutamine-hydrolyzing carbamoyl phosphate synthetase III	2.25	5.25	4.25
-	BVU_RS20255	-	-	-	-
-	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase	84	29	5
PyrB	BVU_RS16775	aspartate carbamoyltransferase catalytic chain	0	2	0
-	BVU_RS16780	aspartate carbamoyltransferase regulatory chain	1	2	3
-	BVU_RS11365	dihydroorotase	0	0	1
-	BVU_RS16640	-	-	-	-
-	BVU_RS04365	orotate phosphoribosyltransferase	13	36	48
PyrF	BVU_RS00485	orotidine 5'-phosphate decarboxylase	0	0	1.5
UTP and CTP de novo biosynthesis
-	BVU_RS09490	uridylate kinase	1	1	1
-	BVU_RS09815	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	BVU_RS16855	CTP synthase	9.5	8.25	3.25

Name	Locustag	function/EC No.	1/2ODmax	ODmax	ODstat
fatty acid biosynthesis initiation I
AccC	-	-	-	-	-
FabD	BVU_RS19990	malonyl CoA-acyl carrier protein transacylase	5	9	6
-	BVU_RS02315	3-oxoacyl-[acyl-carrier-protein] synthase III	12	6	2
fatty acid elongation -- saturation
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
FabG		-	-	-	-
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG	BVU_RS10065	enoyl-[acyl-carrier-protein] reductase	10	15	20
FabG	-	-	-	-	-
-	BVU_RS05130	-	-	-	-
palmitate biosynthesis II
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
FabG		-	-	-	-
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG	-	-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
-	BVU_RS00045	-	-	-	-
-	BVU_RS19410	-	-	-	-
-	BVU_RS15255	-	-	-	-
-	BVU_RS07510	-	-	-	-
lipid IVA biosynthesis
-	BVU_RS00505	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase	0	1.75	3.5
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
-	BVU_RS00495	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	1	2.25	0.75
-	BVU_RS15065	-	-	-	-
-	BVU_RS02680	-	-	-	-
LpxB	BVU_RS09710	-	-	-	-
LpxK	BVU_RS08150	-	-	-	-
palmitoleate biosynthesis I
-	BVU_RS05130	-	-	-	-
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG		-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
CDP-diacylglycerol biosynthesis I
-	BVU_RS02595	-	-	-	-
-	-	2.3.1.15;	-	-	-
-	BVU_RS11350	-	-	-	-
-	BVU_RS09720	-	-	-	-
phophatidylethanolamine biosynthesis I
-	BVU_RS09540	-	-	-	-
-	BVU_RS09545	phosphatidylserine decarboxylase	0.75	0	0
gondoate biosynthesis I (anaerobic)
-	BVU_RS05130	-	-	-	-
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG		-	-	-	-
stearate biosynthesis II
-	BVU_RS05130	-	-	-	-
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG	-	-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
-	BVU_RS00045	-	-	-	-
-	BVU_RS19410	-	-	-	-
-	BVU_RS15255	-	-	-	-
-	BVU_RS07510	-	-	-	-
peptidoglycan biosynthesis I
MurA	-	-	-	-	-
-	BVU_RS11270	-	-	-	-
-	BVU_RS07065	-	-	-	-
Murl	-	-	-	-	-
MurD	-	-	-	-	-
-	BVU_RS07090	-	-	-	-
-	BVU_RS02785	D-alanine--D-alanine ligase	0	0.75	0
-	BVU_RS08970	-	-	-	-
-	BVU_RS02365	-	-	-	-
MraY	-	2.7.8.13;	-	-	-
MurG	-	-	-	-	-

Name

average 1/2ODmax

average ODmax

average ODstat

F23-30

3,6-dimethyl-2,5-piperazinedione

8265378.743

1.099494342E7

1.384175322E7

(4-hydroxyphenyl)acetate

1420991.782

4245243.065

adenosine

1.914616041E8

2.049224602E8

4.368890932E7

AMP

2.542298812E7

alanine

3.048153434E8

1023598628

4.595991406E8

beta-Alanine

1.076268625E7

1.472702677E7

1.153525451E7

arabinose

7.267107188E7

5.558992709E7

asparagine

9194929.216

1.065020677E8

4.63419194E7

aspartate

1336480732

2.561961123E9

1979001674

N-acetyl-aspartate

1.430374177E7

1.358601966E7

1.834177997E7

4-hydroxybutanoate

4341238.489

1.611925834E7

3.671945556E7

citraconic acid

3044486.818

2.246157863E7

3.030884869E7

citrate

2.312309536E7

137330468

8.736149751E7

cytosine

2.809813669E7

8.62736557E7

3.474310703E7

erythritol

5054322.738

1.778982275E7

1.638248006E7

erythronic acid

2.272937928E7

3.634991079E7

2.688512397E7

erythrose

2.787263181E7

5.955155986E7

6765894.403

ethanolamine

4.969040726E7

1.530971721E8

3.033750008E8

ethanolaminephosphate

2.546777747E7

2.813185905E7

9443448.536

fructose

1.850946281E8

1.257242206E8

fructose-6-phosphate

2.849009979E8

1.242458087E8

fumarate

2.404458386E8

5.637002336E8

6.521516803E8

gluconic-acid

2.568004851E8

1.181679281E8

9550974.311

N-acetyl-glucosamine

9768310.857

7213146.982

glucose-6-phosphate

4.067897086E8

1.828808347E8

glutamate

1340216244

6.658121568E9

1169145644

glutamine

2.056023878E8

4.190071894E8

2.240359272E8

2-hydroxy-glutarate

3.294905939E7

3.590857646E7

glyceraldehyde

7750331.635

2.298763835E7

1.335637885E7

glycerate

3.755884754E8

2.740662649E8

1.147235845E8

2-phosphoglycerate

4572553.126

3-phosphoglycerate

2.302342533E7

3.439023367E7

5846386.359

glycerol

4.661167241E7

6.570150232E7

6.856078056E7

glycerol-3-phosphate

1.041908498E7

1.718752623E8

1.772606967E8

glycine

6.209431422E8

2057670347

4.592510717E8

glycolate

1.405411682E7

2.059001147E7

1.808473331E7

homoserine

3.335082045E8

3.591716395E8

1.399917335E7

N-2-oxocaproyl-homoserine lactone

1.517760032E7

1.867238667E7

2.293308736E7

N-2-oxooctanyol-DL-homoserine lactone

11635.331750000001

N-hexanoyl-homoserine lactone

3740822.157

homoserine-lactone

1.809613475E7

1.95027542E7

2.570292888E7

indole-3-acetaldehyde

4383476.133

9365954

8288216.327

indole-3-acetic acid

4.691573849E7

7820113.983

indole-3-lactate

2186880.9

2630974.483

2594399.649

myoinositol-2-phosphate

1.775189535E7

2.390872067E7

5423904.234

isoleucine

1.374542193E8

3.199794331E8

1.217658453E8

lactate

4.274263196E8

8.536903754E8

9.656382479E8

leucine

5.790712841E8

1439535415

5.516541295E8

maleamate

4192487.17

5795711.583

5199904.97

malate

3.923954001E8

848322731

8.097098594E8

2-isopropylmalic acid

2.890969401E7

2-methyl-malate

6.080885221E7

1.079938159E8

4.788533355E7

maltose

1.326685341E8

133750122

1800785.279

3,4-dihydroxy-mandelic acid

8064132.172

8749595.731

1.079897095E7

mannose

4.487437963E8

252336952

1.393508464E7

mannose-6-phosphate

9.636200797E7

5.955190153E7

methionine

2034513.532

7.628279346E7

2.730399671E8

Nicotinamide

1.258987794E8

501164642

3.260022908E8

nicotinic acid

1.170017169E8

2.097302329E8

4.873414118E8

phenylacetate

2956646.363

4456889.651

9633215.127

phenylalanine

4.388546669E8

4.935537981E8

1.789371058E8

phenylpyruvate

2956401.783

3496928.418

2585520.354

phosphoenolpyruvate

7904362.188

1.402691499E7

5128633.264

proline

2.666568981E8

1511423646

1605577602

2-amino-2-methyl-3-hydroxy-propanoate

3.371460358E7

putrescine

1.005640698E7

1.171328886E7

pyroglutamate

2.540546723E9

4.104969694E9

3.284833895E9

pyrophosphate

9.711275107E7

pyruvate

5.764449038E7

1.054069723E8

4.67062416E7

3-hydroxypyruvate

2.813426578E7

3.874564615E7

4.709903788E7

rhamnose

5467552.28

7287586.92

ribitol

1000000000

ribose

694367707

5.328332125E8

4.384904984E8

sedoheptulose-7-phosphate

5.917838268E7

7.411755046E7

3993024.476

serine

1276441786

3.335129505E9

7.695622812E8

cycloserine

5.084750116E7

2.600599198E8

8.100619203E7

N-acetyl-serine

1.059336746E8

1.842237611E8

3-dehydroshikimate

2915323.859

3497219.62

1688258.611

spermine

3541465.43

4704480.265

3252199.329

succinate

2.657480135E9

4.484433305E9

5.284361116E9

threonine

1749332247

3.39003851E9

8.915184433E7

threose

3516783.548

4772561.199

5178304.532

thymine

589083380

6.178797086E8

2.814467823E8

tryptophan

2539672.872

4857143.382

6075927.328

tyrosine

9.550352555E7

1.368401247E8

7.821043712E7

Unknown#1325.8-pin-mhe_007

2.746316097E7

3.831566682E7

3.146717502E7

Unknown#1366.59-ppu-cja_010

1.028040972E8

1.286606871E8

3.83307523E7

Unknown#1366.9-pin-mhe_011

5.100790519E7

Unknown#1392.1-pin-mhe_012

8.392893011E7

Uracil

1702329403

2117311135

1641307740

uridine

1.474320764E7

8750848.652

valine

9.230785067E8

2.592221665E9

3.434458049E8

xylitol

2.239443265E7

xylose

1.166395907E7

1.05930369E7

3438379.921

xylulose

7.952552253E7

7.546167784E7

xylulose-5-phosphate

855942.3938

1592458.039

CoA	1/2ODmax				ODmax				Odstat
CoenzymeA	4912868	4693358	4415376	4029986	7999299	5436994	5471682	7341028	3722929	3119229	3701465	3818397
Acetyl-CoA	58415094	60965398	63465947	60060491	45393976	31968886	35167580	45404304	44039022	39014335	41993660	38573573
Propenoyl-CoA	2135768	2095049	1494035	1733782	337249	305428	301575	250793	223376	182202	258149	281767
Propanoyl-CoA	5023647	5226892	4527377	4287440	1943418	2347079	1925851	2219608	7656282	5159891	6943862	6861228
Butanoyl-CoA	4776301	5393140	4026315	5894770	20097739	17224231	12407080	17225271	14975138	14403527	11433604	11987066
Isobutanoyl-CoA	4371966	4922817	4109338	4505565	15840788	14356691	11994533	13954118	8893864	8921627	6932793	9596689
(S)-2-Methylbutanoyl-CoA	9949737	10129657	8731578	8150428	15483160	15620341	18433654	20650339	44850423	36776164	32778771	48635322
Isovaleryl-CoA	4999600	4500310	3911202	3374602	25918635	19124343	20376423	23534793	55823717	35807178	53743495	46561363
Pentanoyl-CoA	824233	868427	721083	755892	1771268	1402055	1438430	1969274	5972812	6884757	6884792	7280826
Malonyl-CoA	177622	217814	177321	233897	732199	626023	648105	713322	871181	1022431	866700	887095
Methylmalonyl-CoA	5123649	4195843	3916541	3763798	2875768	1995122	2569047	1923211	9979938	7408454	9096165	10471671
Succinyl-CoA	21169812	17919356	22625778	14636368	19358027	22797158	14771345	17849154	31131938	26989307	33768034	33003571
Cyclohexa-1,5-dienecarbonyl-CoA	1227884	1306538	925570	1214402	2339858	2739259	2490548	2597333	7394661	5144411	8170709	7629941
Cyclohex-1-ene-1-carboxyl-CoA	221606	177166	155359	182230	1090067	856545	745147	857469	595135	746863	741959	566189
Methylsuccinyl-CoA	430019	486722	340381	425041	396548	429238	333357	396585	485835	408756	350739	325660
C28H42N7O18P3S, similar to beta-(2-Furyl)propionyl-CoA	1739194	1817161	1652515	1545113	1034390	1076613	1304001	1434617	605293	588617	823728	772815
C29H41N8O17P3S, exact mass based	1956558	1959717	1510641	1436500	11001764	9401792	8029753	10627222	9750493	8677756	9005034	11810337
Phenylglyoxylyl-CoA	81301	97570	84085	88380	883414	781849	817047	1053451	1346654	1350960	1368696	1943608
C29H43N8O17P3S, similar to N-Methylanthraniloyl-CoA	3621909	4315683	2862026	3731336	3989842	4396538	3225252	3857268	1260793	990580	1201589	1246272
2,3-Dihydro-2,3-dihydroxybenzoyl-CoA	610018	585519	641224	594254	1103750	1019841	903896	818590	473518	456067	498651	496308

100

Name	average 1/2ODmax	average ODmax	average ODstat
(4-hydroxyphenyl)acetate	0	0	9289.599772
1,6-anhydro-glucose	13241.09054	21598.00354	5276.194721
1-O-methyl-alpha-glucopyranoside	120221.2645	22595.36598	0
1-pyrroline-2-carboxylate	11399.37926	12334.10381	12984.44374
2,4-dihydroxybutanoate	23100.79123	17651.50354	17132.32856
2-amino-2-methylpropane-1,3-diol	17292.52606	304397.5939	119436.4133
2-aminobutanoate	13801.57337	64058.93625	18782.03809
2-aminoisobutanoate	1846.437294	2522.104867	981.3441083
2-hydroxy-4-(methylthio)butanoate	1062.234506	4951.057944	21931.4075
2-hydroxybutanoate	0	21893.13429	20704.05855
2-hydroxy-glutarate	9126.16993	93357.42608	124743.2806
2-hydroxyisocaproate	0	6154.527856	7563.933773
2-isopropylmalic acid	9318.271904	32305.2513	26006.79167
2-methyl-malate	47322.16999	147337.0056	148228.6592
2-oxobutanoate	1706.542423	5182.400179	1972.253655
2-oxoglutarate	3825.152833	16351.44434	8373.118877
3,4-dihydroxybenzoate	2154.914701	2729.888575	1818.869325
3-aminoisobutanoate	51072.72964	53180.989	52068.8065
3-dehydroshikimate	0	4274.800011	2519.69768
3-hydroxybenzoate	1118.434005	1577.661383	1487.247318
3-hydroxyindole	145483.7357	145062.1962	161133.4753
3-hydroxyisobutanoate	1443.406185	2030.471884	4677.262604
3-hydroxyisovaleric acid	0	0	13350.90751
4-hydroxybenzoate	4347.213233	9265.616971	6439.181642
4-hydroxybutanoate	8341.833798	57319.67342	130046.4036
4-hydroxyphenylacetonitrile	1702.447467	1965.253942	2211.86605
4-oxobutanoate	0	2897.024902	2276.482706
4-oxopentanoic acid	12512.22651	14994.85326	15058.76188
6-deoxy-mannose	115413.7129	40962.12844	1007.050309
alanine	186437.366	675858.5938	377179.5159
aminomalonic acid	0	32029.00758	30254.65806
arabinonate	2480.46599	2885.912754	826.9863153
arabinono-1,4-lactone	6041.827278	8305.663046	0
arabinose	113599.8842	18742.39801	0
asparagine	0	3974.843049	0
aspartate	0	22641.73173	0
benzene-1,2,4-triol	2685.662953	6543.742449	9444.725211
benzoate	164377.0865	214497.77	234102.4865
beta-Alanine	111004.0078	17010.72479	25348.08442
butylamine	2583.330356	7800.087292	3031.189135
citraconic acid	13291.46357	20733.4688	14481.70315
citrate	19032.68054	31779.28151	26073.8232
cysteine	0	8649.927068	7935.665552
diethylene glycol	114075.8286	126325.7524	147065.7096
erythritol	6432.784773	20202.39974	35682.00093
erythronic acid	17425.01564	52475.53757	36736.3588
erythronic acid-1,4-lactone	5212.858485	16058.7725	12997.351
erythrose	21921.41473	78241.62423	44883.12959
ethanolamine	30960.5817	139357.8415	274287.2696
fructose	518667.171	284286.21	3647.387377
fumarate	74158.3667	89377.55297	77311.96085
galactose	287798.7167	136190.6944	0
gluconic-acid	53450.97373	24254.20329	5112.018837
glucose	1401777.391	680722.0745	148902.9758
glutamine	96326.14762	126582.3145	142426.8809
glyceraldehyde	9937.889679	26075.91615	15092.50598
glycerate	38642.76494	138259.5499	57055.02788
glycerol-3-phosphate	0	2377.851981	1843.756899
glycine	25679.78888	117986.9177	76740.94961
glycolate	7575.441393	14218.2835	10748.57535
hydrocinnamic acid	18962.46781	28176.20618	28493.75941
hydroquinone	5964.373506	1497.075992	1384.895708
hydroxylamine	42642.97452	54994.37608	55226.30733
indole-3-lactate	0	510.5191295	568.7783619
isocaproate	0	5383.709628	3284.426331
isoleucine	16528.71098	38714.57974	18782.29433
isomaltose*	285.1419036	630.276348	0
lactate	782860.4662	994265.4398	1215024.733
laminaribiose*	3458.983938	8499.335859	606.5945435
leucine	0	54179.53124	24567.30548
malate	415601.0876	965945.4366	945762.7512
maleate	7494.438311	42037.55822	21269.74702
malonamide	313710.7895	438380.1751	386739.6702
malonic acid	0	1656.04694	1719.925459
mannonic acid-1,4-lactone	0	492.9970468	0
mannose	159580.4492	47561.44195	0
mannosylglycerate	8411.381146	0	0
methyl 3,6-anhydro-alpha-galactopyranoside	3513.663272	4304.23687	3661.989529
myo-inositol	0	850.0713329	0
N-acetyl-galactosamine	3671.443836	629.3391122	0
N-acetyl-glucosamine	4287.622265	1006.047384	0
N-acetyl-phenylalanine	0	0	972.2001417
nicotinic acid	21321.99894	26841.36041	121129.9429
oxalate	9393.353043	11625.98082	10514.72433
phenylpyruvate	2495.374715	4905.818014	4074.834533
proline	54337.72263	963555.2114	789359.9671
propane-1,2-diol	12926.23761	15962.30631	31277.14495
propane-1,3-diol	105286.998	53200.53431	0
putrescine	8087.277356	0	0
pyridoxal	0	1363.784526	519.1638029
pyroglutamate	51637.52579	282849.0538	157454.2446
pyrrole-2-carboxylate	6045.629836	12082.07825	8520.154384
pyruvate	126135.6008	41206.06283	13904.45386
quinate	1138.771335	1889.73512	1362.196213
ribonate	3637.443671	6401.706855	4352.95201
ribose	35320.99403	54534.9951	38510.98767
shikimic acid	0	130438.5169	74191.88895
sorbitol	7360.274366	0	0
succinate	2298.598083	2452304.88	2784346.948