Selected Cell
Cell:
Value:
Outline
1P_vulgatus_ATCC_8482
2Proteomic_data
3Amino_acids
4Nucleotide
5Fatty_acdis_cell_wall
6Metabolites
7Metabolome_CoA
8Exo_Metabolome
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| Tab | Name | Contents | |||||||
| 1 | 1P_vulgatus_ATCC_8482 | Genome of P. vulgatus ATCC 8482 | |||||||
| 2 | 2Proteomics_data | Identified proteins with peptide counts | |||||||
| 3 | 3Amino_acids | BioCyc-predicted biosynthesis of amino acids including identified proteins | |||||||
| 4 | 4Nucleotide | BioCyc-predicted biosynthesis of nucleotides including identified proteins | |||||||
| 5 | 5Fatty_acdis_cell_wall | BioCyc-predicted biosynthesis of fatty acids and cell wall including identified proteins | |||||||
| 6 | 6Metabolites | Metabolites of the intracellular metabolome | |||||||
| 7 | 7Metabolome_CoA | CoAs of the metabolome | |||||||
| 8 | 8Exo_Metabolome | Metabolites of the extracellular metabolome | |||||||
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| BVU_RS22595 | BVU_1438 | 1917421 | 1918254 | 277 | BVU_RS22595 | AidA/PixA family protein | |||
| BVU_RS07285 | BVU_1439 | 1918579 | 1919982 | 467 | c | BVU_RS07285 | hypothetical protein | ||
| BVU_RS07290 | BVU_1440 | 1920194 | 1921150 | 318 | c | BVU_RS07290 | toprim domain-containing protein | ||
| BVU_RS22365 | 1921981 | 1922136 | 51 | c | BVU_RS22365 | hypothetical protein | |||
| BVU_RS07305 | BVU_1443 | 1922731 | 1923522 | 263 | BVU_RS07305 | hypothetical protein | |||
| BVU_RS07310 | BVU_1444 | 1923519 | 1923962 | 147 | c | BVU_RS07310 | hypothetical protein | ||
| BVU_RS07315 | BVU_1445 | 1924070 | 1924519 | 149 | c | BVU_RS07315 | hypothetical protein | ||
| BVU_RS07320 | BVU_1446 | 1924491 | 1925330 | 279 | c | BVU_RS07320 | hypothetical protein | ||
| BVU_RS21035 | BVU_1447 | 1925314 | 1926612 | 432 | c | BVU_RS21035 | PD-(D/E)XK nuclease family protein | ||
| BVU_RS07330 | BVU_1448 | 1926691 | 1927050 | 119 | c | BVU_RS07330 | hypothetical protein | ||
| BVU_RS07335 | BVU_1449 | 1927217 | 1928356 | 379 | c | BVU_RS07335 | PDDEXK nuclease domain-containing protein | ||
| BVU_RS07340 | BVU_1450 | 1928382 | 1928984 | 200 | c | BVU_RS07340 | site-specific integrase | ||
| BVU_RS07345 | BVU_1451 | 1928953 | 1929423 | 156 | BVU_RS07345 | Fic family protein | |||
| BVU_RS07350 | 1929435 | 1929752 | 105 | BVU_RS07350 | DUF3784 domain-containing protein | ||||
| BVU_RS07355 | BVU_1453 | 1930057 | 1930395 | 112 | BVU_RS07355 | hypothetical protein | |||
| BVU_RS07360 | BVU_1454 | 1930420 | 1932726 | 768 | BVU_RS07360 | outer membrane beta-barrel protein | |||
| BVU_RS21445 | 1932730 | 1933080 | 116 | BVU_RS21445 | hypothetical protein | ||||
| BVU_RS07365 | BVU_1455 | 1933021 | 1933785 | 254 | c | BVU_RS07365 | helix-turn-helix transcriptional regulator | ||
| BVU_RS07370 | BVU_1456 | 1933891 | 1935546 | 551 | c | BVU_RS07370 | IS1182 family transposase | ||
| BVU_RS07375 | BVU_1457 | 1935905 | 1936810 | 301 | BVU_RS07375 | IS982 family transposase | |||
| BVU_RS07380 | BVU_1458 | 1937491 | 1939128 | 545 | c | BVU_RS07380 | B12-binding domain-containing radical SAM protein | ||
| BVU_RS07385 | BVU_1459 | 1939144 | 1939665 | 173 | c | BVU_RS07385 | GNAT family N-acetyltransferase | ||
| BVU_RS07390 | BVU_1460 | 1939683 | 1940114 | 143 | c | BVU_RS07390 | GNAT family N-acetyltransferase | ||
| BVU_RS07395 | BVU_1461 | 1940219 | 1940704 | 161 | BVU_RS07395 | GNAT family N-acetyltransferase | |||
| BVU_RS07400 | BVU_1462 | 1940778 | 1941134 | 118 | BVU_RS07400 | DUF488 family protein | |||
| BVU_RS07405 | BVU_1463 | 1941311 | 1942822 | 503 | accC | 6.3.4.14 | acetyl-CoA carboxylase biotin carboxylase subunit | ||
| BVU_RS07410 | BVU_1464 | 1942847 | 1943362 | 171 | BVU_RS07410 | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit | |||
| BVU_RS07415 | BVU_1465 | 1943365 | 1944897 | 510 | BVU_RS07415 | acyl-CoA carboxylase subunit beta | |||
| BVU_RS07420 | BVU_1466 | 1945028 | 1946338 | 436 | c | BVU_RS07420 | tripeptidyl aminopeptidase | ||
| BVU_RS07425 | BVU_1467 | 1946443 | 1947066 | 207 | BVU_RS07425 | hypothetical protein | |||
| BVU_RS07430 | BVU_1468 | 1947075 | 1947638 | 187 | BVU_RS07430 | 2.5.1.17 | cob(I)yrinic acid a,c-diamide adenosyltransferase | ||
| BVU_RS07435 | BVU_1469 | 1947710 | 1947931 | 73 | BVU_RS07435 | DUF2795 domain-containing protein | |||
| BVU_RS07440 | BVU_1470 | 1948095 | 1948694 | 199 | BVU_RS07440 | porin family protein | |||
| BVU_RS07445 | BVU_1471 | 1948767 | 1951229 | 820 | priA | primosomal protein N' | |||
| BVU_RS07450 | BVU_1472 | 1951277 | 1951987 | 236 | BVU_RS07450 | phosphatase | |||
| BVU_RS07455 | BVU_1473 | 1951995 | 1952465 | 156 | BVU_RS07455 | low molecular weight phosphotyrosine protein phosphatase | |||
| BVU_RS07460 | BVU_1474 | 1952440 | 1954497 | 685 | c | BVU_RS07460 | HDIG domain-containing protein | ||
| BVU_RS07465 | BVU_1475 | 1954579 | 1956096 | 505 | gltX | 6.1.1.17 | glutamate--tRNA ligase | ||
| BVU_RS07470 | BVU_1476 | 1956109 | 1957329 | 406 | BVU_RS07470 | 3-deoxy-D-manno-octulosonic acid transferase | |||
| BVU_RS22170 | 1957866 | 1957988 | 40 | BVU_RS22170 | left-handed beta-roll domain-containing protein | ||||
| BVU_RS07475 | BVU_1477 | 1958531 | 1959019 | 162 | BVU_RS07475 | AraC family transcriptional regulator | |||
| BVU_RS07480 | BVU_1478 | 1959097 | 1961955 | 952 | BVU_RS07480 | PL29 family lyase N-terminal domain-containing protein | |||
| BVU_RS07485 | BVU_1479 | 1962094 | 1962750 | 218 | BVU_RS07485 | hypothetical protein | |||
| BVU_RS07490 | BVU_1480 | 1962701 | 1963591 | 296 | BVU_RS07490 | NUDIX domain-containing protein | |||
| BVU_RS07495 | BVU_1481 | 1963599 | 1964441 | 280 | BVU_RS07495 | polysaccharide biosynthesis protein | |||
| BVU_RS07500 | BVU_1482 | 1964548 | 1964925 | 125 | BVU_RS07500 | hypothetical protein | |||
| BVU_RS07505 | BVU_1483 | 1964931 | 1965995 | 354 | c | BVU_RS07505 | M20 family metallo-hydrolase | ||
| BVU_RS07510 | BVU_1484 | 1966209 | 1968014 | 601 | BVU_RS07510 | long-chain fatty acid--CoA ligase | |||
| BVU_RS07515 | BVU_1485 | 1968072 | 1969187 | 371 | prfB | peptide chain release factor 2 | |||
| BVU_RS07525 | BVU_1486 | 1969482 | 1969952 | 156 | BVU_RS07525 | CYTH domain-containing protein | |||
| BVU_RS07530 | BVU_1487 | 1970042 | 1972516 | 824 | BVU_RS07530 | TonB-dependent receptor family protein | |||
| BVU_RS07535 | BVU_1488 | 1972685 | 1973188 | 167 | BVU_RS07535 | RNA polymerase sigma factor | |||
| BVU_RS07540 | BVU_1489 | 1973269 | 1973655 | 128 | c | BVU_RS07540 | VanZ family protein | ||
| BVU_RS07545 | BVU_1490 | 1973751 | 1975115 | 454 | BVU_RS07545 | sodium-dependent transporter | |||
| BVU_RS07550 | BVU_1491 | 1975123 | 1976025 | 300 | BVU_RS07550 | helix-hairpin-helix domain-containing protein | |||
| BVU_RS07555 | BVU_1492 | 1976170 | 1977528 | 452 | BVU_RS07555 | transposase | |||
| BVU_RS07560 | BVU_1493 | 1977712 | 1979130 | 472 | c | BVU_RS07560 | alkaline phosphatase | ||
| BVU_RS07565 | BVU_1494 | 1979434 | 1979934 | 166 | BVU_RS07565 | hypothetical protein | |||
| BVU_RS07575 | BVU_1495 | 1980542 | 1982197 | 551 | BVU_RS07575 | IS1182 family transposase | |||
| BVU_RS07580 | BVU_1496 | 1982491 | 1983687 | 398 | c | BVU_RS07580 | hypothetical protein | ||
| BVU_RS07585 | BVU_1497 | 1983700 | 1984047 | 115 | c | BVU_RS07585 | helix-turn-helix domain-containing protein | ||
| BVU_RS07590 | BVU_1498 | 1984092 | 1985477 | 461 | c | BVU_RS07590 | helix-turn-helix domain-containing protein | ||
| BVU_RS07595 | BVU_1499 | 1985555 | 1986394 | 279 | c | BVU_RS07595 | AraC family transcriptional regulator | ||
| BVU_RS07600 | BVU_1500 | 1986505 | 1987101 | 198 | BVU_RS07600 | sugar O-acetyltransferase | |||
| BVU_RS07605 | BVU_1501 | 1987106 | 1987744 | 212 | BVU_RS07605 | HAD hydrolase-like protein | |||
| BVU_RS07610 | BVU_1502 | 1987983 | >1988252 | BVU_RS07610 | hypothetical protein | ||||
| BVU_RS07615 | BVU_1503 | 1988890 | 1991292 | 800 | c | BVU_RS07615 | S8 family peptidase | ||
| BVU_RS07620 | BVU_1504 | 1991306 | 1992265 | 319 | c | BVU_RS07620 | ATP-binding protein | ||
| BVU_RS07625 | BVU_1505 | 1992589 | 1993452 | 287 | BVU_RS07625 | toprim domain-containing protein | |||
| BVU_RS07630 | BVU_1506 | 1993549 | 1994328 | 259 | c | BVU_RS07630 | DUF4121 family protein | ||
| BVU_RS07640 | BVU_1507 | 1994745 | 1996043 | 432 | BVU_RS07640 | ATP-binding protein | |||
| BVU_RS07645 | BVU_1508 | 1996055 | 1998910 | 951 | BVU_RS07645 | DEAD/DEAH box helicase family protein | |||
| BVU_RS07650 | BVU_1509 | 1999130 | 2000209 | 359 | c | BVU_RS07650 | hypothetical protein | ||
| BVU_RS07655 | BVU_1510 | 2000226 | 2000552 | 108 | c | BVU_RS07655 | hypothetical protein | ||
| BVU_RS07660 | BVU_1511 | 2000651 | 2001001 | 116 | BVU_RS07660 | transposase family protein | |||
| BVU_RS07665 | BVU_1512 | 2001012 | 2002016 | 334 | BVU_RS07665 | transposase | |||
| BVU_RS07670 | BVU_1513 | 2002132 | 2002506 | 124 | BVU_RS07670 | hypothetical protein | |||
| BVU_RS07675 | BVU_1514 | 2002684 | 2002983 | 99 | c | BVU_RS07675 | helix-turn-helix domain-containing protein | ||
| BVU_RS07680 | BVU_1515 | 2002991 | 2003275 | 94 | c | BVU_RS07680 | helix-turn-helix domain-containing protein | ||
| BVU_RS07685 | BVU_1516 | 2003745 | 2004038 | 97 | BVU_RS07685 | helix-turn-helix domain-containing protein | |||
| BVU_RS07690 | BVU_1517 | 2004095 | 2004799 | 234 | BVU_RS07690 | NYN domain-containing protein | |||
| BVU_RS07695 | BVU_1518 | 2004883 | 2005674 | 263 | c | BVU_RS07695 | PRTRC system ThiF family protein | ||
| BVU_RS07700 | BVU_1519 | 2005671 | 2006372 | 233 | c | BVU_RS07700 | prokaryotic E2 ligase family D protein | ||
| BVU_RS07705 | BVU_1520 | 2006383 | 2007492 | 369 | c | BVU_RS07705 | hypothetical protein | ||
| BVU_RS07710 | BVU_1521 | 2007529 | 2007750 | 73 | c | BVU_RS07710 | PRTRC system protein C | ||
| BVU_RS07715 | BVU_1522 | 2007773 | 2008828 | 351 | c | BVU_RS07715 | PRTRC system protein E | ||
| BVU_RS07720 | 2008848 | 2009057 | 69 | c | BVU_RS07720 | hypothetical protein | |||
| BVU_RS21460 | 2009076 | 2009288 | 70 | c | BVU_RS21460 | hypothetical protein | |||
| BVU_RS07730 | BVU_1523 | 2009590 | 2011362 | 590 | c | BVU_RS07730 | 5.6.2.- | DNA topoisomerase | |
| BVU_RS07735 | BVU_1524 | 2011435 | 2011710 | 91 | c | BVU_RS07735 | DUF4099 domain-containing protein | ||
| BVU_RS07740 | BVU_1525 | 2011765 | 2013603 | 612 | c | BVU_RS07740 | DUF3945 domain-containing protein | ||
| BVU_RS07750 | BVU_1526 | 2013972 | 2014262 | 96 | c | BVU_RS07750 | hypothetical protein | ||
| BVU_RS07755 | BVU_1527 | 2014461 | 2015684 | 407 | BVU_RS07755 | site-specific integrase | |||
| BVU_RS07765 | BVU_1529 | 2016179 | 2016727 | 182 | BVU_RS07765 | UpxY family transcription antiterminator | |||
| BVU_RS07770 | BVU_1530 | 2016752 | 2017858 | 368 | BVU_RS07770 | undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase | |||
| BVU_RS07775 | BVU_1531 | 2017885 | 2018679 | 264 | BVU_RS07775 | polysaccharide export protein | |||
| BVU_RS07780 | BVU_1532 | 2018721 | 2021087 | 788 | BVU_RS07780 | polysaccharide biosynthesis tyrosine autokinase | |||
| BVU_RS07785 | BVU_1533 | 2021147 | 2021851 | 234 | BVU_RS07785 | hypothetical protein | |||
| BVU_RS07790 | BVU_1534 | 2021933 | 2023138 | 401 | wecC | 1.1.1.336 | UDP-N-acetyl-D-mannosamine dehydrogenase | ||
| BVU_RS07800 | BVU_1536 | 2023957 | 2025300 | 447 | BVU_RS07800 | oligosaccharide flippase family protein |
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| Average [peptide count] | |||||||||
| Accession No. | Locustag old | Locustag | Genome predicted funtion | 1/2ODmax | ODmax | ODstat | |||
| ABR37733.1 | BVU_0003 | BVU_RS00015 | putative ribonucleoside reductase [Phocaeicola vulgatus ATCC 8482] | 8 | 5.75 | 2 | |||
| ABR37734.1 | BVU_0004 | BVU_RS00020 | putative exported protein [Phocaeicola vulgatus ATCC 8482] | 2 | 0 | 0 | |||
| ABR37741.1 | BVU_0011 | BVU_RS00060 | putative 50S ribosomal protein L9 [Phocaeicola vulgatus ATCC 8482] | 14 | 13.75 | 13 | |||
| ABR37742.1 | BVU_0012 | BVU_RS00065 | 30S ribosomal protein S18 [Phocaeicola vulgatus ATCC 8482] | 71 | 56.25 | 69 | |||
| ABR37743.1 | BVU_0013 | BVU_RS00070 | 30S ribosomal protein S6 [Phocaeicola vulgatus ATCC 8482] | 10.5 | 16.25 | 16.75 | |||
| ABR37745.1 | BVU_0015 | BVU_RS00085 | two-component system response regulator [Phocaeicola vulgatus ATCC 8482] | 24.75 | 59.75 | 69.75 | |||
| ABR37746.1 | BVU_0016 | BVU_RS00090 | two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482] | 5.25 | 1.25 | 2.25 | |||
| ABR37747.1 | BVU_0017 | BVU_RS00095 | putative elongation factor G [Phocaeicola vulgatus ATCC 8482] | 0 | 36 | 17.75 | |||
| ABR37776.1 | BVU_0046 | BVU_RS00240 | phosphoglucomutase/phosphomannomutase [Phocaeicola vulgatus ATCC 8482] | 1.75 | 5.5 | 5.25 | |||
| ABR37803.1 | BVU_0073 | BVU_RS00375 | DnaJ domain protein [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 1 | |||
| ABR37808.1 | BVU_0078 | BVU_RS00400 | putative phosphoribosylformylglycinamidine synthase [Phocaeicola vulgatus ATCC 8482] | 16.5 | 9.75 | 1 | |||
| ABR37812.1 | BVU_0082 | BVU_RS00420 | putative secreted protein [Phocaeicola vulgatus ATCC 8482] | 2.75 | 1.25 | 0 | |||
| ABR37814.1 | BVU_0084 | BVU_RS00430 | putative endonuclease/exonuclease/phosphatase family protein [Phocaeicola vulgatus ATCC 8482] | 0.75 | 0 | 3 | |||
| ABR37815.1 | BVU_0085 | BVU_RS00435 | glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482] | 4.75 | 6.5 | 8.5 | |||
| ABR37816.1 | BVU_0086 | BVU_RS00440 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 14.75 | 18 | 9.75 | |||
| ABR37822.1 | BVU_0092 | BVU_RS00475 | putative phosphoribosylformylglycinamidine cyclo-ligase [Phocaeicola vulgatus ATCC 8482] | 0.75 | 1.75 | 0.5 | |||
| ABR37825.1 | BVU_0095 | BVU_RS00485 | orotidine 5'-phosphate decarboxylase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1.5 | |||
| ABR37827.1 | BVU_0097 | BVU_RS00495 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Phocaeicola vulgatus ATCC 8482] | 1 | 2.25 | 0.75 | |||
| ABR37828.1 | BVU_0098 | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Phocaeicola vulgatus ATCC 8482] | 32.75 | 15.25 | 8.25 | |||
| ABR37829.1 | BVU_0099 | BVU_RS00505 | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482] | 0 | 1.75 | 3.5 | |||
| ABR37853.1 | BVU_0123 | BVU_RS00625 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 3.25 | 4.75 | |||
| ABR37871.1 | BVU_0143 | BVU_RS00725 | GTP cyclohydrolase II [Phocaeicola vulgatus ATCC 8482] | 3.25 | 3 | 3.5 | |||
| ABR37872.1 | BVU_0144 | BVU_RS00730 | aspartate aminotransferase [Phocaeicola vulgatus ATCC 8482] | 20.5 | 20.5 | 20.25 | |||
| ABR37874.1 | BVU_0146 | BVU_RS00745 | 5'-nucleotidase precursor [Phocaeicola vulgatus ATCC 8482] | 1 | 0.5 | 0 | |||
| ABR37875.1 | BVU_0147 | BVU_RS00750 | putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase [Phocaeicola vulgatus ATCC 8482] | 3 | 2 | 1.5 | |||
| ABR37876.1 | BVU_0148 | BVU_RS00755 | 50S ribosomal protein L19 [Phocaeicola vulgatus ATCC 8482] | 16.5 | 24 | 29 | |||
| ABR37885.1 | BVU_0157 | BVU_RS00815 | conserved protein, with a weak D-galactarate dehydratase/altronate hydrolase domain [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 0 | |||
| ABR37897.1 | BVU_0169 | BVU_RS00870 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 7 | 0 | 6.25 | |||
| ABR37919.1 | BVU_0191 | BVU_RS00975 | ROK family transcriptional repressor, with glucokinase domain [Phocaeicola vulgatus ATCC 8482] | 8.25 | 12.5 | 15.75 | |||
| ABR37923.1 | BVU_0195 | BVU_RS00995 | membrane fusion efflux protein [Phocaeicola vulgatus ATCC 8482] | 14.5 | 10 | 12.25 | |||
| ABR37924.1 | BVU_0196 | BVU_RS01000 | putative outer membrane efflux protein [Phocaeicola vulgatus ATCC 8482] | 1.75 | 2.5 | 2 | |||
| ABR37926.1 | BVU_0198 | BVU_RS01010 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 1.75 | 4.25 | |||
| ABR37928.1 | BVU_0200 | BVU_RS01020 | putative alcohol dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 1 | |||
| ABR37929.1 | BVU_0201 | BVU_RS01025 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 4.5 | 4.5 | |||
| ABR37933.1 | BVU_0205 | BVU_RS01045 | aspartate-semialdehyde dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 22.25 | 32.75 | 31.25 | |||
| ABR37934.1 | BVU_0206 | BVU_RS01050 | putative FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [Phocaeicola vulgatus ATCC 8482] | 8.25 | 5 | 5.5 | |||
| ABR37935.1 | BVU_0207 | BVU_RS01055 | glycyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482] | 4 | 5.75 | 2 | |||
| ABR37960.1 | BVU_0238 | BVU_RS01205 | putative membrane fusion protein transporter [Phocaeicola vulgatus ATCC 8482] | 10.75 | 7.25 | 6.75 | |||
| ABR37963.1 | BVU_0241 | BVU_RS01220 | acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [Phocaeicola vulgatus ATCC 8482] | 2 | 2.75 | 1.5 | |||
| ABR37964.1 | BVU_0242 | BVU_RS01225 | outer membrane protein oprM precursor [Phocaeicola vulgatus ATCC 8482] | 35.25 | 11.5 | 8 | |||
| ABR37965.1 | BVU_0243 | BVU_RS01230 | AcrB/AcrD family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482] | 7 | 1 | 1.75 | |||
| ABR37966.1 | BVU_0244 | BVU_RS01235 | AcrA/AcrE family multidrug resistance protein [Phocaeicola vulgatus ATCC 8482] | 50 | 24 | 20 | |||
| ABR37967.1 | BVU_0245 | BVU_RS01240 | NADP-dependent malate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 17.5 | 23.25 | 11.75 | |||
| ABR37968.1 | BVU_0246 | BVU_RS01250 | NADP-specific glutamate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 76.5 | 66.25 | 43 | |||
| ABR37969.1 | BVU_0247 | BVU_RS01255 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 23.25 | 16.5 | 9.75 | |||
| ABR37970.1 | BVU_0248 | BVU_RS01260 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 23.25 | 13 | 15.25 | |||
| ABR37971.1 | BVU_0249 | BVU_RS01265 | hypothetical protein BVU_0249 [Phocaeicola vulgatus ATCC 8482] | 58.5 | 38.25 | 62.75 | |||
| ABR37973.1 | BVU_0251 | BVU_RS01275 | NAD-specific glutamate dehydrogenase 1 [Phocaeicola vulgatus ATCC 8482] | 0 | 10.25 | 11.75 | |||
| ABR37974.1 | BVU_0252 | BVU_RS01280 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1 | 1 | 0 | |||
| ABR37978.1 | BVU_0256 | BVU_RS01300 | malate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 56.5 | 72 | 86 | |||
| ABR37979.1 | BVU_0257 | BVU_RS01305 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 22 | 10.75 | 15.25 | |||
| ABR37983.1 | BVU_0263 | BVU_RS01330 | lipoprotein [Phocaeicola vulgatus ATCC 8482] | 64 | 61.5 | 65.25 | |||
| ABR37986.1 | BVU_0266 | BVU_RS01345 | Mrp/Nbp35 family ATP-binding protein [Phocaeicola vulgatus ATCC 8482] | 3.75 | 4.75 | 7.75 | |||
| ABR37988.1 | BVU_0268 | BVU_RS01355 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 8.75 | 2.25 | 6 | |||
| ABR37989.1 | BVU_0269 | BVU_RS01360 | branched-chain amino acid aminotransferase [Phocaeicola vulgatus ATCC 8482] | 6.75 | 23.75 | 17.5 | |||
| ABR38002.1 | BVU_0282 | BVU_RS01425 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 1 | 1.25 | 1.75 | |||
| ABR38018.1 | BVU_0298 | BVU_RS01520 | dTDP-glucose 4,6-dehydratase [Phocaeicola vulgatus ATCC 8482] | 2 | 6.5 | 6.5 | |||
| ABR38029.1 | BVU_0309 | BVU_RS01575 | putative methylmalonyl-CoA mutase small subunit [Phocaeicola vulgatus ATCC 8482] | 11.5 | 7.75 | 5 | |||
| ABR38030.1 | BVU_0310 | BVU_RS01580 | methylmalonyl-CoA mutase large subunit [Phocaeicola vulgatus ATCC 8482] | 16.25 | 19 | 6.5 | |||
| ABR38035.1 | BVU_0315 | BVU_RS01605 | putative two-component system sensor histidine kinase [Phocaeicola vulgatus ATCC 8482] | 1.5 | 1.75 | 1 | |||
| ABR38036.1 | BVU_0316 | BVU_RS01610 | putative membrane transport protein [Phocaeicola vulgatus ATCC 8482] | 2.5 | 0 | 0.75 | |||
| ABR38037.1 | BVU_0317 | BVU_RS01615 | putative cation efflux pump [Phocaeicola vulgatus ATCC 8482] | 0 | 0.75 | 0 | |||
| ABR38038.1 | BVU_0318 | BVU_RS01620 | putative cation efflux pump [Phocaeicola vulgatus ATCC 8482] | 1.5 | 5.25 | 3.5 | |||
| ABR38039.1 | BVU_0319 | BVU_RS01625 | outer membrane efflux protein oprM precursor [Phocaeicola vulgatus ATCC 8482] | 2 | 3.25 | 8.5 | |||
| ABR38040.1 | BVU_0320 | BVU_RS01630 | hypothetical protein BVU_0320 [Phocaeicola vulgatus ATCC 8482] | 0 | 2.75 | 3.25 | |||
| ABR38045.1 | BVU_0325 | BVU_RS01655 | electron transfer flavoprotein beta-subunit [Phocaeicola vulgatus ATCC 8482] | 7 | 15.75 | 14.5 | |||
| ABR38046.1 | BVU_0326 | BVU_RS01660 | electron transfer flavoprotein alpha-subunit [Phocaeicola vulgatus ATCC 8482] | 1.25 | 1.75 | 0 | |||
| ABR38048.1 | BVU_0328 | BVU_RS01670 | acyl-CoA dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 8.25 | 7 | 3.5 | |||
| ABR38049.1 | BVU_0329 | BVU_RS01675 | putative histidine decarboxylase [Phocaeicola vulgatus ATCC 8482] | 0 | 4.75 | 6 | |||
| ABR38050.1 | BVU_0330 | BVU_RS01680 | putative phenylacetic acid degradation protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0.75 | |||
| ABR38051.1 | BVU_0331 | BVU_RS01685 | putative DNA mismatch repair protein [Phocaeicola vulgatus ATCC 8482] | 0 | 1 | 1.25 | |||
| ABR38060.1 | BVU_0340 | BVU_RS01735 | putative oxidoreductase [Phocaeicola vulgatus ATCC 8482] | 8.5 | 8.25 | 6 | |||
| ABR38064.1 | BVU_0345 | BVU_RS01760 | 60 kDa chaperonin [Phocaeicola vulgatus ATCC 8482] | 46.25 | 82.75 | 73 | |||
| ABR38065.1 | BVU_0346 | BVU_RS01765 | 10 kDa chaperonin [Phocaeicola vulgatus ATCC 8482] | 21.75 | 31.5 | 36.75 | |||
| ABR38070.1 | BVU_0351 | BVU_RS01790 | histidyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482] | 5.75 | 7 | 7 | |||
| ABR38080.1 | BVU_0361 | BVU_RS01845 | 3,4-dihydroxy-2-butanone 4-phosphate synthase [Phocaeicola vulgatus ATCC 8482] | 3.5 | 2.5 | 2.25 | |||
| ABR38092.1 | BVU_0373 | BVU_RS01905 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 9 | 14 | 15.75 | |||
| ABR38093.1 | BVU_0374 | BVU_RS01910 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 3.25 | 2 | 4 | |||
| ABR38094.1 | BVU_0375 | BVU_RS01915 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 2.25 | 1.25 | 2 | |||
| ABR38096.1 | BVU_0377 | BVU_RS01920 | peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Phocaeicola vulgatus ATCC 8482] | 0 | 2 | 0 | |||
| ABR38099.1 | BVU_0380 | BVU_RS01935 | two-component system sensor histidine kinase, with response regulator receiver domain [Phocaeicola vulgatus ATCC 8482] | 2.75 | 0 | 0 | |||
| ABR38103.1 | BVU_0384 | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase [Phocaeicola vulgatus ATCC 8482] | 20 | 23.75 | 27.75 | |||
| ABR38113.1 | BVU_0395 | BVU_RS02010 | hypothetical protein BVU_0395 [Phocaeicola vulgatus ATCC 8482] | 10 | 4.5 | 5.5 | |||
| ABR38120.1 | BVU_0402 | BVU_RS02055 | putative cysteine synthase [Phocaeicola vulgatus ATCC 8482] | 0 | 1.5 | 2.75 | |||
| ABR38123.1 | BVU_0408 | BVU_RS02085 | tryptophanyl-tRNA synthetase [Phocaeicola vulgatus ATCC 8482] | 3.25 | 2.25 | 0 | |||
| ABR38124.1 | BVU_0409 | BVU_RS02090 | hypothetical protein BVU_0409 [Phocaeicola vulgatus ATCC 8482] | 19 | 7.5 | 8.5 | |||
| ABR38125.1 | BVU_0410 | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase [Phocaeicola vulgatus ATCC 8482] | 83.75 | 29 | 4.75 | |||
| ABR38127.1 | BVU_0412 | BVU_RS02105 | putative protein disulfide isomerase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0.75 | |||
| ABR38129.1 | BVU_0414 | BVU_RS02115 | major outer membrane protein OmpA [Phocaeicola vulgatus ATCC 8482] | 417.25 | 912.25 | 1338.25 | |||
| ABR38135.1 | BVU_0420 | BVU_RS02145 | CysQ, sulfite synthesis pathway protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0.75 | 0 | |||
| ABR38136.1 | BVU_0421 | BVU_RS02150 | conserved hypothetical exported protein [Phocaeicola vulgatus ATCC 8482] | 2.5 | 1.5 | 1.25 | |||
| ABR38137.1 | BVU_0422 | BVU_RS02155 | DNA mismatch repair protein mutL [Phocaeicola vulgatus ATCC 8482] | 0 | 3 | 4.5 | |||
| ABR38138.1 | BVU_0423 | BVU_RS02160 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 3 | |||
| ABR38140.1 | BVU_0425 | BVU_RS02170 | peptidyl-prolyl cis-trans isomerase [Phocaeicola vulgatus ATCC 8482] | 7.75 | 9 | 6.75 | |||
| ABR38141.1 | BVU_0426 | BVU_RS02175 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 5 | 0.75 | 0 | |||
| ABR38143.1 | BVU_0428 | BVU_RS02185 | inosine-5'-monophosphate dehydrogenase [Phocaeicola vulgatus ATCC 8482] | 25 | 28.75 | 28.75 | |||
| ABR38157.1 | BVU_0442 | BVU_RS02265 | ATP-dependent DNA helicase recQ [Phocaeicola vulgatus ATCC 8482] | 9 | 12 | 4.25 | |||
| ABR38158.1 | BVU_0443 | BVU_RS02270 | ATP-dependent Clp protease ATP-binding subunit [Phocaeicola vulgatus ATCC 8482] | 3.5 | 4.5 | 3.5 |
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| Name | Locus tag | Function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
| glycine biosynthesis I | |||||||||
| GlyA | BVU_RS16795 | serine hydroxymethyltransferase | 7 | 18 | 18 | ||||
| glycine biosynthesis II | |||||||||
| GcvP | BVU_RS15125 | glycine dehydrogenase | 0 | 2 | 0 | ||||
| L-alanine biosynthesis I | |||||||||
| - | BVU_RS06885 | cysteine desulfurase | 0 | 0 | 1 | ||||
| L-arginine biosynthesis (via L-ornithine) | |||||||||
| ArgB | - | - | - | - | - | ||||
| ArgB | BVU_RS06775 | putative acetylglutamate kinase | 0 | 0 | 1 | ||||
| - | BVU_RS03000 | N-acetyl-gamma-glutamyl-phosphate reductase | 3 | 2 | 2 | ||||
| - | BVU_RS02995 | acetylornithine aminotransferase | 3 | 4 | 5 | ||||
| - | BVU_RS07505 | - | - | - | - | ||||
| - | BVU_RS20030 | carbamyl phosphate synthetase | 28 | 13 | 3 | ||||
| - | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2 | 5 | 4 | ||||
| - | BVU_RS20255 | - | - | - | - | ||||
| - | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
| - | BVU_RS02805 | ornithine carbamoyltransferase | 3 | 3 | 4 | ||||
| - | BVU_RS03005 | argininosuccinate synthase | 6 | 9 | 7 | ||||
| ArgH | - | - | - | - | - | ||||
| L-asparagine biosynthesis I | |||||||||
| AsnB | - | asparagine synthase B | - | - | - | ||||
| L-asparagine biosynthesis II | |||||||||
| - | BVU_RS20790 | asparagine synthase A | 6 | 6 | 0 | ||||
| L-aspartate biosynthesis | |||||||||
| - | BVU_RS11395 | aspartate 4-decarboxylase | 0 | 0 | 1 | ||||
| L-cystein biosynthesis I | |||||||||
| - | BVU_RS05520 | serine acetyltransferase | 0 | 0 | 1 | ||||
| CysK | BVU_RS02055 | cysteine synthase A | 0 | 2 | 3 | ||||
| L-cystein biosynthesis IV | |||||||||
| - | BVU_RS05985 | S-adenosylmethionine synthase | 3 | 3 | 3 | ||||
| - | BVU_RS07105 | 2.1.1.- / S-adenosyl-methyltransferase | 0 | 0 | 2 | ||||
| - | BVU_RS04530 | S-adenosylhomocysteine nucleosidase | 1 | 2 | 1 | ||||
| - | BVU_RS04535 | S-ribosylhomocysteine lyase | 0 | 0 | 2 | ||||
| - | - | 4.2.1.22 | - | - | - | ||||
| - | BVU_RS10335 | 2.5.1.48 / homoserine O-succinyltransferase | 0 | 0 | 1 | ||||
| L-glutamate biosynthesis II | |||||||||
| - | BVU_RS01250 | glutamate dehydrogenase | 77 | 66 | 43 | ||||
| - | BVU_RS01255 | glutamate dehydrogenase | 23 | 17 | 10 | ||||
| L-glutamate biosynthesis III | |||||||||
| BVU_RS01275 | glutamate dehydrogenase | 0 | 10 | 12 | |||||
| - | BVU_RS01250 | glutamate dehydrogenase | 77 | 66 | 43 | ||||
| L-glutamine biosynthesis I | |||||||||
| - | BVU_RS17720 | glutamine synthetase | 0 | 1 | 0 | ||||
| - | BVU_RS17970 | glutamine synthetase | 10 | 13 | 8 | ||||
| - | BVU_RS20050 | glutamine synthetase | - | - | - | ||||
| L-histidine biosynthesis | |||||||||
| - | BVU_RS11880 | ATP phosphoribosyltransferase | 0 | 1 | 0 | ||||
| - | BVU_RS19330 | - | - | - | - | ||||
| HisA | BVU_RS19320 | 5.3.1.16 | 4 | 3 | 4 | ||||
| HisH | BVU_RS20510 | 4.3.2.- | 1 | 0 | 0 | ||||
| HisB | BVU_RS11895 | histidinol-phosphate aminotransferase | - | - | - | ||||
| HisC | BVU_RS11890 | 2.6.1.9 | - | - | - | ||||
| - | BVU_RS17605 | - | - | - | |||||
| HisD | BVU_RS11885 | histidinal dehydrogenase | - | - | - | ||||
| L-homocysteine biosynthesis | |||||||||
| - | BVU_RS10335 | homoserine O-succinyltransferase | 0 | 0 | 1 | ||||
| - | BVU_RS03900 | O-acetylhomoserine (thiol)-lyase | 4 | 2 | 1 | ||||
| - | BVU_RS13630 | O-acetylhomoserine (thiol)-lyase | 7 | 4 | 7 | ||||
| L-homoserine biosynthesis | |||||||||
| - | BVU_RS10375 | putative aspartokinase I-homoserine dehydrogenase | 26 | 21 | 9 | ||||
| - | BVU_RS19340 | aspartokinase | 13 | 11 | 8 | ||||
| - | BVU_RS01045 | aspartate-semialdehyde dehydrogenase | 22 | 33 | 31 | ||||
| L-isoleucine biosynthesis I | |||||||||
| - | BVU_RS19515 | threonine ammonia-lyase | - | - | - | ||||
| IlvB | BVU_RS12865 | acetolactate synthase large subunit | 2 | 0 | 0 | ||||
| IlvN | BVU_RS12870 | acetohydroxyacid synthase small subunit | 9 | 13 | 14 | ||||
| IlvC | BVU_RS12880 | ketol-acid reductoisomerase | 22 | 24 | 26 | ||||
| - | BVU_RS12860 | dihydroxy-acid dehydratase | 6 | 6 | 5 | ||||
| - | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
| L-isoleucine biosynthesis IV | |||||||||
| - | BVU_RS02915 | propanoate:CoA ligase (AMP-forming) | - | - | - | ||||
| - | BVU_RS00045 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| - | BVU_RS19410 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| - | BVU_RS15255 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| - | BVU_RS07510 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| - | BVU_RS04995 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| - | BVU_RS04960 | Long-chain-fatty-acid--CoA ligase | - | - | - | ||||
| IlvB | BVU_RS12865 | acetolactate synthase large subunit | 2 | 0 | 0 | ||||
| IlvN | BVU_RS12870 | acetohydroxyacid synthase small subunit | 9 | 13 | 14 | ||||
| IlvC | BVU_RS12880 | ketol-acid reductoisomerase | 22 | 24 | 26 | ||||
| - | BVU_RS12860 | dihydroxy-acid dehydratase | 6 | 6 | 5 | ||||
| - | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
| L-leucine biosynthesis | |||||||||
| - | BVU_RS10160 | 2-isopropylmalate synthase | 9 | 11 | 8 | ||||
| - | BVU_RS10175 | 2-isopropylmalate synthase | 0 | 1 | 0 | ||||
| LeuC | BVU_RS10165 | 3-isopropylmalate dehydratase large subunit | 7 | 10 | 6 | ||||
| LeuD | BVU_RS10170 | 3-isopropylmalate dehydratase small subunit | 1 | 0 | 0 | ||||
| LeuB | BVU_RS10180 | 3-isopropylmalate dehydrogenase | 3 | 3 | 2 | ||||
| - | BVU_RS01360 | branched-chain amino acid aminotransferase | 7 | 24 | 18 | ||||
| L-lysine biosynthesis III | |||||||||
| - | BVU_RS10375 | putative aspartokinase I-homoserine dehydrogenase | 26 | 21 | 6 | ||||
| - | BVU_RS19340 | aspartokinase | 13 | 11 | 8 | ||||
| - | BVU_RS01045 | aspartate-semialdehyde dehydrogenase | 22 | 33 | 31 | ||||
| - | BVU_RS16620 | putative dihydrodipicolinate synthase | 1 | 4 | 3 | ||||
| DapB | - | - | - | - | - | ||||
| - | BVU_RS08435 | putative oxidoreductase | 22 | 40 | 68 | ||||
| LysA | BVU_RS19345 | diaminopimelate decarboxylase | 2 | 3 | 1 | ||||
| - | BVU_RS20260 | - | - | - | - | ||||
| L-lysine biosynthesis VI |
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| Name | Locus tag | function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
| 5-aminoimidazole ribonucleotide biosynthesis II | |||||||||
| - | BVU_RS04370 | - | - | - | - | ||||
| - | BVU_RS19210 | - | - | - | - | ||||
| - | BVU_RS20040 | - | - | - | - | ||||
| - | BVU_RS05540 | phosphoribosylamine--glycine ligase | 3 | 3 | 3 | ||||
| - | BVU_RS13930 | phosphoribosylglycinamide formyltransferase 2 | 1 | 6 | 5 | ||||
| - | BVU_RS00400 | putative phosphoribosylformylglycinamidine synthase | 17 | 10 | 1 | ||||
| - | BVU_RS00475 | putative phosphoribosylformylglycinamidine cyclo-ligase | 1 | 2 | 1 | ||||
| adenine and adenosine salvage I | |||||||||
| - | BVU_RS08145 | purine nucleoside phosphorylase I | 0 | 4 | 7 | ||||
| - | BVU_RS06135 | adenine phosphoribosyltransferase | 1 | 1 | 2 | ||||
| adenine and adenosine salvage IV | |||||||||
| - | BVU_RS04245 | - | - | - | - | ||||
| adenosine deoxyriboculeotide de novo synthesis | |||||||||
| - | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
| - | BVU_RS15620 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| CMP phosphorylation | |||||||||
| - | BVU_RS09815 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| guanine and guanosin salvage | |||||||||
| - | BVU_RS08145 | purine nucleoside phosphorylase I | 0 | 4 | 7 | ||||
| Hpt | BVU_RS08545 | putative hypoxanthine guanine phosphoribosyltransferase | 0 | 3 | 5 | ||||
| Xpt | BVU_RS12750 | xanthine phosphoribosyltransferase | 1 | 0 | 0 | ||||
| guanosine deoxyriboculeotide de novo synthesis | |||||||||
| - | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
| - | BVU_RS15620 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| pyrimidine deoxyribonucleosides salvage | |||||||||
| - | BVU_RS09765 | cytidine/deoxycytidylate deaminase | 0 | 2 | 3 | ||||
| - | BVU_RS09305 | - | - | - | - | ||||
| - | BVU_RS09885 | putative thymidylate synthase B | 1 | 0 | 1 | ||||
| - | BVU_RS09305 | - | - | - | - | ||||
| - | - | 2.7.1.74 | - | - | - | ||||
| pyrimidine deoxyribonucleostide phosphorylation | |||||||||
| - | BVU_RS09815 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| - | - | 2.7.4.9/12/13; | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| pyrimidine deoxyriboculeotide de novo synthesis | |||||||||
| - | - | 3.6.1.15; | - | - | - | ||||
| BVU_RS00015 | putative ribonucleoside reductase | 8 | 5.75 | 2 | |||||
| - | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
| - | BVU_RS15620 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| - | BVU_RS15615 | ribonucleoside-diphosphate reductase subunit B | 0 | 0 | 1 | ||||
| - | BVU_RS15620 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| - | BVU_RS07130 | deoxyuridine 5'-triphosphate nucleotidohydrolase | 1 | 0 | 1 | ||||
| - | BVU_RS01730 | - | - | - | - | ||||
| - | BVU_RS12965 | - | - | - | - | ||||
| - | BVU_RS09885 | putative thymidylate synthase B | 1 | 0 | 1 | ||||
| - | - | 2.7.4.9/12/13; | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| pyrimidine nucleobases salvage I | |||||||||
| - | BVU_RS04955 | - | - | - | - | ||||
| - | BVU_RS04990 | - | - | - | - | ||||
| pyrimidine ribonucleosides salvage I | |||||||||
| BVU_RS16775 | cytidine/deoxycytidylate deaminase | 0 | 2 | 3 | |||||
| - | BVU_RS11865 | uridine kinase | 0 | 0 | 1 | ||||
| - | - | 2.7.1.213; | - | - | - | ||||
| UMP biosynthesis II | |||||||||
| - | BVU_RS20030 | carbamoyl phosphate synthetase | 28.25 | 13.25 | 3.25 | ||||
| - | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2.25 | 5.25 | 4.25 | ||||
| - | BVU_RS20255 | - | - | - | - | ||||
| - | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
| PyrB | - | aspartate carbamoyltransferase catalytic chain | 0 | 2 | 0 | ||||
| - | BVU_RS16780 | aspartate carbamoyltransferase regulatory chain | 1 | 2 | 3 | ||||
| - | BVU_RS11365 | dihydroorotase | 0 | 0 | 1 | ||||
| - | BVU_RS19405 | putative dihydroorotate dehydrogenase | 0 | 3 | 2 | ||||
| - | BVU_RS04365 | orotate phosphoribosyltransferase | 13 | 36 | 48 | ||||
| PyrF | BVU_RS00485 | orotidine 5'-phosphate decarboxylase | 0 | 0 | 1.5 | ||||
| UMP biosynthesis III | |||||||||
| - | BVU_RS20030 | carbamyl phosphate synthetase | 28.25 | 13.25 | 3.25 | ||||
| - | BVU_RS20035 | glutamine-hydrolyzing carbamoyl phosphate synthetase III | 2.25 | 5.25 | 4.25 | ||||
| - | BVU_RS20255 | - | - | - | - | ||||
| - | BVU_RS02095 | glutamine-dependent carbamyl phosphate synthetase | 84 | 29 | 5 | ||||
| PyrB | BVU_RS16775 | aspartate carbamoyltransferase catalytic chain | 0 | 2 | 0 | ||||
| - | BVU_RS16780 | aspartate carbamoyltransferase regulatory chain | 1 | 2 | 3 | ||||
| - | BVU_RS11365 | dihydroorotase | 0 | 0 | 1 | ||||
| - | BVU_RS16640 | - | - | - | - | ||||
| - | BVU_RS04365 | orotate phosphoribosyltransferase | 13 | 36 | 48 | ||||
| PyrF | BVU_RS00485 | orotidine 5'-phosphate decarboxylase | 0 | 0 | 1.5 | ||||
| UTP and CTP de novo biosynthesis | |||||||||
| - | BVU_RS09490 | uridylate kinase | 1 | 1 | 1 | ||||
| - | BVU_RS09815 | - | - | - | - | ||||
| - | BVU_RS02410 | nucleoside diphosphate kinase | 0 | 0 | 4 | ||||
| - | BVU_RS16855 | CTP synthase | 9.5 | 8.25 | 3.25 |
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| Name | Locustag | function/EC No. | 1/2ODmax | ODmax | ODstat | ||||
| fatty acid biosynthesis initiation I | |||||||||
| AccC | - | - | - | - | - | ||||
| FabD | BVU_RS19990 | malonyl CoA-acyl carrier protein transacylase | 5 | 9 | 6 | ||||
| - | BVU_RS02315 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 12 | 6 | 2 | ||||
| fatty acid elongation -- saturation | |||||||||
| - | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
| FabG | - | - | - | - | |||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| FabG | BVU_RS10065 | enoyl-[acyl-carrier-protein] reductase | 10 | 15 | 20 | ||||
| FabG | - | - | - | - | - | ||||
| - | BVU_RS05130 | - | - | - | - | ||||
| palmitate biosynthesis II | |||||||||
| - | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
| FabG | - | - | - | - | |||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| FabG | - | - | - | - | - | ||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS12875 | - | - | - | - | ||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS12875 | - | - | - | - | ||||
| - | BVU_RS00045 | - | - | - | - | ||||
| - | BVU_RS19410 | - | - | - | - | ||||
| - | BVU_RS15255 | - | - | - | - | ||||
| - | BVU_RS07510 | - | - | - | - | ||||
| lipid IVA biosynthesis | |||||||||
| - | BVU_RS00505 | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | 0 | 1.75 | 3.5 | ||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| - | BVU_RS00495 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | 1 | 2.25 | 0.75 | ||||
| - | BVU_RS15065 | - | - | - | - | ||||
| - | BVU_RS02680 | - | - | - | - | ||||
| LpxB | BVU_RS09710 | - | - | - | - | ||||
| LpxK | BVU_RS08150 | - | - | - | - | ||||
| palmitoleate biosynthesis I | |||||||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| FabG | - | - | - | - | |||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS12875 | - | - | - | - | ||||
| CDP-diacylglycerol biosynthesis I | |||||||||
| - | BVU_RS02595 | - | - | - | - | ||||
| - | - | 2.3.1.15; | - | - | - | ||||
| - | BVU_RS11350 | - | - | - | - | ||||
| - | BVU_RS09720 | - | - | - | - | ||||
| phophatidylethanolamine biosynthesis I | |||||||||
| - | BVU_RS09540 | - | - | - | - | ||||
| - | BVU_RS09545 | phosphatidylserine decarboxylase | 0.75 | 0 | 0 | ||||
| gondoate biosynthesis I (anaerobic) | |||||||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| FabG | - | - | - | - | |||||
| stearate biosynthesis II | |||||||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS01955 | 3-oxoacyl-[acyl-carrier protein] reductase | 20 | 24 | 28 | ||||
| - | BVU_RS00500 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase | 33 | 15 | 8 | ||||
| FabG | - | - | - | - | - | ||||
| - | BVU_RS05130 | - | - | - | - | ||||
| - | BVU_RS12875 | - | - | - | - | ||||
| - | BVU_RS00045 | - | - | - | - | ||||
| - | BVU_RS19410 | - | - | - | - | ||||
| - | BVU_RS15255 | - | - | - | - | ||||
| - | BVU_RS07510 | - | - | - | - | ||||
| peptidoglycan biosynthesis I | |||||||||
| MurA | - | - | - | - | - | ||||
| - | BVU_RS11270 | - | - | - | - | ||||
| - | BVU_RS07065 | - | - | - | - | ||||
| Murl | - | - | - | - | - | ||||
| MurD | - | - | - | - | - | ||||
| - | BVU_RS07090 | - | - | - | - | ||||
| - | BVU_RS02785 | D-alanine--D-alanine ligase | 0 | 0.75 | 0 | ||||
| - | BVU_RS08970 | - | - | - | - | ||||
| - | BVU_RS02365 | - | - | - | - | ||||
| MraY | - | 2.7.8.13; | - | - | - | ||||
| MurG | - | - | - | - | - |
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| Name | average 1/2ODmax | average ODmax | average ODstat | |||||||||||||||||||||
| F23-30 | ||||||||||||||||||||||||
| 3,6-dimethyl-2,5-piperazinedione | 8265378.743 | 1.099494342E7 | 1.384175322E7 | |||||||||||||||||||||
| (4-hydroxyphenyl)acetate | 0 | 1420991.782 | 4245243.065 | |||||||||||||||||||||
| adenosine | 1.914616041E8 | 2.049224602E8 | 4.368890932E7 | |||||||||||||||||||||
| AMP | 0 | 2.542298812E7 | 0 | |||||||||||||||||||||
| alanine | 3.048153434E8 | 1023598628 | 4.595991406E8 | |||||||||||||||||||||
| beta-Alanine | 1.076268625E7 | 1.472702677E7 | 1.153525451E7 | |||||||||||||||||||||
| arabinose | 7.267107188E7 | 5.558992709E7 | 0 | |||||||||||||||||||||
| asparagine | 9194929.216 | 1.065020677E8 | 4.63419194E7 | |||||||||||||||||||||
| aspartate | 1336480732 | 2.561961123E9 | 1979001674 | |||||||||||||||||||||
| N-acetyl-aspartate | 1.430374177E7 | 1.358601966E7 | 1.834177997E7 | |||||||||||||||||||||
| 4-hydroxybutanoate | 4341238.489 | 1.611925834E7 | 3.671945556E7 | |||||||||||||||||||||
| citraconic acid | 3044486.818 | 2.246157863E7 | 3.030884869E7 | |||||||||||||||||||||
| citrate | 2.312309536E7 | 137330468 | 8.736149751E7 | |||||||||||||||||||||
| cytosine | 2.809813669E7 | 8.62736557E7 | 3.474310703E7 | |||||||||||||||||||||
| erythritol | 5054322.738 | 1.778982275E7 | 1.638248006E7 | |||||||||||||||||||||
| erythronic acid | 2.272937928E7 | 3.634991079E7 | 2.688512397E7 | |||||||||||||||||||||
| erythrose | 2.787263181E7 | 5.955155986E7 | 6765894.403 | |||||||||||||||||||||
| ethanolamine | 4.969040726E7 | 1.530971721E8 | 3.033750008E8 | |||||||||||||||||||||
| ethanolaminephosphate | 2.546777747E7 | 2.813185905E7 | 9443448.536 | |||||||||||||||||||||
| fructose | 1.850946281E8 | 1.257242206E8 | 0 | |||||||||||||||||||||
| fructose-6-phosphate | 2.849009979E8 | 1.242458087E8 | 0 | |||||||||||||||||||||
| fumarate | 2.404458386E8 | 5.637002336E8 | 6.521516803E8 | |||||||||||||||||||||
| gluconic-acid | 2.568004851E8 | 1.181679281E8 | 9550974.311 | |||||||||||||||||||||
| N-acetyl-glucosamine | 9768310.857 | 7213146.982 | 0 | |||||||||||||||||||||
| glucose-6-phosphate | 4.067897086E8 | 1.828808347E8 | 0 | |||||||||||||||||||||
| glutamate | 1340216244 | 6.658121568E9 | 1169145644 | |||||||||||||||||||||
| glutamine | 2.056023878E8 | 4.190071894E8 | 2.240359272E8 | |||||||||||||||||||||
| 2-hydroxy-glutarate | 0 | 3.294905939E7 | 3.590857646E7 | |||||||||||||||||||||
| glyceraldehyde | 7750331.635 | 2.298763835E7 | 1.335637885E7 | |||||||||||||||||||||
| glycerate | 3.755884754E8 | 2.740662649E8 | 1.147235845E8 | |||||||||||||||||||||
| 2-phosphoglycerate | 0 | 4572553.126 | 0 | |||||||||||||||||||||
| 3-phosphoglycerate | 2.302342533E7 | 3.439023367E7 | 5846386.359 | |||||||||||||||||||||
| glycerol | 4.661167241E7 | 6.570150232E7 | 6.856078056E7 | |||||||||||||||||||||
| glycerol-3-phosphate | 1.041908498E7 | 1.718752623E8 | 1.772606967E8 | |||||||||||||||||||||
| glycine | 6.209431422E8 | 2057670347 | 4.592510717E8 | |||||||||||||||||||||
| glycolate | 1.405411682E7 | 2.059001147E7 | 1.808473331E7 | |||||||||||||||||||||
| homoserine | 3.335082045E8 | 3.591716395E8 | 1.399917335E7 | |||||||||||||||||||||
| N-2-oxocaproyl-homoserine lactone | 1.517760032E7 | 1.867238667E7 | 2.293308736E7 | |||||||||||||||||||||
| N-2-oxooctanyol-DL-homoserine lactone | 0 | 0 | 11635.331750000001 | |||||||||||||||||||||
| N-hexanoyl-homoserine lactone | 0 | 0 | 3740822.157 | |||||||||||||||||||||
| homoserine-lactone | 1.809613475E7 | 1.95027542E7 | 2.570292888E7 | |||||||||||||||||||||
| indole-3-acetaldehyde | 4383476.133 | 9365954 | 8288216.327 | |||||||||||||||||||||
| indole-3-acetic acid | 0 | 4.691573849E7 | 7820113.983 | |||||||||||||||||||||
| indole-3-lactate | 2186880.9 | 2630974.483 | 2594399.649 | |||||||||||||||||||||
| myoinositol-2-phosphate | 1.775189535E7 | 2.390872067E7 | 5423904.234 | |||||||||||||||||||||
| isoleucine | 1.374542193E8 | 3.199794331E8 | 1.217658453E8 | |||||||||||||||||||||
| lactate | 4.274263196E8 | 8.536903754E8 | 9.656382479E8 | |||||||||||||||||||||
| leucine | 5.790712841E8 | 1439535415 | 5.516541295E8 | |||||||||||||||||||||
| maleamate | 4192487.17 | 5795711.583 | 5199904.97 | |||||||||||||||||||||
| malate | 3.923954001E8 | 848322731 | 8.097098594E8 | |||||||||||||||||||||
| 2-isopropylmalic acid | 0 | 2.890969401E7 | 0 | |||||||||||||||||||||
| 2-methyl-malate | 6.080885221E7 | 1.079938159E8 | 4.788533355E7 | |||||||||||||||||||||
| maltose | 1.326685341E8 | 133750122 | 1800785.279 | |||||||||||||||||||||
| 3,4-dihydroxy-mandelic acid | 8064132.172 | 8749595.731 | 1.079897095E7 | |||||||||||||||||||||
| mannose | 4.487437963E8 | 252336952 | 1.393508464E7 | |||||||||||||||||||||
| mannose-6-phosphate | 9.636200797E7 | 5.955190153E7 | 0 | |||||||||||||||||||||
| methionine | 2034513.532 | 7.628279346E7 | 2.730399671E8 | |||||||||||||||||||||
| Nicotinamide | 1.258987794E8 | 501164642 | 3.260022908E8 | |||||||||||||||||||||
| nicotinic acid | 1.170017169E8 | 2.097302329E8 | 4.873414118E8 | |||||||||||||||||||||
| phenylacetate | 2956646.363 | 4456889.651 | 9633215.127 | |||||||||||||||||||||
| phenylalanine | 4.388546669E8 | 4.935537981E8 | 1.789371058E8 | |||||||||||||||||||||
| phenylpyruvate | 2956401.783 | 3496928.418 | 2585520.354 | |||||||||||||||||||||
| phosphoenolpyruvate | 7904362.188 | 1.402691499E7 | 5128633.264 | |||||||||||||||||||||
| proline | 2.666568981E8 | 1511423646 | 1605577602 | |||||||||||||||||||||
| 2-amino-2-methyl-3-hydroxy-propanoate | 0 | 0 | 3.371460358E7 | |||||||||||||||||||||
| putrescine | 0 | 1.005640698E7 | 1.171328886E7 | |||||||||||||||||||||
| pyroglutamate | 2.540546723E9 | 4.104969694E9 | 3.284833895E9 | |||||||||||||||||||||
| pyrophosphate | 0 | 9.711275107E7 | 0 | |||||||||||||||||||||
| pyruvate | 5.764449038E7 | 1.054069723E8 | 4.67062416E7 | |||||||||||||||||||||
| 3-hydroxypyruvate | 2.813426578E7 | 3.874564615E7 | 4.709903788E7 | |||||||||||||||||||||
| rhamnose | 5467552.28 | 7287586.92 | 0 | |||||||||||||||||||||
| ribitol | 1000000000 | 1000000000 | 1000000000 | |||||||||||||||||||||
| ribose | 694367707 | 5.328332125E8 | 4.384904984E8 | |||||||||||||||||||||
| sedoheptulose-7-phosphate | 5.917838268E7 | 7.411755046E7 | 3993024.476 | |||||||||||||||||||||
| serine | 1276441786 | 3.335129505E9 | 7.695622812E8 | |||||||||||||||||||||
| cycloserine | 5.084750116E7 | 2.600599198E8 | 8.100619203E7 | |||||||||||||||||||||
| N-acetyl-serine | 1.059336746E8 | 1.842237611E8 | 0 | |||||||||||||||||||||
| 3-dehydroshikimate | 2915323.859 | 3497219.62 | 1688258.611 | |||||||||||||||||||||
| spermine | 3541465.43 | 4704480.265 | 3252199.329 | |||||||||||||||||||||
| succinate | 2.657480135E9 | 4.484433305E9 | 5.284361116E9 | |||||||||||||||||||||
| threonine | 1749332247 | 3.39003851E9 | 8.915184433E7 | |||||||||||||||||||||
| threose | 3516783.548 | 4772561.199 | 5178304.532 | |||||||||||||||||||||
| thymine | 589083380 | 6.178797086E8 | 2.814467823E8 | |||||||||||||||||||||
| tryptophan | 2539672.872 | 4857143.382 | 6075927.328 | |||||||||||||||||||||
| tyrosine | 9.550352555E7 | 1.368401247E8 | 7.821043712E7 | |||||||||||||||||||||
| Unknown#1325.8-pin-mhe_007 | 2.746316097E7 | 3.831566682E7 | 3.146717502E7 | |||||||||||||||||||||
| Unknown#1366.59-ppu-cja_010 | 1.028040972E8 | 1.286606871E8 | 3.83307523E7 | |||||||||||||||||||||
| Unknown#1366.9-pin-mhe_011 | 0 | 0 | 5.100790519E7 | |||||||||||||||||||||
| Unknown#1392.1-pin-mhe_012 | 0 | 0 | 8.392893011E7 | |||||||||||||||||||||
| Uracil | 1702329403 | 2117311135 | 1641307740 | |||||||||||||||||||||
| uridine | 1.474320764E7 | 8750848.652 | 0 | |||||||||||||||||||||
| valine | 9.230785067E8 | 2.592221665E9 | 3.434458049E8 | |||||||||||||||||||||
| xylitol | 2.239443265E7 | 0 | 0 | |||||||||||||||||||||
| xylose | 1.166395907E7 | 1.05930369E7 | 3438379.921 | |||||||||||||||||||||
| xylulose | 7.952552253E7 | 7.546167784E7 | 0 | |||||||||||||||||||||
| xylulose-5-phosphate | 855942.3938 | 1592458.039 | 0 |
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| CoA | 1/2ODmax | ODmax | Odstat | |||||||||
| CoenzymeA | 4912868 | 4693358 | 4415376 | 4029986 | 7999299 | 5436994 | 5471682 | 7341028 | 3722929 | 3119229 | 3701465 | 3818397 |
| Acetyl-CoA | 58415094 | 60965398 | 63465947 | 60060491 | 45393976 | 31968886 | 35167580 | 45404304 | 44039022 | 39014335 | 41993660 | 38573573 |
| Propenoyl-CoA | 2135768 | 2095049 | 1494035 | 1733782 | 337249 | 305428 | 301575 | 250793 | 223376 | 182202 | 258149 | 281767 |
| Propanoyl-CoA | 5023647 | 5226892 | 4527377 | 4287440 | 1943418 | 2347079 | 1925851 | 2219608 | 7656282 | 5159891 | 6943862 | 6861228 |
| Butanoyl-CoA | 4776301 | 5393140 | 4026315 | 5894770 | 20097739 | 17224231 | 12407080 | 17225271 | 14975138 | 14403527 | 11433604 | 11987066 |
| Isobutanoyl-CoA | 4371966 | 4922817 | 4109338 | 4505565 | 15840788 | 14356691 | 11994533 | 13954118 | 8893864 | 8921627 | 6932793 | 9596689 |
| (S)-2-Methylbutanoyl-CoA | 9949737 | 10129657 | 8731578 | 8150428 | 15483160 | 15620341 | 18433654 | 20650339 | 44850423 | 36776164 | 32778771 | 48635322 |
| Isovaleryl-CoA | 4999600 | 4500310 | 3911202 | 3374602 | 25918635 | 19124343 | 20376423 | 23534793 | 55823717 | 35807178 | 53743495 | 46561363 |
| Pentanoyl-CoA | 824233 | 868427 | 721083 | 755892 | 1771268 | 1402055 | 1438430 | 1969274 | 5972812 | 6884757 | 6884792 | 7280826 |
| Malonyl-CoA | 177622 | 217814 | 177321 | 233897 | 732199 | 626023 | 648105 | 713322 | 871181 | 1022431 | 866700 | 887095 |
| Methylmalonyl-CoA | 5123649 | 4195843 | 3916541 | 3763798 | 2875768 | 1995122 | 2569047 | 1923211 | 9979938 | 7408454 | 9096165 | 10471671 |
| Succinyl-CoA | 21169812 | 17919356 | 22625778 | 14636368 | 19358027 | 22797158 | 14771345 | 17849154 | 31131938 | 26989307 | 33768034 | 33003571 |
| Cyclohexa-1,5-dienecarbonyl-CoA | 1227884 | 1306538 | 925570 | 1214402 | 2339858 | 2739259 | 2490548 | 2597333 | 7394661 | 5144411 | 8170709 | 7629941 |
| Cyclohex-1-ene-1-carboxyl-CoA | 221606 | 177166 | 155359 | 182230 | 1090067 | 856545 | 745147 | 857469 | 595135 | 746863 | 741959 | 566189 |
| Methylsuccinyl-CoA | 430019 | 486722 | 340381 | 425041 | 396548 | 429238 | 333357 | 396585 | 485835 | 408756 | 350739 | 325660 |
| C28H42N7O18P3S, similar to beta-(2-Furyl)propionyl-CoA | 1739194 | 1817161 | 1652515 | 1545113 | 1034390 | 1076613 | 1304001 | 1434617 | 605293 | 588617 | 823728 | 772815 |
| C29H41N8O17P3S, exact mass based | 1956558 | 1959717 | 1510641 | 1436500 | 11001764 | 9401792 | 8029753 | 10627222 | 9750493 | 8677756 | 9005034 | 11810337 |
| Phenylglyoxylyl-CoA | 81301 | 97570 | 84085 | 88380 | 883414 | 781849 | 817047 | 1053451 | 1346654 | 1350960 | 1368696 | 1943608 |
| C29H43N8O17P3S, similar to N-Methylanthraniloyl-CoA | 3621909 | 4315683 | 2862026 | 3731336 | 3989842 | 4396538 | 3225252 | 3857268 | 1260793 | 990580 | 1201589 | 1246272 |
| 2,3-Dihydro-2,3-dihydroxybenzoyl-CoA | 610018 | 585519 | 641224 | 594254 | 1103750 | 1019841 | 903896 | 818590 | 473518 | 456067 | 498651 | 496308 |
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| Name | average 1/2ODmax | average ODmax | average ODstat | ||||||
| (4-hydroxyphenyl)acetate | 0 | 0 | 9289.599772 | ||||||
| 1,6-anhydro-glucose | 13241.09054 | 21598.00354 | 5276.194721 | ||||||
| 1-O-methyl-alpha-glucopyranoside | 120221.2645 | 22595.36598 | 0 | ||||||
| 1-pyrroline-2-carboxylate | 11399.37926 | 12334.10381 | 12984.44374 | ||||||
| 2,4-dihydroxybutanoate | 23100.79123 | 17651.50354 | 17132.32856 | ||||||
| 2-amino-2-methylpropane-1,3-diol | 17292.52606 | 304397.5939 | 119436.4133 | ||||||
| 2-aminobutanoate | 13801.57337 | 64058.93625 | 18782.03809 | ||||||
| 2-aminoisobutanoate | 1846.437294 | 2522.104867 | 981.3441083 | ||||||
| 2-hydroxy-4-(methylthio)butanoate | 1062.234506 | 4951.057944 | 21931.4075 | ||||||
| 2-hydroxybutanoate | 0 | 21893.13429 | 20704.05855 | ||||||
| 2-hydroxy-glutarate | 9126.16993 | 93357.42608 | 124743.2806 | ||||||
| 2-hydroxyisocaproate | 0 | 6154.527856 | 7563.933773 | ||||||
| 2-isopropylmalic acid | 9318.271904 | 32305.2513 | 26006.79167 | ||||||
| 2-methyl-malate | 47322.16999 | 147337.0056 | 148228.6592 | ||||||
| 2-oxobutanoate | 1706.542423 | 5182.400179 | 1972.253655 | ||||||
| 2-oxoglutarate | 3825.152833 | 16351.44434 | 8373.118877 | ||||||
| 3,4-dihydroxybenzoate | 2154.914701 | 2729.888575 | 1818.869325 | ||||||
| 3-aminoisobutanoate | 51072.72964 | 53180.989 | 52068.8065 | ||||||
| 3-dehydroshikimate | 0 | 4274.800011 | 2519.69768 | ||||||
| 3-hydroxybenzoate | 1118.434005 | 1577.661383 | 1487.247318 | ||||||
| 3-hydroxyindole | 145483.7357 | 145062.1962 | 161133.4753 | ||||||
| 3-hydroxyisobutanoate | 1443.406185 | 2030.471884 | 4677.262604 | ||||||
| 3-hydroxyisovaleric acid | 0 | 0 | 13350.90751 | ||||||
| 4-hydroxybenzoate | 4347.213233 | 9265.616971 | 6439.181642 | ||||||
| 4-hydroxybutanoate | 8341.833798 | 57319.67342 | 130046.4036 | ||||||
| 4-hydroxyphenylacetonitrile | 1702.447467 | 1965.253942 | 2211.86605 | ||||||
| 4-oxobutanoate | 0 | 2897.024902 | 2276.482706 | ||||||
| 4-oxopentanoic acid | 12512.22651 | 14994.85326 | 15058.76188 | ||||||
| 6-deoxy-mannose | 115413.7129 | 40962.12844 | 1007.050309 | ||||||
| alanine | 186437.366 | 675858.5938 | 377179.5159 | ||||||
| aminomalonic acid | 0 | 32029.00758 | 30254.65806 | ||||||
| arabinonate | 2480.46599 | 2885.912754 | 826.9863153 | ||||||
| arabinono-1,4-lactone | 6041.827278 | 8305.663046 | 0 | ||||||
| arabinose | 113599.8842 | 18742.39801 | 0 | ||||||
| asparagine | 0 | 3974.843049 | 0 | ||||||
| aspartate | 0 | 22641.73173 | 0 | ||||||
| benzene-1,2,4-triol | 2685.662953 | 6543.742449 | 9444.725211 | ||||||
| benzoate | 164377.0865 | 214497.77 | 234102.4865 | ||||||
| beta-Alanine | 111004.0078 | 17010.72479 | 25348.08442 | ||||||
| butylamine | 2583.330356 | 7800.087292 | 3031.189135 | ||||||
| citraconic acid | 13291.46357 | 20733.4688 | 14481.70315 | ||||||
| citrate | 19032.68054 | 31779.28151 | 26073.8232 | ||||||
| cysteine | 0 | 8649.927068 | 7935.665552 | ||||||
| diethylene glycol | 114075.8286 | 126325.7524 | 147065.7096 | ||||||
| erythritol | 6432.784773 | 20202.39974 | 35682.00093 | ||||||
| erythronic acid | 17425.01564 | 52475.53757 | 36736.3588 | ||||||
| erythronic acid-1,4-lactone | 5212.858485 | 16058.7725 | 12997.351 | ||||||
| erythrose | 21921.41473 | 78241.62423 | 44883.12959 | ||||||
| ethanolamine | 30960.5817 | 139357.8415 | 274287.2696 | ||||||
| fructose | 518667.171 | 284286.21 | 3647.387377 | ||||||
| fumarate | 74158.3667 | 89377.55297 | 77311.96085 | ||||||
| galactose | 287798.7167 | 136190.6944 | 0 | ||||||
| gluconic-acid | 53450.97373 | 24254.20329 | 5112.018837 | ||||||
| glucose | 1401777.391 | 680722.0745 | 148902.9758 | ||||||
| glutamine | 96326.14762 | 126582.3145 | 142426.8809 | ||||||
| glyceraldehyde | 9937.889679 | 26075.91615 | 15092.50598 | ||||||
| glycerate | 38642.76494 | 138259.5499 | 57055.02788 | ||||||
| glycerol-3-phosphate | 0 | 2377.851981 | 1843.756899 | ||||||
| glycine | 25679.78888 | 117986.9177 | 76740.94961 | ||||||
| glycolate | 7575.441393 | 14218.2835 | 10748.57535 | ||||||
| hydrocinnamic acid | 18962.46781 | 28176.20618 | 28493.75941 | ||||||
| hydroquinone | 5964.373506 | 1497.075992 | 1384.895708 | ||||||
| hydroxylamine | 42642.97452 | 54994.37608 | 55226.30733 | ||||||
| indole-3-lactate | 0 | 510.5191295 | 568.7783619 | ||||||
| isocaproate | 0 | 5383.709628 | 3284.426331 | ||||||
| isoleucine | 16528.71098 | 38714.57974 | 18782.29433 | ||||||
| isomaltose* | 285.1419036 | 630.276348 | 0 | ||||||
| lactate | 782860.4662 | 994265.4398 | 1215024.733 | ||||||
| laminaribiose* | 3458.983938 | 8499.335859 | 606.5945435 | ||||||
| leucine | 0 | 54179.53124 | 24567.30548 | ||||||
| malate | 415601.0876 | 965945.4366 | 945762.7512 | ||||||
| maleate | 7494.438311 | 42037.55822 | 21269.74702 | ||||||
| malonamide | 313710.7895 | 438380.1751 | 386739.6702 | ||||||
| malonic acid | 0 | 1656.04694 | 1719.925459 | ||||||
| mannonic acid-1,4-lactone | 0 | 492.9970468 | 0 | ||||||
| mannose | 159580.4492 | 47561.44195 | 0 | ||||||
| mannosylglycerate | 8411.381146 | 0 | 0 | ||||||
| methyl 3,6-anhydro-alpha-galactopyranoside | 3513.663272 | 4304.23687 | 3661.989529 | ||||||
| myo-inositol | 0 | 850.0713329 | 0 | ||||||
| N-acetyl-galactosamine | 3671.443836 | 629.3391122 | 0 | ||||||
| N-acetyl-glucosamine | 4287.622265 | 1006.047384 | 0 | ||||||
| N-acetyl-phenylalanine | 0 | 0 | 972.2001417 | ||||||
| nicotinic acid | 21321.99894 | 26841.36041 | 121129.9429 | ||||||
| oxalate | 9393.353043 | 11625.98082 | 10514.72433 | ||||||
| phenylpyruvate | 2495.374715 | 4905.818014 | 4074.834533 | ||||||
| proline | 54337.72263 | 963555.2114 | 789359.9671 | ||||||
| propane-1,2-diol | 12926.23761 | 15962.30631 | 31277.14495 | ||||||
| propane-1,3-diol | 105286.998 | 53200.53431 | 0 | ||||||
| putrescine | 8087.277356 | 0 | 0 | ||||||
| pyridoxal | 0 | 1363.784526 | 519.1638029 | ||||||
| pyroglutamate | 51637.52579 | 282849.0538 | 157454.2446 | ||||||
| pyrrole-2-carboxylate | 6045.629836 | 12082.07825 | 8520.154384 | ||||||
| pyruvate | 126135.6008 | 41206.06283 | 13904.45386 | ||||||
| quinate | 1138.771335 | 1889.73512 | 1362.196213 | ||||||
| ribonate | 3637.443671 | 6401.706855 | 4352.95201 | ||||||
| ribose | 35320.99403 | 54534.9951 | 38510.98767 | ||||||
| shikimic acid | 0 | 130438.5169 | 74191.88895 | ||||||
| sorbitol | 7360.274366 | 0 | 0 | ||||||
| succinate | 2298.598083 | 2452304.88 | 2784346.948 |
