Additional Data related to the catabolsim of P. vulgatus

Selected Cell

Cell:

Value:

Outline 1P_vulgatus_ATCC_8482 2Proteomic_data 3Amino_acids 4Nucleotide 5Fatty_acdis_cell_wall 6Metabolites 7Metabolome_CoA 8Exo_Metabolome



Tab	Name	Contents
1	1P_vulgatus_ATCC_8482	Genome of P. vulgatus ATCC 8482
2	2Proteomics_data	Identified proteins with peptide counts
3	3Amino_acids	BioCyc-predicted biosynthesis of amino acids including identified proteins
4	4Nucleotide	BioCyc-predicted biosynthesis of nucleotides including identified proteins
5	5Fatty_acdis_cell_wall	BioCyc-predicted biosynthesis of fatty acids and cell wall including identified proteins
6	6Metabolites	Metabolites of the intracellular metabolome
7	7Metabolome_CoA	CoAs of the metabolome
8	8Exo_Metabolome	Metabolites of the extracellular metabolome

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BVU_RS22525		<2244870	>2245031			BVU_RS22525		histidine kinase
BVU_RS08885	BVU_1748	2245014	2245256	80		BVU_RS08885		ATP-binding protein
BVU_RS08890	BVU_1749	2245258	2246484	408	c	BVU_RS08890		glycoside hydrolase family 88 protein
BVU_RS08895	BVU_1750	2246660	2248081	473	c	BVU_RS08895		NADH-quinone oxidoreductase subunit N
BVU_RS08900	BVU_1751	2248112	2249593	493	c	BVU_RS08900		NADH-quinone oxidoreductase subunit M
BVU_RS08905	BVU_1752	2249647	2251548	633	c	nuoL	7.1.1.2	NADH-quinone oxidoreductase subunit L
BVU_RS08910	BVU_1753	2251551	2251859	102	c	nuoK	1.6.5.11	NADH-quinone oxidoreductase subunit NuoK
BVU_RS08915	BVU_1754	2251865	2252368	167	c	BVU_RS08915		NADH-quinone oxidoreductase subunit J
BVU_RS08920	BVU_1755	2252384	2252836	150	c	BVU_RS08920		NADH-quinone oxidoreductase subunit I
BVU_RS08925	BVU_1756	2252836	2253912	358	c	nuoH	1.6.5.11	NADH-quinone oxidoreductase subunit NuoH
BVU_RS08930	BVU_1757	2254036	2255595	519	c	BVU_RS08930	7.1.1.-	NADH-quinone oxidoreductase subunit D
BVU_RS08935	BVU_1758	2255592	2256188	198	c	BVU_RS08935	1.6.5.11	NADH-quinone oxidoreductase subunit B
BVU_RS08940	BVU_1759	2256179	2256529	116	c	BVU_RS08940		NADH-quinone oxidoreductase subunit A
BVU_RS08945	BVU_1760	2256633	2257010	125	c	BVU_RS08945		hypothetical protein
BVU_RS08950	BVU_1761	2257113	2258567	484	c	BVU_RS08950		TrkH family potassium uptake protein
BVU_RS08955	BVU_1762	2258567	2259907	446	c	trkA		Trk system potassium transporter TrkA
BVU_RS08960	BVU_1763	2259920	2261818	632	c	dxs	2.2.1.7	1-deoxy-D-xylulose-5-phosphate synthase
BVU_RS08965	BVU_1764	2261911	2262897	328		BVU_RS08965		GSCFA domain-containing protein
BVU_RS08970	BVU_1765	2262873	2265338	821		BVU_RS08970		bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase
BVU_RS08975	BVU_1766	2265428	2265991	187		BVU_RS08975		DUF4858 domain-containing protein
BVU_RS08980	BVU_1767	2266143	2267447	434	c	BVU_RS08980		glycosyl hydrolase family 28 protein
BVU_RS08985	BVU_1768	2267489	2270401	970	c	BVU_RS08985		DUF4981 domain-containing protein
BVU_RS08990	BVU_1769	2270654	2272438	594	c	BVU_RS08990		glycoside hydrolase family 28 protein
BVU_RS08995	BVU_1770	2272651	2273346	231		BVU_RS08995		SGNH/GDSL hydrolase family protein
BVU_RS09000	BVU_1771	2273550	2274983	477	c	BVU_RS09000		sulfatase
BVU_RS09005	BVU_1772	2274988	2276790	600	c	BVU_RS09005		RagB/SusD family nutrient uptake outer membrane protein
BVU_RS09010	BVU_1773	2276805	2280191	1128	c	BVU_RS09010		TonB-dependent receptor
BVU_RS09015	BVU_1774	2280445	2281458	337	c	BVU_RS09015		FecR family protein
BVU_RS09020	BVU_1775	2281603	2282169	188		BVU_RS09020		RNA polymerase sigma-70 factor
BVU_RS09025	BVU_1776	2282362	2283042	226	c	BVU_RS09025		HU family DNA-binding protein
BVU_RS09030	BVU_1777	2283371	2284768	465		BVU_RS09030		DUF3874 domain-containing protein
BVU_RS21510		2284893	2285161	88.66666666666667		BVU_RS21510		DUF1573 domain-containing protein
BVU_RS09035	BVU_1779	2285256	2285843	195		BVU_RS09035		RNA polymerase sigma-70 factor
BVU_RS09040	BVU_1780	2285962	2286906	314		BVU_RS09040		FecR domain-containing protein
BVU_RS09045	BVU_1781	2287062	2290610	MMIEVKNLSFSYGKRKQKVFDDFSLALDKGSVYGLLGKNGTGKSTLLYLMTGLLRPQAGRVLYKGVDVSM		BVU_RS09045		SusC/RagA family TonB-linked outer membrane protein
BVU_RS09050	BVU_1782	2290622	2292562	RYPLTLQDMFLVPEEFALPSVSLKQYLKLNTPFYPNFSNELLSTCLRDFDMNEDIHLGELSMGQKKKAFM		BVU_RS09050		RagB/SusD family nutrient uptake outer membrane protein
BVU_RS09055	BVU_1783	2292656	2293777	CFALATNTSLLVMDEPSNGLDIPSKSQFRKVIASGMTDEKSVIISTHQVRDIDSLLDHVVIIDGTRVLLN		BVU_RS09055		glycoside hydrolase family 88 protein
BVU_RS09060	BVU_1784	2293791	2295053	ASVKTICDKVYFAEQGMNEPTDTALYVQPSVQGNSVIFPNTENEETNLNLEVLFNAMLAEREKMQTMFNK		BVU_RS09060		DUF2264 domain-containing protein
BVU_RS09065	BVU_1785	2295065	2297635	856		BVU_RS09065		glycoside hydrolase family 2 protein
BVU_RS09070	BVU_1787	2297944	2300158	737.3333333333334		BVU_RS09070		glycoside hydrolase
BVU_RS09075	BVU_1788	2300310	2303096	928		BVU_RS09075		helix-turn-helix domain-containing protein
BVU_RS09080	BVU_1789	2303312	2304748	478		aldA	1.2.1.-	aldehyde dehydrogenase
BVU_RS09085	BVU_1790	2304934	2305938	334		BVU_RS09085		glycoside hydrolase family 43 protein
BVU_RS09090	BVU_1791	2306008	2307471	487		BVU_RS09090		glycoside hydrolase family 140 protein
BVU_RS09095	BVU_1792	2307568	2308308	246		BVU_RS09095		hypothetical protein
BVU_RS09100	BVU_1793	2308330	2311656	1108		BVU_RS09100		AAA domain-containing protein
BVU_RS09105	BVU_1794	2311710	2313185	491	c	BVU_RS09105		MFS transporter
BVU_RS09110	BVU_1795	2313405	2314361	318	c	kduI	5.3.1.17	5-dehydro-4-deoxy-D-glucuronate isomerase
BVU_RS09115	BVU_1796	2314380	2315771	463	c	BVU_RS09115		PTS sugar transporter subunit IIC
BVU_RS09120	BVU_1797	2316061	2317290	409		BVU_RS09120		glycoside hydrolase family 88 protein
BVU_RS09125	BVU_1798	2317305	2318255	316		BVU_RS09125		pectinesterase family protein
BVU_RS09130	BVU_1799	2318473	2321745	1090		BVU_RS09130		TonB-dependent receptor
BVU_RS09135	BVU_1800	2321778	2323943	721		BVU_RS09135		RagB/SusD family nutrient uptake outer membrane protein
BVU_RS09140	BVU_1801	2324323	2326311	662		BVU_RS09140		SUMF1/EgtB/PvdO family nonheme iron enzyme
BVU_RS09145	BVU_1802	2326855	2329401	848		BVU_RS09145		hypothetical protein
BVU_RS09150	BVU_1803	2329464	2330984	506		BVU_RS09150		pectinesterase family protein
BVU_RS09155	BVU_1804	2331049	2331612	187		BVU_RS09155		RNA polymerase sigma-70 factor
BVU_RS09160	BVU_1805	2331683	2332615	310		BVU_RS09160		FecR family protein
BVU_RS09165	BVU_1806	2332671	2335970	1099		BVU_RS09165		TonB-dependent receptor
BVU_RS09170	BVU_1807	2335989	2337677	562		BVU_RS09170		RagB/SusD family nutrient uptake outer membrane protein
BVU_RS09175	BVU_1808	2337763	2340792	1009		BVU_RS09175		beta-glycosidase
BVU_RS09180	BVU_1809	2340795	2344163	1122		BVU_RS09180		PA14 domain-containing protein
BVU_RS09185	BVU_1810	2344177	2346561	794		BVU_RS09185		DUF4968 domain-containing protein
BVU_RS09190	BVU_1811	2346579	2348579	666		BVU_RS09190		acetylxylan esterase
BVU_RS09195	BVU_1812	2348673	2349164	163	c	BVU_RS09195		cupin domain-containing protein
BVU_RS09200	BVU_1813	2349353	2350966	537		BVU_RS09200		pectate lyase
BVU_RS09205	BVU_1814	2350987	2352147	386		BVU_RS09205		dienelactone hydrolase family protein
BVU_RS09210	BVU_1815	2352154	2353878	574		BVU_RS09210		pectinesterase family protein
BVU_RS09215	BVU_1816	2354073	2358473	1466		BVU_RS09215		response regulator
BVU_RS09220	BVU_1817	2358669	2359403	244		BVU_RS09220		PorT family protein
BVU_RS09225	BVU_1818	2359513	2361954	813		BVU_RS09225		alpha/beta fold hydrolase
BVU_RS09230	BVU_1819	2362040	2363122	360	c	BVU_RS09230		phosphotransferase
BVU_RS09235	BVU_1820	2363230	2365482	750	c	BVU_RS09235		inorganic phosphate transporter
BVU_RS09240	BVU_1821	2365763	2367286	507		purH	2.1.2.3	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
BVU_RS09245	BVU_1822	2367399	2368421	340		BVU_RS09245		rod shape-determining protein
BVU_RS09250	BVU_1823	2368527	2369375	282		mreC		rod shape-determining protein MreC
BVU_RS09255	BVU_1824	2369384	2369884	166		mreD		rod shape-determining protein MreD
BVU_RS09260	BVU_1825	2369884	2371734	616		mrdA	3.4.16.4	penicillin-binding protein 2
BVU_RS09265	BVU_1826	2371715	2373169	484		rodA		rod shape-determining protein RodA
BVU_RS09270	BVU_1827	2373173	2373670	165	c	BVU_RS09270		gliding motility lipoprotein GldH
BVU_RS09275	BVU_1828	2373633	2375147	504	c	BVU_RS09275		hypothetical protein
BVU_RS09280	BVU_1829	2375237	2376361	374	c	BVU_RS09280		DNA polymerase III subunit delta
BVU_RS09285	BVU_1830	2376389	2377342	317	c	metF	1.5.1.20	methylenetetrahydrofolate reductase [NAD(P)H]
BVU_RS09290	BVU_1831	2377698	2378993	431	c	cls		cardiolipin synthase
BVU_RS21525		2379355	2379456	33		BVU_RS21525		left-handed beta-roll domain-containing protein
BVU_RS09300	BVU_1835	2380262	2381398	378	c	BVU_RS09300		AI-2E family transporter
BVU_RS09305	BVU_1836	2381409	2382008	199	c	BVU_RS09305	2.7.1.21	thymidine kinase
BVU_RS09310	BVU_1837	2382213	2382887	224		rsmI	2.1.1.198	16S rRNA (cytidine(1402)-2'-O)-methyltransferase
BVU_RS09315	BVU_1838	2382916	2383764	282		BVU_RS09315		hypothetical protein
BVU_RS09320	BVU_1839	2383840	2384529	229		BVU_RS09320		YjjG family noncanonical pyrimidine nucleotidase
BVU_RS09325	BVU_1840	2384680	2386155	491	c	BVU_RS09325		RagB/SusD family nutrient uptake outer membrane protein
BVU_RS09330	BVU_1841	2386184	2389192	1002	c	BVU_RS09330		TonB-dependent receptor
BVU_RS09335	BVU_1842	2389560	2390720	386		BVU_RS09335		site-specific integrase
BVU_RS09340	BVU_1843	2391311	2394271	986		BVU_RS09340		TonB-dependent receptor
BVU_RS09345	BVU_1844	2394296	2395837	513		BVU_RS09345		RagB/SusD family nutrient uptake outer membrane protein
BVU_RS09350	BVU_1845	2395862	2396650	262		BVU_RS09350		hypothetical protein
BVU_RS09360	BVU_1847	2397671	2400601	976		BVU_RS09360		TonB-dependent receptor
BVU_RS09365	BVU_1848	2400602	2402143	513		BVU_RS09365		RagB/SusD family nutrient uptake outer membrane protein
BVU_RS09370	BVU_1849	2402288	2403943	551		BVU_RS09370		IS1182 family transposase
BVU_RS09375	BVU_1850	2404399	2407332	977		BVU_RS09375		TonB-dependent receptor

100

				Average [peptide count]
Accession No.	Locustag old	Locustag	Genome predicted funtion	1/2ODmax	ODmax	ODstat
ABR37733.1	BVU_0003	BVU_RS00015	putative ribonucleoside reductase [Phocaeicola vulgatus ATCC 8482]	8	5.75	2
ABR37734.1	BVU_0004	BVU_RS00020	putative exported protein [Phocaeicola vulgatus ATCC 8482]	2	0	0
ABR37741.1	BVU_0011	BVU_RS00060	putative 50S ribosomal protein L9 [Phocaeicola vulgatus ATCC 8482]	14	13.75	13
ABR37742.1	BVU_0012	BVU_RS00065	30S ribosomal protein S18 [Phocaeicola vulgatus ATCC 8482]	71	56.25	69
ABR37743.1	BVU_0013	BVU_RS00070	30S ribosomal protein S6 [Phocaeicola vulgatus ATCC 8482]	10.5	16.25	16.75
ABR37745.1	BVU_0015	BVU_RS00085	two-component system response regulator [Phocaeicola vulgatus ATCC 8482]	24.75	59.75	69.75
ABR37746.1	BVU_0016	BVU_RS00090	two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482]	5.25	1.25	2.25
ABR37747.1	BVU_0017	BVU_RS00095	putative elongation factor G [Phocaeicola vulgatus ATCC 8482]	0	36	17.75
ABR37776.1	BVU_0046	BVU_RS00240	phosphoglucomutase/phosphomannomutase [Phocaeicola vulgatus ATCC 8482]	1.75	5.5	5.25
ABR37803.1	BVU_0073	BVU_RS00375	DnaJ domain protein [Phocaeicola vulgatus ATCC 8482]	0	1	1
ABR37808.1	BVU_0078	BVU_RS00400	putative phosphoribosylformylglycinamidine synthase [Phocaeicola vulgatus ATCC 8482]	16.5	9.75	1
ABR37812.1	BVU_0082	BVU_RS00420	putative secreted protein [Phocaeicola vulgatus ATCC 8482]	2.75	1.25	0
ABR37814.1	BVU_0084	BVU_RS00430	putative endonuclease/exonuclease/phosphatase family protein [Phocaeicola vulgatus ATCC 8482]	0.75	0	3
ABR37815.1	BVU_0085	BVU_RS00435	glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482]	4.75	6.5	8.5
ABR37816.1	BVU_0086	BVU_RS00440	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	14.75	18	9.75
ABR37822.1	BVU_0092	BVU_RS00475	putative phosphoribosylformylglycinamidine cyclo-ligase [Phocaeicola vulgatus ATCC 8482]	0.75	1.75	0.5
ABR37825.1	BVU_0095	BVU_RS00485	orotidine 5'-phosphate decarboxylase [Phocaeicola vulgatus ATCC 8482]	0	0	1.5
ABR37827.1	BVU_0097	BVU_RS00495	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Phocaeicola vulgatus ATCC 8482]	1	2.25	0.75
ABR37828.1	BVU_0098	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Phocaeicola vulgatus ATCC 8482]	32.75	15.25	8.25
ABR37829.1	BVU_0099	BVU_RS00505	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482]	0	1.75	3.5
ABR37853.1	BVU_0123	BVU_RS00625	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	3.25	4.75
ABR37871.1	BVU_0143	BVU_RS00725	GTP cyclohydrolase II [Phocaeicola vulgatus ATCC 8482]	3.25	3	3.5
ABR37872.1	BVU_0144	BVU_RS00730	aspartate aminotransferase [Phocaeicola vulgatus ATCC 8482]	20.5	20.5	20.25
ABR37874.1	BVU_0146	BVU_RS00745	5'-nucleotidase precursor [Phocaeicola vulgatus ATCC 8482]	1	0.5	0
ABR37875.1	BVU_0147	BVU_RS00750	putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase [Phocaeicola vulgatus ATCC 8482]	3	2	1.5
ABR37876.1	BVU_0148	BVU_RS00755	50S ribosomal protein L19 [Phocaeicola vulgatus ATCC 8482]	16.5	24	29
ABR37885.1	BVU_0157	BVU_RS00815	conserved protein, with a weak D-galactarate dehydratase/altronate hydrolase domain [Phocaeicola vulgatus ATCC 8482]	0	1	0
ABR37897.1	BVU_0169	BVU_RS00870	putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482]	7	0	6.25
ABR37919.1	BVU_0191	BVU_RS00975	ROK family transcriptional repressor, with glucokinase domain [Phocaeicola vulgatus ATCC 8482]	8.25	12.5	15.75
ABR37923.1	BVU_0195	BVU_RS00995	membrane fusion efflux protein [Phocaeicola vulgatus ATCC 8482]	14.5	10	12.25
ABR37924.1	BVU_0196	BVU_RS01000	putative outer membrane efflux protein [Phocaeicola vulgatus ATCC 8482]	1.75	2.5	2
ABR37926.1	BVU_0198	BVU_RS01010	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	1.75	4.25
ABR37928.1	BVU_0200	BVU_RS01020	putative alcohol dehydrogenase [Phocaeicola vulgatus ATCC 8482]	0	0	1
ABR37929.1	BVU_0201	BVU_RS01025	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	4.5	4.5
ABR37933.1	BVU_0205	BVU_RS01045	aspartate-semialdehyde dehydrogenase [Phocaeicola vulgatus ATCC 8482]	22.25	32.75	31.25
ABR37934.1	BVU_0206	BVU_RS01050	putative FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [Phocaeicola vulgatus ATCC 8482]	8.25	5	5.5
ABR37935.1	BVU_0207	BVU_RS01055	glycyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482]	4	5.75	2
ABR37960.1	BVU_0238	BVU_RS01205	putative membrane fusion protein transporter [Phocaeicola vulgatus ATCC 8482]	10.75	7.25	6.75
ABR37963.1	BVU_0241	BVU_RS01220	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482]	2	2.75	1.5
ABR37964.1	BVU_0242	BVU_RS01225	outer membrane protein oprM precursor [Phocaeicola vulgatus ATCC 8482]	35.25	11.5	8
ABR37965.1	BVU_0243	BVU_RS01230	AcrB/AcrD family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482]	7	1	1.75
ABR37966.1	BVU_0244	BVU_RS01235	AcrA/AcrE family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482]	50	24	20
ABR37967.1	BVU_0245	BVU_RS01240	NADP-dependent malate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	17.5	23.25	11.75
ABR37968.1	BVU_0246	BVU_RS01250	NADP-specific glutamate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	76.5	66.25	43
ABR37969.1	BVU_0247	BVU_RS01255	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	23.25	16.5	9.75
ABR37970.1	BVU_0248	BVU_RS01260	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	23.25	13	15.25
ABR37971.1	BVU_0249	BVU_RS01265	hypothetical protein BVU_0249 [Phocaeicola vulgatus ATCC 8482]	58.5	38.25	62.75
ABR37973.1	BVU_0251	BVU_RS01275	NAD-specific glutamate dehydrogenase 1 [Phocaeicola vulgatus ATCC 8482]	0	10.25	11.75
ABR37974.1	BVU_0252	BVU_RS01280	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	1	1	0
ABR37978.1	BVU_0256	BVU_RS01300	malate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	56.5	72	86
ABR37979.1	BVU_0257	BVU_RS01305	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	22	10.75	15.25
ABR37983.1	BVU_0263	BVU_RS01330	lipoprotein [Phocaeicola vulgatus ATCC 8482]	64	61.5	65.25
ABR37986.1	BVU_0266	BVU_RS01345	Mrp/Nbp35 family ATP-binding protein [Phocaeicola vulgatus ATCC 8482]	3.75	4.75	7.75
ABR37988.1	BVU_0268	BVU_RS01355	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	8.75	2.25	6
ABR37989.1	BVU_0269	BVU_RS01360	branched-chain amino acid aminotransferase [Phocaeicola vulgatus ATCC 8482]	6.75	23.75	17.5
ABR38002.1	BVU_0282	BVU_RS01425	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	1	1.25	1.75
ABR38018.1	BVU_0298	BVU_RS01520	dTDP-glucose 4,6-dehydratase [Phocaeicola vulgatus ATCC 8482]	2	6.5	6.5
ABR38029.1	BVU_0309	BVU_RS01575	putative methylmalonyl-CoA mutase small subunit [Phocaeicola vulgatus ATCC 8482]	11.5	7.75	5
ABR38030.1	BVU_0310	BVU_RS01580	methylmalonyl-CoA mutase large subunit [Phocaeicola vulgatus ATCC 8482]	16.25	19	6.5
ABR38035.1	BVU_0315	BVU_RS01605	putative two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482]	1.5	1.75	1
ABR38036.1	BVU_0316	BVU_RS01610	putative membrane transport protein [Phocaeicola vulgatus ATCC 8482]	2.5	0	0.75
ABR38037.1	BVU_0317	BVU_RS01615	putative cation efflux pump [Phocaeicola vulgatus ATCC 8482]	0	0.75	0
ABR38038.1	BVU_0318	BVU_RS01620	putative cation efflux pump [Phocaeicola vulgatus ATCC 8482]	1.5	5.25	3.5
ABR38039.1	BVU_0319	BVU_RS01625	outer membrane efflux protein oprM precursor [Phocaeicola vulgatus ATCC 8482]	2	3.25	8.5
ABR38040.1	BVU_0320	BVU_RS01630	hypothetical protein BVU_0320 [Phocaeicola vulgatus ATCC 8482]	0	2.75	3.25
ABR38045.1	BVU_0325	BVU_RS01655	electron transfer flavoprotein beta-subunit [Phocaeicola vulgatus ATCC 8482]	7	15.75	14.5
ABR38046.1	BVU_0326	BVU_RS01660	electron transfer flavoprotein alpha-subunit [Phocaeicola vulgatus ATCC 8482]	1.25	1.75	0
ABR38048.1	BVU_0328	BVU_RS01670	acyl-CoA dehydrogenase [Phocaeicola vulgatus ATCC 8482]	8.25	7	3.5
ABR38049.1	BVU_0329	BVU_RS01675	putative histidine decarboxylase [Phocaeicola vulgatus ATCC 8482]	0	4.75	6
ABR38050.1	BVU_0330	BVU_RS01680	putative phenylacetic acid degradation protein [Phocaeicola vulgatus ATCC 8482]	0	0	0.75
ABR38051.1	BVU_0331	BVU_RS01685	putative DNA mismatch repair protein [Phocaeicola vulgatus ATCC 8482]	0	1	1.25
ABR38060.1	BVU_0340	BVU_RS01735	putative oxidoreductase [Phocaeicola vulgatus ATCC 8482]	8.5	8.25	6
ABR38064.1	BVU_0345	BVU_RS01760	60 kDa chaperonin [Phocaeicola vulgatus ATCC 8482]	46.25	82.75	73
ABR38065.1	BVU_0346	BVU_RS01765	10 kDa chaperonin [Phocaeicola vulgatus ATCC 8482]	21.75	31.5	36.75
ABR38070.1	BVU_0351	BVU_RS01790	histidyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482]	5.75	7	7
ABR38080.1	BVU_0361	BVU_RS01845	3,4-dihydroxy-2-butanone 4-phosphate synthase [Phocaeicola vulgatus ATCC 8482]	3.5	2.5	2.25
ABR38092.1	BVU_0373	BVU_RS01905	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	9	14	15.75
ABR38093.1	BVU_0374	BVU_RS01910	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	3.25	2	4
ABR38094.1	BVU_0375	BVU_RS01915	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	2.25	1.25	2
ABR38096.1	BVU_0377	BVU_RS01920	peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Phocaeicola vulgatus ATCC 8482]	0	2	0
ABR38099.1	BVU_0380	BVU_RS01935	two-component system sensor histidine kinase, with response regulator receiver domain [Phocaeicola vulgatus ATCC 8482]	2.75	0	0
ABR38103.1	BVU_0384	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase [Phocaeicola vulgatus ATCC 8482]	20	23.75	27.75
ABR38113.1	BVU_0395	BVU_RS02010	hypothetical protein BVU_0395 [Phocaeicola vulgatus ATCC 8482]	10	4.5	5.5
ABR38120.1	BVU_0402	BVU_RS02055	putative cysteine synthase [Phocaeicola vulgatus ATCC 8482]	0	1.5	2.75
ABR38123.1	BVU_0408	BVU_RS02085	tryptophanyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482]	3.25	2.25	0
ABR38124.1	BVU_0409	BVU_RS02090	hypothetical protein BVU_0409 [Phocaeicola vulgatus ATCC 8482]	19	7.5	8.5
ABR38125.1	BVU_0410	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase [Phocaeicola vulgatus ATCC 8482]	83.75	29	4.75
ABR38127.1	BVU_0412	BVU_RS02105	putative protein disulfide isomerase [Phocaeicola vulgatus ATCC 8482]	0	0	0.75
ABR38129.1	BVU_0414	BVU_RS02115	major outer membrane protein OmpA [Phocaeicola vulgatus ATCC 8482]	417.25	912.25	1338.25
ABR38135.1	BVU_0420	BVU_RS02145	CysQ, sulfite synthesis pathway protein [Phocaeicola vulgatus ATCC 8482]	0	0.75	0
ABR38136.1	BVU_0421	BVU_RS02150	conserved hypothetical exported protein [Phocaeicola vulgatus ATCC 8482]	2.5	1.5	1.25
ABR38137.1	BVU_0422	BVU_RS02155	DNA mismatch repair protein mutL [Phocaeicola vulgatus ATCC 8482]	0	3	4.5
ABR38138.1	BVU_0423	BVU_RS02160	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	0	0	3
ABR38140.1	BVU_0425	BVU_RS02170	peptidyl-prolyl cis-trans isomerase [Phocaeicola vulgatus ATCC 8482]	7.75	9	6.75
ABR38141.1	BVU_0426	BVU_RS02175	conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482]	5	0.75	0
ABR38143.1	BVU_0428	BVU_RS02185	inosine-5'-monophosphate dehydrogenase [Phocaeicola vulgatus ATCC 8482]	25	28.75	28.75
ABR38157.1	BVU_0442	BVU_RS02265	ATP-dependent DNA helicase recQ [Phocaeicola vulgatus ATCC 8482]	9	12	4.25
ABR38158.1	BVU_0443	BVU_RS02270	ATP-dependent Clp protease ATP-binding subunit [Phocaeicola vulgatus ATCC 8482]	3.5	4.5	3.5

100

Name	Locus tag	Function/EC No.	1/2ODmax	ODmax	ODstat
glycine biosynthesis I
GlyA	BVU_RS16795	serine hydroxymethyltransferase	7	18	18
glycine biosynthesis II
GcvP	BVU_RS15125	glycine dehydrogenase	0	2	0
L-alanine biosynthesis I
-	BVU_RS06885	cysteine desulfurase	0	0	1
L-arginine biosynthesis (via L-ornithine)
ArgB	-	-	-	-	-
ArgB	BVU_RS06775	putative acetylglutamate kinase	0	0	1
-	BVU_RS03000	N-acetyl-gamma-glutamyl-phosphate reductase	3	2	2
-	BVU_RS02995	acetylornithine aminotransferase	3	4	5
-	BVU_RS07505	-	-	-	-
-	BVU_RS20030	carbamyl phosphate synthetase	28	13	3
-	BVU_RS20035	glutamine-hydrolyzing carbamoyl phosphate synthetase III	2	5	4
-	BVU_RS20255	-	-	-	-
-	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase	84	29	5
-	BVU_RS02805	ornithine carbamoyltransferase	3	3	4
-	BVU_RS03005	argininosuccinate synthase	6	9	7
ArgH	-	-	-	-	-
L-asparagine biosynthesis I
AsnB	-	asparagine synthase B	-	-	-
L-asparagine biosynthesis II
-	BVU_RS20790	asparagine synthase A	6	6	0
L-aspartate biosynthesis
-	BVU_RS11395	aspartate 4-decarboxylase	0	0	1
L-cystein biosynthesis I
-	BVU_RS05520	serine acetyltransferase	0	0	1
CysK	BVU_RS02055	cysteine synthase A	0	2	3
L-cystein biosynthesis IV
-	BVU_RS05985	S-adenosylmethionine synthase	3	3	3
-	BVU_RS07105	2.1.1.- / S-adenosyl-methyltransferase	0	0	2
-	BVU_RS04530	S-adenosylhomocysteine nucleosidase	1	2	1
-	BVU_RS04535	S-ribosylhomocysteine lyase	0	0	2
-	-	4.2.1.22	-	-	-
-	BVU_RS10335	2.5.1.48 / homoserine O-succinyltransferase	0	0	1
L-glutamate biosynthesis II
-	BVU_RS01250	glutamate dehydrogenase	77	66	43
-	BVU_RS01255	glutamate dehydrogenase	23	17	10
L-glutamate biosynthesis III
	BVU_RS01275	glutamate dehydrogenase	0	10	12
-	BVU_RS01250	glutamate dehydrogenase	77	66	43
L-glutamine biosynthesis I
-	BVU_RS17720	glutamine synthetase	0	1	0
-	BVU_RS17970	glutamine synthetase	10	13	8
-	BVU_RS20050	glutamine synthetase	-	-	-
L-histidine biosynthesis
-	BVU_RS11880	ATP phosphoribosyltransferase	0	1	0
-	BVU_RS19330	-	-	-	-
HisA	BVU_RS19320	5.3.1.16	4	3	4
HisH	BVU_RS20510	4.3.2.-	1	0	0
HisB	BVU_RS11895	histidinol-phosphate aminotransferase	-	-	-
HisC	BVU_RS11890	2.6.1.9	-	-	-
-	BVU_RS17605		-	-	-
HisD	BVU_RS11885	histidinal dehydrogenase	-	-	-
L-homocysteine biosynthesis
-	BVU_RS10335	homoserine O-succinyltransferase	0	0	1
-	BVU_RS03900	O-acetylhomoserine (thiol)-lyase	4	2	1
-	BVU_RS13630	O-acetylhomoserine (thiol)-lyase	7	4	7
L-homoserine biosynthesis
-	BVU_RS10375	putative aspartokinase I-homoserine dehydrogenase	26	21	9
-	BVU_RS19340	aspartokinase	13	11	8
-	BVU_RS01045	aspartate-semialdehyde dehydrogenase	22	33	31
L-isoleucine biosynthesis I
-	BVU_RS19515	threonine ammonia-lyase	-	-	-
IlvB	BVU_RS12865	acetolactate synthase large subunit	2	0	0
IlvN	BVU_RS12870	acetohydroxyacid synthase small subunit	9	13	14
IlvC	BVU_RS12880	ketol-acid reductoisomerase	22	24	26
-	BVU_RS12860	dihydroxy-acid dehydratase	6	6	5
-	BVU_RS01360	branched-chain amino acid aminotransferase	7	24	18
L-isoleucine biosynthesis IV
-	BVU_RS02915	propanoate:CoA ligase (AMP-forming)	-	-	-
-	BVU_RS00045	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS19410	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS15255	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS07510	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS04995	Long-chain-fatty-acid--CoA ligase	-	-	-
-	BVU_RS04960	Long-chain-fatty-acid--CoA ligase	-	-	-
IlvB	BVU_RS12865	acetolactate synthase large subunit	2	0	0
IlvN	BVU_RS12870	acetohydroxyacid synthase small subunit	9	13	14
IlvC	BVU_RS12880	ketol-acid reductoisomerase	22	24	26
-	BVU_RS12860	dihydroxy-acid dehydratase	6	6	5
-	BVU_RS01360	branched-chain amino acid aminotransferase	7	24	18
L-leucine biosynthesis
-	BVU_RS10160	2-isopropylmalate synthase	9	11	8
-	BVU_RS10175	2-isopropylmalate synthase	0	1	0
LeuC	BVU_RS10165	3-isopropylmalate dehydratase large subunit	7	10	6
LeuD	BVU_RS10170	3-isopropylmalate dehydratase small subunit	1	0	0
LeuB	BVU_RS10180	3-isopropylmalate dehydrogenase	3	3	2
-	BVU_RS01360	branched-chain amino acid aminotransferase	7	24	18
L-lysine biosynthesis III
-	BVU_RS10375	putative aspartokinase I-homoserine dehydrogenase	26	21	6
-	BVU_RS19340	aspartokinase	13	11	8
-	BVU_RS01045	aspartate-semialdehyde dehydrogenase	22	33	31
-	BVU_RS16620	putative dihydrodipicolinate synthase	1	4	3
DapB	-	-	-	-	-
-	BVU_RS08435	putative oxidoreductase	22	40	68
LysA	BVU_RS19345	diaminopimelate decarboxylase	2	3	1
-	BVU_RS20260	-	-	-	-
L-lysine biosynthesis VI

Name	Locus tag	function/EC No.	1/2ODmax	ODmax	ODstat
5-aminoimidazole ribonucleotide biosynthesis II
-	BVU_RS04370	-	-	-	-
-	BVU_RS19210	-	-	-	-
-	BVU_RS20040	-	-	-	-
-	BVU_RS05540	phosphoribosylamine--glycine ligase	3	3	3
-	BVU_RS13930	phosphoribosylglycinamide formyltransferase 2	1	6	5
-	BVU_RS00400	putative phosphoribosylformylglycinamidine synthase	17	10	1
-	BVU_RS00475	putative phosphoribosylformylglycinamidine cyclo-ligase	1	2	1
adenine and adenosine salvage I
-	BVU_RS08145	purine nucleoside phosphorylase I	0	4	7
-	BVU_RS06135	adenine phosphoribosyltransferase	1	1	2
adenine and adenosine salvage IV
-	BVU_RS04245	-	-	-	-
adenosine deoxyriboculeotide de novo synthesis
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
CMP phosphorylation
-	BVU_RS09815	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
guanine and guanosin salvage
-	BVU_RS08145	purine nucleoside phosphorylase I	0	4	7
Hpt	BVU_RS08545	putative hypoxanthine guanine phosphoribosyltransferase	0	3	5
Xpt	BVU_RS12750	xanthine phosphoribosyltransferase	1	0	0
guanosine deoxyriboculeotide de novo synthesis
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
pyrimidine deoxyribonucleosides salvage
-	BVU_RS09765	cytidine/deoxycytidylate deaminase	0	2	3
-	BVU_RS09305	-	-	-	-
-	BVU_RS09885	putative thymidylate synthase B	1	0	1
-	BVU_RS09305	-	-	-	-
-	-	2.7.1.74	-	-	-
pyrimidine deoxyribonucleostide phosphorylation
-	BVU_RS09815	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	-	2.7.4.9/12/13;	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
pyrimidine deoxyriboculeotide de novo synthesis
-	-	3.6.1.15;	-	-	-
	BVU_RS00015	putative ribonucleoside reductase	8	5.75	2
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	BVU_RS15615	ribonucleoside-diphosphate reductase subunit B	0	0	1
-	BVU_RS15620	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	BVU_RS07130	deoxyuridine 5'-triphosphate nucleotidohydrolase	1	0	1
-	BVU_RS01730	-	-	-	-
-	BVU_RS12965	-	-	-	-
-	BVU_RS09885	putative thymidylate synthase B	1	0	1
-	-	2.7.4.9/12/13;	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
pyrimidine nucleobases salvage I
-	BVU_RS04955	-	-	-	-
-	BVU_RS04990	-	-	-	-
pyrimidine ribonucleosides salvage I
	BVU_RS16775	cytidine/deoxycytidylate deaminase	0	2	3
-	BVU_RS11865	uridine kinase	0	0	1
-	-	2.7.1.213;	-	-	-
UMP biosynthesis II
-	BVU_RS20030	carbamoyl phosphate synthetase	28.25	13.25	3.25
-	BVU_RS20035	glutamine-hydrolyzing carbamoyl phosphate synthetase III	2.25	5.25	4.25
-	BVU_RS20255	-	-	-	-
-	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase	84	29	5
PyrB	-	aspartate carbamoyltransferase catalytic chain	0	2	0
-	BVU_RS16780	aspartate carbamoyltransferase regulatory chain	1	2	3
-	BVU_RS11365	dihydroorotase	0	0	1
-	BVU_RS19405	putative dihydroorotate dehydrogenase	0	3	2
-	BVU_RS04365	orotate phosphoribosyltransferase	13	36	48
PyrF	BVU_RS00485	orotidine 5'-phosphate decarboxylase	0	0	1.5
UMP biosynthesis III
-	BVU_RS20030	carbamyl phosphate synthetase	28.25	13.25	3.25
-	BVU_RS20035	glutamine-hydrolyzing carbamoyl phosphate synthetase III	2.25	5.25	4.25
-	BVU_RS20255	-	-	-	-
-	BVU_RS02095	glutamine-dependent carbamyl phosphate synthetase	84	29	5
PyrB	BVU_RS16775	aspartate carbamoyltransferase catalytic chain	0	2	0
-	BVU_RS16780	aspartate carbamoyltransferase regulatory chain	1	2	3
-	BVU_RS11365	dihydroorotase	0	0	1
-	BVU_RS16640	-	-	-	-
-	BVU_RS04365	orotate phosphoribosyltransferase	13	36	48
PyrF	BVU_RS00485	orotidine 5'-phosphate decarboxylase	0	0	1.5
UTP and CTP de novo biosynthesis
-	BVU_RS09490	uridylate kinase	1	1	1
-	BVU_RS09815	-	-	-	-
-	BVU_RS02410	nucleoside diphosphate kinase	0	0	4
-	BVU_RS16855	CTP synthase	9.5	8.25	3.25

Name	Locustag	function/EC No.	1/2ODmax	ODmax	ODstat
fatty acid biosynthesis initiation I
AccC	-	-	-	-	-
FabD	BVU_RS19990	malonyl CoA-acyl carrier protein transacylase	5	9	6
-	BVU_RS02315	3-oxoacyl-[acyl-carrier-protein] synthase III	12	6	2
fatty acid elongation -- saturation
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
FabG		-	-	-	-
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG	BVU_RS10065	enoyl-[acyl-carrier-protein] reductase	10	15	20
FabG	-	-	-	-	-
-	BVU_RS05130	-	-	-	-
palmitate biosynthesis II
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
FabG		-	-	-	-
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG	-	-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
-	BVU_RS00045	-	-	-	-
-	BVU_RS19410	-	-	-	-
-	BVU_RS15255	-	-	-	-
-	BVU_RS07510	-	-	-	-
lipid IVA biosynthesis
-	BVU_RS00505	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase	0	1.75	3.5
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
-	BVU_RS00495	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	1	2.25	0.75
-	BVU_RS15065	-	-	-	-
-	BVU_RS02680	-	-	-	-
LpxB	BVU_RS09710	-	-	-	-
LpxK	BVU_RS08150	-	-	-	-
palmitoleate biosynthesis I
-	BVU_RS05130	-	-	-	-
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG		-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
CDP-diacylglycerol biosynthesis I
-	BVU_RS02595	-	-	-	-
-	-	2.3.1.15;	-	-	-
-	BVU_RS11350	-	-	-	-
-	BVU_RS09720	-	-	-	-
phophatidylethanolamine biosynthesis I
-	BVU_RS09540	-	-	-	-
-	BVU_RS09545	phosphatidylserine decarboxylase	0.75	0	0
gondoate biosynthesis I (anaerobic)
-	BVU_RS05130	-	-	-	-
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG		-	-	-	-
stearate biosynthesis II
-	BVU_RS05130	-	-	-	-
-	BVU_RS01955	3-oxoacyl-[acyl-carrier protein] reductase	20	24	28
-	BVU_RS00500	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	33	15	8
FabG	-	-	-	-	-
-	BVU_RS05130	-	-	-	-
-	BVU_RS12875	-	-	-	-
-	BVU_RS00045	-	-	-	-
-	BVU_RS19410	-	-	-	-
-	BVU_RS15255	-	-	-	-
-	BVU_RS07510	-	-	-	-
peptidoglycan biosynthesis I
MurA	-	-	-	-	-
-	BVU_RS11270	-	-	-	-
-	BVU_RS07065	-	-	-	-
Murl	-	-	-	-	-
MurD	-	-	-	-	-
-	BVU_RS07090	-	-	-	-
-	BVU_RS02785	D-alanine--D-alanine ligase	0	0.75	0
-	BVU_RS08970	-	-	-	-
-	BVU_RS02365	-	-	-	-
MraY	-	2.7.8.13;	-	-	-
MurG	-	-	-	-	-

Name

average 1/2ODmax

average ODmax

average ODstat

F23-30

3,6-dimethyl-2,5-piperazinedione

8265378.743

1.099494342E7

1.384175322E7

(4-hydroxyphenyl)acetate

1420991.782

4245243.065

adenosine

1.914616041E8

2.049224602E8

4.368890932E7

AMP

2.542298812E7

alanine

3.048153434E8

1023598628

4.595991406E8

beta-Alanine

1.076268625E7

1.472702677E7

1.153525451E7

arabinose

7.267107188E7

5.558992709E7

asparagine

9194929.216

1.065020677E8

4.63419194E7

aspartate

1336480732

2.561961123E9

1979001674

N-acetyl-aspartate

1.430374177E7

1.358601966E7

1.834177997E7

4-hydroxybutanoate

4341238.489

1.611925834E7

3.671945556E7

citraconic acid

3044486.818

2.246157863E7

3.030884869E7

citrate

2.312309536E7

137330468

8.736149751E7

cytosine

2.809813669E7

8.62736557E7

3.474310703E7

erythritol

5054322.738

1.778982275E7

1.638248006E7

erythronic acid

2.272937928E7

3.634991079E7

2.688512397E7

erythrose

2.787263181E7

5.955155986E7

6765894.403

ethanolamine

4.969040726E7

1.530971721E8

3.033750008E8

ethanolaminephosphate

2.546777747E7

2.813185905E7

9443448.536

fructose

1.850946281E8

1.257242206E8

fructose-6-phosphate

2.849009979E8

1.242458087E8

fumarate

2.404458386E8

5.637002336E8

6.521516803E8

gluconic-acid

2.568004851E8

1.181679281E8

9550974.311

N-acetyl-glucosamine

9768310.857

7213146.982

glucose-6-phosphate

4.067897086E8

1.828808347E8

glutamate

1340216244

6.658121568E9

1169145644

glutamine

2.056023878E8

4.190071894E8

2.240359272E8

2-hydroxy-glutarate

3.294905939E7

3.590857646E7

glyceraldehyde

7750331.635

2.298763835E7

1.335637885E7

glycerate

3.755884754E8

2.740662649E8

1.147235845E8

2-phosphoglycerate

4572553.126

3-phosphoglycerate

2.302342533E7

3.439023367E7

5846386.359

glycerol

4.661167241E7

6.570150232E7

6.856078056E7

glycerol-3-phosphate

1.041908498E7

1.718752623E8

1.772606967E8

glycine

6.209431422E8

2057670347

4.592510717E8

glycolate

1.405411682E7

2.059001147E7

1.808473331E7

homoserine

3.335082045E8

3.591716395E8

1.399917335E7

N-2-oxocaproyl-homoserine lactone

1.517760032E7

1.867238667E7

2.293308736E7

N-2-oxooctanyol-DL-homoserine lactone

11635.331750000001

N-hexanoyl-homoserine lactone

3740822.157

homoserine-lactone

1.809613475E7

1.95027542E7

2.570292888E7

indole-3-acetaldehyde

4383476.133

9365954

8288216.327

indole-3-acetic acid

4.691573849E7

7820113.983

indole-3-lactate

2186880.9

2630974.483

2594399.649

myoinositol-2-phosphate

1.775189535E7

2.390872067E7

5423904.234

isoleucine

1.374542193E8

3.199794331E8

1.217658453E8

lactate

4.274263196E8

8.536903754E8

9.656382479E8

leucine

5.790712841E8

1439535415

5.516541295E8

maleamate

4192487.17

5795711.583

5199904.97

malate

3.923954001E8

848322731

8.097098594E8

2-isopropylmalic acid

2.890969401E7

2-methyl-malate

6.080885221E7

1.079938159E8

4.788533355E7

maltose

1.326685341E8

133750122

1800785.279

3,4-dihydroxy-mandelic acid

8064132.172

8749595.731

1.079897095E7

mannose

4.487437963E8

252336952

1.393508464E7

mannose-6-phosphate

9.636200797E7

5.955190153E7

methionine

2034513.532

7.628279346E7

2.730399671E8

Nicotinamide

1.258987794E8

501164642

3.260022908E8

nicotinic acid

1.170017169E8

2.097302329E8

4.873414118E8

phenylacetate

2956646.363

4456889.651

9633215.127

phenylalanine

4.388546669E8

4.935537981E8

1.789371058E8

phenylpyruvate

2956401.783

3496928.418

2585520.354

phosphoenolpyruvate

7904362.188

1.402691499E7

5128633.264

proline

2.666568981E8

1511423646

1605577602

2-amino-2-methyl-3-hydroxy-propanoate

3.371460358E7

putrescine

1.005640698E7

1.171328886E7

pyroglutamate

2.540546723E9

4.104969694E9

3.284833895E9

pyrophosphate

9.711275107E7

pyruvate

5.764449038E7

1.054069723E8

4.67062416E7

3-hydroxypyruvate

2.813426578E7

3.874564615E7

4.709903788E7

rhamnose

5467552.28

7287586.92

ribitol

1000000000

ribose

694367707

5.328332125E8

4.384904984E8

sedoheptulose-7-phosphate

5.917838268E7

7.411755046E7

3993024.476

serine

1276441786

3.335129505E9

7.695622812E8

cycloserine

5.084750116E7

2.600599198E8

8.100619203E7

N-acetyl-serine

1.059336746E8

1.842237611E8

3-dehydroshikimate

2915323.859

3497219.62

1688258.611

spermine

3541465.43

4704480.265

3252199.329

succinate

2.657480135E9

4.484433305E9

5.284361116E9

threonine

1749332247

3.39003851E9

8.915184433E7

threose

3516783.548

4772561.199

5178304.532

thymine

589083380

6.178797086E8

2.814467823E8

tryptophan

2539672.872

4857143.382

6075927.328

tyrosine

9.550352555E7

1.368401247E8

7.821043712E7

Unknown#1325.8-pin-mhe_007

2.746316097E7

3.831566682E7

3.146717502E7

Unknown#1366.59-ppu-cja_010

1.028040972E8

1.286606871E8

3.83307523E7

Unknown#1366.9-pin-mhe_011

5.100790519E7

Unknown#1392.1-pin-mhe_012

8.392893011E7

Uracil

1702329403

2117311135

1641307740

uridine

1.474320764E7

8750848.652

valine

9.230785067E8

2.592221665E9

3.434458049E8

xylitol

2.239443265E7

xylose

1.166395907E7

1.05930369E7

3438379.921

xylulose

7.952552253E7

7.546167784E7

xylulose-5-phosphate

855942.3938

1592458.039

CoA	1/2ODmax				ODmax				Odstat
CoenzymeA	4912868	4693358	4415376	4029986	7999299	5436994	5471682	7341028	3722929	3119229	3701465	3818397
Acetyl-CoA	58415094	60965398	63465947	60060491	45393976	31968886	35167580	45404304	44039022	39014335	41993660	38573573
Propenoyl-CoA	2135768	2095049	1494035	1733782	337249	305428	301575	250793	223376	182202	258149	281767
Propanoyl-CoA	5023647	5226892	4527377	4287440	1943418	2347079	1925851	2219608	7656282	5159891	6943862	6861228
Butanoyl-CoA	4776301	5393140	4026315	5894770	20097739	17224231	12407080	17225271	14975138	14403527	11433604	11987066
Isobutanoyl-CoA	4371966	4922817	4109338	4505565	15840788	14356691	11994533	13954118	8893864	8921627	6932793	9596689
(S)-2-Methylbutanoyl-CoA	9949737	10129657	8731578	8150428	15483160	15620341	18433654	20650339	44850423	36776164	32778771	48635322
Isovaleryl-CoA	4999600	4500310	3911202	3374602	25918635	19124343	20376423	23534793	55823717	35807178	53743495	46561363
Pentanoyl-CoA	824233	868427	721083	755892	1771268	1402055	1438430	1969274	5972812	6884757	6884792	7280826
Malonyl-CoA	177622	217814	177321	233897	732199	626023	648105	713322	871181	1022431	866700	887095
Methylmalonyl-CoA	5123649	4195843	3916541	3763798	2875768	1995122	2569047	1923211	9979938	7408454	9096165	10471671
Succinyl-CoA	21169812	17919356	22625778	14636368	19358027	22797158	14771345	17849154	31131938	26989307	33768034	33003571
Cyclohexa-1,5-dienecarbonyl-CoA	1227884	1306538	925570	1214402	2339858	2739259	2490548	2597333	7394661	5144411	8170709	7629941
Cyclohex-1-ene-1-carboxyl-CoA	221606	177166	155359	182230	1090067	856545	745147	857469	595135	746863	741959	566189
Methylsuccinyl-CoA	430019	486722	340381	425041	396548	429238	333357	396585	485835	408756	350739	325660
C28H42N7O18P3S, similar to beta-(2-Furyl)propionyl-CoA	1739194	1817161	1652515	1545113	1034390	1076613	1304001	1434617	605293	588617	823728	772815
C29H41N8O17P3S, exact mass based	1956558	1959717	1510641	1436500	11001764	9401792	8029753	10627222	9750493	8677756	9005034	11810337
Phenylglyoxylyl-CoA	81301	97570	84085	88380	883414	781849	817047	1053451	1346654	1350960	1368696	1943608
C29H43N8O17P3S, similar to N-Methylanthraniloyl-CoA	3621909	4315683	2862026	3731336	3989842	4396538	3225252	3857268	1260793	990580	1201589	1246272
2,3-Dihydro-2,3-dihydroxybenzoyl-CoA	610018	585519	641224	594254	1103750	1019841	903896	818590	473518	456067	498651	496308

100

Name	average 1/2ODmax	average ODmax	average ODstat
(4-hydroxyphenyl)acetate	0	0	9289.599772
1,6-anhydro-glucose	13241.09054	21598.00354	5276.194721
1-O-methyl-alpha-glucopyranoside	120221.2645	22595.36598	0
1-pyrroline-2-carboxylate	11399.37926	12334.10381	12984.44374
2,4-dihydroxybutanoate	23100.79123	17651.50354	17132.32856
2-amino-2-methylpropane-1,3-diol	17292.52606	304397.5939	119436.4133
2-aminobutanoate	13801.57337	64058.93625	18782.03809
2-aminoisobutanoate	1846.437294	2522.104867	981.3441083
2-hydroxy-4-(methylthio)butanoate	1062.234506	4951.057944	21931.4075
2-hydroxybutanoate	0	21893.13429	20704.05855
2-hydroxy-glutarate	9126.16993	93357.42608	124743.2806
2-hydroxyisocaproate	0	6154.527856	7563.933773
2-isopropylmalic acid	9318.271904	32305.2513	26006.79167
2-methyl-malate	47322.16999	147337.0056	148228.6592
2-oxobutanoate	1706.542423	5182.400179	1972.253655
2-oxoglutarate	3825.152833	16351.44434	8373.118877
3,4-dihydroxybenzoate	2154.914701	2729.888575	1818.869325
3-aminoisobutanoate	51072.72964	53180.989	52068.8065
3-dehydroshikimate	0	4274.800011	2519.69768
3-hydroxybenzoate	1118.434005	1577.661383	1487.247318
3-hydroxyindole	145483.7357	145062.1962	161133.4753
3-hydroxyisobutanoate	1443.406185	2030.471884	4677.262604
3-hydroxyisovaleric acid	0	0	13350.90751
4-hydroxybenzoate	4347.213233	9265.616971	6439.181642
4-hydroxybutanoate	8341.833798	57319.67342	130046.4036
4-hydroxyphenylacetonitrile	1702.447467	1965.253942	2211.86605
4-oxobutanoate	0	2897.024902	2276.482706
4-oxopentanoic acid	12512.22651	14994.85326	15058.76188
6-deoxy-mannose	115413.7129	40962.12844	1007.050309
alanine	186437.366	675858.5938	377179.5159
aminomalonic acid	0	32029.00758	30254.65806
arabinonate	2480.46599	2885.912754	826.9863153
arabinono-1,4-lactone	6041.827278	8305.663046	0
arabinose	113599.8842	18742.39801	0
asparagine	0	3974.843049	0
aspartate	0	22641.73173	0
benzene-1,2,4-triol	2685.662953	6543.742449	9444.725211
benzoate	164377.0865	214497.77	234102.4865
beta-Alanine	111004.0078	17010.72479	25348.08442
butylamine	2583.330356	7800.087292	3031.189135
citraconic acid	13291.46357	20733.4688	14481.70315
citrate	19032.68054	31779.28151	26073.8232
cysteine	0	8649.927068	7935.665552
diethylene glycol	114075.8286	126325.7524	147065.7096
erythritol	6432.784773	20202.39974	35682.00093
erythronic acid	17425.01564	52475.53757	36736.3588
erythronic acid-1,4-lactone	5212.858485	16058.7725	12997.351
erythrose	21921.41473	78241.62423	44883.12959
ethanolamine	30960.5817	139357.8415	274287.2696
fructose	518667.171	284286.21	3647.387377
fumarate	74158.3667	89377.55297	77311.96085
galactose	287798.7167	136190.6944	0
gluconic-acid	53450.97373	24254.20329	5112.018837
glucose	1401777.391	680722.0745	148902.9758
glutamine	96326.14762	126582.3145	142426.8809
glyceraldehyde	9937.889679	26075.91615	15092.50598
glycerate	38642.76494	138259.5499	57055.02788
glycerol-3-phosphate	0	2377.851981	1843.756899
glycine	25679.78888	117986.9177	76740.94961
glycolate	7575.441393	14218.2835	10748.57535
hydrocinnamic acid	18962.46781	28176.20618	28493.75941
hydroquinone	5964.373506	1497.075992	1384.895708
hydroxylamine	42642.97452	54994.37608	55226.30733
indole-3-lactate	0	510.5191295	568.7783619
isocaproate	0	5383.709628	3284.426331
isoleucine	16528.71098	38714.57974	18782.29433
isomaltose*	285.1419036	630.276348	0
lactate	782860.4662	994265.4398	1215024.733
laminaribiose*	3458.983938	8499.335859	606.5945435
leucine	0	54179.53124	24567.30548
malate	415601.0876	965945.4366	945762.7512
maleate	7494.438311	42037.55822	21269.74702
malonamide	313710.7895	438380.1751	386739.6702
malonic acid	0	1656.04694	1719.925459
mannonic acid-1,4-lactone	0	492.9970468	0
mannose	159580.4492	47561.44195	0
mannosylglycerate	8411.381146	0	0
methyl 3,6-anhydro-alpha-galactopyranoside	3513.663272	4304.23687	3661.989529
myo-inositol	0	850.0713329	0
N-acetyl-galactosamine	3671.443836	629.3391122	0
N-acetyl-glucosamine	4287.622265	1006.047384	0
N-acetyl-phenylalanine	0	0	972.2001417
nicotinic acid	21321.99894	26841.36041	121129.9429
oxalate	9393.353043	11625.98082	10514.72433
phenylpyruvate	2495.374715	4905.818014	4074.834533
proline	54337.72263	963555.2114	789359.9671
propane-1,2-diol	12926.23761	15962.30631	31277.14495
propane-1,3-diol	105286.998	53200.53431	0
putrescine	8087.277356	0	0
pyridoxal	0	1363.784526	519.1638029
pyroglutamate	51637.52579	282849.0538	157454.2446
pyrrole-2-carboxylate	6045.629836	12082.07825	8520.154384
pyruvate	126135.6008	41206.06283	13904.45386
quinate	1138.771335	1889.73512	1362.196213
ribonate	3637.443671	6401.706855	4352.95201
ribose	35320.99403	54534.9951	38510.98767
shikimic acid	0	130438.5169	74191.88895
sorbitol	7360.274366	0	0
succinate	2298.598083	2452304.88	2784346.948