Selected Cell
Cell:
Value:
Outline
1P_vulgatus_ATCC_8482
2Pathways
3Transporter
4Sus
5CDW&TCC
6ATPcalculation
7Yieldcalculations
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Tab | Name | Contents | |||||||
1 | 1P_vulgatus_ATCC_8482 | Genome of P. vulgatus ATCC 8482 | |||||||
2 | 2Pathways | Enzyme of the specific pathways and respiration chain with peptide counts | |||||||
3 | 3Transporter | Genome based transporter with the specific peptide count | |||||||
4 | 4Sus | Sus-like system-related proteins and glycoside hydrolase family proteins | |||||||
5 | 5CDW&TCC | Cell dry weight and total cell count for all 14 substrates | |||||||
6 | 6ATPcalculation | ATP calculation exemplarily for ODmax | |||||||
7 | 7Yieldcalculations | Calculation of product yield and biomass yield based on CDW and TCC | |||||||
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BVU_RS22525 | <2244870 | >2245031 | BVU_RS22525 | histidine kinase | |||||||||
BVU_RS08885 | BVU_1748 | 2245014 | 2245256 | 80 | BVU_RS08885 | ATP-binding protein | |||||||
BVU_RS08890 | BVU_1749 | 2245258 | 2246484 | 408 | c | BVU_RS08890 | glycoside hydrolase family 88 protein | ||||||
BVU_RS08895 | BVU_1750 | 2246660 | 2248081 | 473 | c | BVU_RS08895 | NADH-quinone oxidoreductase subunit N | ||||||
BVU_RS08900 | BVU_1751 | 2248112 | 2249593 | 493 | c | BVU_RS08900 | NADH-quinone oxidoreductase subunit M | ||||||
BVU_RS08905 | BVU_1752 | 2249647 | 2251548 | 633 | c | nuoL | 7.1.1.2 | NADH-quinone oxidoreductase subunit L | |||||
BVU_RS08910 | BVU_1753 | 2251551 | 2251859 | 102 | c | nuoK | 1.6.5.11 | NADH-quinone oxidoreductase subunit NuoK | |||||
BVU_RS08915 | BVU_1754 | 2251865 | 2252368 | 167 | c | BVU_RS08915 | NADH-quinone oxidoreductase subunit J | ||||||
BVU_RS08920 | BVU_1755 | 2252384 | 2252836 | 150 | c | BVU_RS08920 | NADH-quinone oxidoreductase subunit I | ||||||
BVU_RS08925 | BVU_1756 | 2252836 | 2253912 | 358 | c | nuoH | 1.6.5.11 | NADH-quinone oxidoreductase subunit NuoH | |||||
BVU_RS08930 | BVU_1757 | 2254036 | 2255595 | 519 | c | BVU_RS08930 | 7.1.1.- | NADH-quinone oxidoreductase subunit D | |||||
BVU_RS08935 | BVU_1758 | 2255592 | 2256188 | 198 | c | BVU_RS08935 | 1.6.5.11 | NADH-quinone oxidoreductase subunit B | |||||
BVU_RS08940 | BVU_1759 | 2256179 | 2256529 | 116 | c | BVU_RS08940 | NADH-quinone oxidoreductase subunit A | ||||||
BVU_RS08945 | BVU_1760 | 2256633 | 2257010 | 125 | c | BVU_RS08945 | hypothetical protein | ||||||
BVU_RS08950 | BVU_1761 | 2257113 | 2258567 | 484 | c | BVU_RS08950 | TrkH family potassium uptake protein | ||||||
BVU_RS08955 | BVU_1762 | 2258567 | 2259907 | 446 | c | trkA | Trk system potassium transporter TrkA | ||||||
BVU_RS08960 | BVU_1763 | 2259920 | 2261818 | 632 | c | dxs | 2.2.1.7 | 1-deoxy-D-xylulose-5-phosphate synthase | |||||
BVU_RS08965 | BVU_1764 | 2261911 | 2262897 | 328 | BVU_RS08965 | GSCFA domain-containing protein | |||||||
BVU_RS08970 | BVU_1765 | 2262873 | 2265338 | 821 | BVU_RS08970 | bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase | |||||||
BVU_RS08975 | BVU_1766 | 2265428 | 2265991 | 187 | BVU_RS08975 | DUF4858 domain-containing protein | |||||||
BVU_RS08980 | BVU_1767 | 2266143 | 2267447 | 434 | c | BVU_RS08980 | glycosyl hydrolase family 28 protein | ||||||
BVU_RS08985 | BVU_1768 | 2267489 | 2270401 | 970 | c | BVU_RS08985 | DUF4981 domain-containing protein | ||||||
BVU_RS08990 | BVU_1769 | 2270654 | 2272438 | 594 | c | BVU_RS08990 | glycoside hydrolase family 28 protein | ||||||
BVU_RS08995 | BVU_1770 | 2272651 | 2273346 | 231 | BVU_RS08995 | SGNH/GDSL hydrolase family protein | |||||||
BVU_RS09000 | BVU_1771 | 2273550 | 2274983 | 477 | c | BVU_RS09000 | sulfatase | ||||||
BVU_RS09005 | BVU_1772 | 2274988 | 2276790 | 600 | c | BVU_RS09005 | RagB/SusD family nutrient uptake outer membrane protein | ||||||
BVU_RS09010 | BVU_1773 | 2276805 | 2280191 | 1128 | c | BVU_RS09010 | TonB-dependent receptor | ||||||
BVU_RS09015 | BVU_1774 | 2280445 | 2281458 | 337 | c | BVU_RS09015 | FecR family protein | ||||||
BVU_RS09020 | BVU_1775 | 2281603 | 2282169 | 188 | BVU_RS09020 | RNA polymerase sigma-70 factor | |||||||
BVU_RS09025 | BVU_1776 | 2282362 | 2283042 | 226 | c | BVU_RS09025 | HU family DNA-binding protein | ||||||
BVU_RS09030 | BVU_1777 | 2283371 | 2284768 | 465 | BVU_RS09030 | DUF3874 domain-containing protein | |||||||
BVU_RS21510 | 2284893 | 2285161 | 88.66666666666667 | BVU_RS21510 | DUF1573 domain-containing protein | ||||||||
BVU_RS09035 | BVU_1779 | 2285256 | 2285843 | 195 | BVU_RS09035 | RNA polymerase sigma-70 factor | |||||||
BVU_RS09040 | BVU_1780 | 2285962 | 2286906 | 314 | BVU_RS09040 | FecR domain-containing protein | |||||||
BVU_RS09045 | BVU_1781 | 2287062 | 2290610 | MMIEVKNLSFSYGKRKQKVFDDFSLALDKGSVYGLLGKNGTGKSTLLYLMTGLLRPQAGRVLYKGVDVSM | BVU_RS09045 | SusC/RagA family TonB-linked outer membrane protein | |||||||
BVU_RS09050 | BVU_1782 | 2290622 | 2292562 | RYPLTLQDMFLVPEEFALPSVSLKQYLKLNTPFYPNFSNELLSTCLRDFDMNEDIHLGELSMGQKKKAFM | BVU_RS09050 | RagB/SusD family nutrient uptake outer membrane protein | |||||||
BVU_RS09055 | BVU_1783 | 2292656 | 2293777 | CFALATNTSLLVMDEPSNGLDIPSKSQFRKVIASGMTDEKSVIISTHQVRDIDSLLDHVVIIDGTRVLLN | BVU_RS09055 | glycoside hydrolase family 88 protein | |||||||
BVU_RS09060 | BVU_1784 | 2293791 | 2295053 | ASVKTICDKVYFAEQGMNEPTDTALYVQPSVQGNSVIFPNTENEETNLNLEVLFNAMLAEREKMQTMFNK | BVU_RS09060 | DUF2264 domain-containing protein | |||||||
BVU_RS09065 | BVU_1785 | 2295065 | 2297635 | 856 | BVU_RS09065 | glycoside hydrolase family 2 protein | |||||||
BVU_RS09070 | BVU_1787 | 2297944 | 2300158 | 737.3333333333334 | BVU_RS09070 | glycoside hydrolase | |||||||
BVU_RS09075 | BVU_1788 | 2300310 | 2303096 | 928 | BVU_RS09075 | helix-turn-helix domain-containing protein | |||||||
BVU_RS09080 | BVU_1789 | 2303312 | 2304748 | 478 | aldA | 1.2.1.- | aldehyde dehydrogenase | ||||||
BVU_RS09085 | BVU_1790 | 2304934 | 2305938 | 334 | BVU_RS09085 | glycoside hydrolase family 43 protein | |||||||
BVU_RS09090 | BVU_1791 | 2306008 | 2307471 | 487 | BVU_RS09090 | glycoside hydrolase family 140 protein | |||||||
BVU_RS09095 | BVU_1792 | 2307568 | 2308308 | 246 | BVU_RS09095 | hypothetical protein | |||||||
BVU_RS09100 | BVU_1793 | 2308330 | 2311656 | 1108 | BVU_RS09100 | AAA domain-containing protein | |||||||
BVU_RS09105 | BVU_1794 | 2311710 | 2313185 | 491 | c | BVU_RS09105 | MFS transporter | ||||||
BVU_RS09110 | BVU_1795 | 2313405 | 2314361 | 318 | c | kduI | 5.3.1.17 | 5-dehydro-4-deoxy-D-glucuronate isomerase | |||||
BVU_RS09115 | BVU_1796 | 2314380 | 2315771 | 463 | c | BVU_RS09115 | PTS sugar transporter subunit IIC | ||||||
BVU_RS09120 | BVU_1797 | 2316061 | 2317290 | 409 | BVU_RS09120 | glycoside hydrolase family 88 protein | |||||||
BVU_RS09125 | BVU_1798 | 2317305 | 2318255 | 316 | BVU_RS09125 | pectinesterase family protein | |||||||
BVU_RS09130 | BVU_1799 | 2318473 | 2321745 | 1090 | BVU_RS09130 | TonB-dependent receptor | |||||||
BVU_RS09135 | BVU_1800 | 2321778 | 2323943 | 721 | BVU_RS09135 | RagB/SusD family nutrient uptake outer membrane protein | |||||||
BVU_RS09140 | BVU_1801 | 2324323 | 2326311 | 662 | BVU_RS09140 | SUMF1/EgtB/PvdO family nonheme iron enzyme | |||||||
BVU_RS09145 | BVU_1802 | 2326855 | 2329401 | 848 | BVU_RS09145 | hypothetical protein | |||||||
BVU_RS09150 | BVU_1803 | 2329464 | 2330984 | 506 | BVU_RS09150 | pectinesterase family protein | |||||||
BVU_RS09155 | BVU_1804 | 2331049 | 2331612 | 187 | BVU_RS09155 | RNA polymerase sigma-70 factor | |||||||
BVU_RS09160 | BVU_1805 | 2331683 | 2332615 | 310 | BVU_RS09160 | FecR family protein | |||||||
BVU_RS09165 | BVU_1806 | 2332671 | 2335970 | 1099 | BVU_RS09165 | TonB-dependent receptor | |||||||
BVU_RS09170 | BVU_1807 | 2335989 | 2337677 | 562 | BVU_RS09170 | RagB/SusD family nutrient uptake outer membrane protein | |||||||
BVU_RS09175 | BVU_1808 | 2337763 | 2340792 | 1009 | BVU_RS09175 | beta-glycosidase | |||||||
BVU_RS09180 | BVU_1809 | 2340795 | 2344163 | 1122 | BVU_RS09180 | PA14 domain-containing protein | |||||||
BVU_RS09185 | BVU_1810 | 2344177 | 2346561 | 794 | BVU_RS09185 | DUF4968 domain-containing protein | |||||||
BVU_RS09190 | BVU_1811 | 2346579 | 2348579 | 666 | BVU_RS09190 | acetylxylan esterase | |||||||
BVU_RS09195 | BVU_1812 | 2348673 | 2349164 | 163 | c | BVU_RS09195 | cupin domain-containing protein | ||||||
BVU_RS09200 | BVU_1813 | 2349353 | 2350966 | 537 | BVU_RS09200 | pectate lyase | |||||||
BVU_RS09205 | BVU_1814 | 2350987 | 2352147 | 386 | BVU_RS09205 | dienelactone hydrolase family protein | |||||||
BVU_RS09210 | BVU_1815 | 2352154 | 2353878 | 574 | BVU_RS09210 | pectinesterase family protein | |||||||
BVU_RS09215 | BVU_1816 | 2354073 | 2358473 | 1466 | BVU_RS09215 | response regulator | |||||||
BVU_RS09220 | BVU_1817 | 2358669 | 2359403 | 244 | BVU_RS09220 | PorT family protein | |||||||
BVU_RS09225 | BVU_1818 | 2359513 | 2361954 | 813 | BVU_RS09225 | alpha/beta fold hydrolase | |||||||
BVU_RS09230 | BVU_1819 | 2362040 | 2363122 | 360 | c | BVU_RS09230 | phosphotransferase | ||||||
BVU_RS09235 | BVU_1820 | 2363230 | 2365482 | 750 | c | BVU_RS09235 | inorganic phosphate transporter | ||||||
BVU_RS09240 | BVU_1821 | 2365763 | 2367286 | 507 | purH | 2.1.2.3 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | ||||||
BVU_RS09245 | BVU_1822 | 2367399 | 2368421 | 340 | BVU_RS09245 | rod shape-determining protein | |||||||
BVU_RS09250 | BVU_1823 | 2368527 | 2369375 | 282 | mreC | rod shape-determining protein MreC | |||||||
BVU_RS09255 | BVU_1824 | 2369384 | 2369884 | 166 | mreD | rod shape-determining protein MreD | |||||||
BVU_RS09260 | BVU_1825 | 2369884 | 2371734 | 616 | mrdA | 3.4.16.4 | penicillin-binding protein 2 | ||||||
BVU_RS09265 | BVU_1826 | 2371715 | 2373169 | 484 | rodA | rod shape-determining protein RodA | |||||||
BVU_RS09270 | BVU_1827 | 2373173 | 2373670 | 165 | c | BVU_RS09270 | gliding motility lipoprotein GldH | ||||||
BVU_RS09275 | BVU_1828 | 2373633 | 2375147 | 504 | c | BVU_RS09275 | hypothetical protein | ||||||
BVU_RS09280 | BVU_1829 | 2375237 | 2376361 | 374 | c | BVU_RS09280 | DNA polymerase III subunit delta | ||||||
BVU_RS09285 | BVU_1830 | 2376389 | 2377342 | 317 | c | metF | 1.5.1.20 | methylenetetrahydrofolate reductase [NAD(P)H] | |||||
BVU_RS09290 | BVU_1831 | 2377698 | 2378993 | 431 | c | cls | cardiolipin synthase | ||||||
BVU_RS21525 | 2379355 | 2379456 | 33 | BVU_RS21525 | left-handed beta-roll domain-containing protein | ||||||||
BVU_RS09300 | BVU_1835 | 2380262 | 2381398 | 378 | c | BVU_RS09300 | AI-2E family transporter | ||||||
BVU_RS09305 | BVU_1836 | 2381409 | 2382008 | 199 | c | BVU_RS09305 | 2.7.1.21 | thymidine kinase | |||||
BVU_RS09310 | BVU_1837 | 2382213 | 2382887 | 224 | rsmI | 2.1.1.198 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | ||||||
BVU_RS09315 | BVU_1838 | 2382916 | 2383764 | 282 | BVU_RS09315 | hypothetical protein | |||||||
BVU_RS09320 | BVU_1839 | 2383840 | 2384529 | 229 | BVU_RS09320 | YjjG family noncanonical pyrimidine nucleotidase | |||||||
BVU_RS09325 | BVU_1840 | 2384680 | 2386155 | 491 | c | BVU_RS09325 | RagB/SusD family nutrient uptake outer membrane protein | ||||||
BVU_RS09330 | BVU_1841 | 2386184 | 2389192 | 1002 | c | BVU_RS09330 | TonB-dependent receptor | ||||||
BVU_RS09335 | BVU_1842 | 2389560 | 2390720 | 386 | BVU_RS09335 | site-specific integrase | |||||||
BVU_RS09340 | BVU_1843 | 2391311 | 2394271 | 986 | BVU_RS09340 | TonB-dependent receptor | |||||||
BVU_RS09345 | BVU_1844 | 2394296 | 2395837 | 513 | BVU_RS09345 | RagB/SusD family nutrient uptake outer membrane protein | |||||||
BVU_RS09350 | BVU_1845 | 2395862 | 2396650 | 262 | BVU_RS09350 | hypothetical protein | |||||||
BVU_RS09360 | BVU_1847 | 2397671 | 2400601 | 976 | BVU_RS09360 | TonB-dependent receptor | |||||||
BVU_RS09365 | BVU_1848 | 2400602 | 2402143 | 513 | BVU_RS09365 | RagB/SusD family nutrient uptake outer membrane protein | |||||||
BVU_RS09370 | BVU_1849 | 2402288 | 2403943 | 551 | BVU_RS09370 | IS1182 family transposase | |||||||
BVU_RS09375 | BVU_1850 | 2404399 | 2407332 | 977 | BVU_RS09375 | TonB-dependent receptor |
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Accession | Locus | Locus_old | Name | EC_Number | Function-deposited genome | Ara | Frc | Fuc | Gal | Glc | GluA | Lac | Mal | Man | Rha | Sac | Xyn | Xylo | aCyclo | old name | newest name |
Glucose | |||||||||||||||||||||
ABR37919.1 | BVU_RS00975 | BVU_0191 | NagC | 2.7.1.2 | ROK family protein | 24.666667 | 29 | 31.666667 | 36 | 22.333333 | 27.666667 | 44.333333 | 46.666667 | 33 | 42.666667 | 24 | 31 | 37 | 21.666667 | ROK family transcriptional repressor, with glucokinase domain | |
ABR41711.1 | BVU_RS20600 | BVU_4109 | pgi | 5.3.1.9 | glucose-6-phosphate isomerase | 31 | 19 | 27 | 22.333333 | 29.666667 | 26 | 32.666667 | 30.333333 | 29.666667 | 33.666667 | 28.666667 | 33 | 36.666667 | 29.666667 | ||
ABR39945.1 | BVU_RS11505 | BVU_2286 | pfp/pfkA | 2.7.1.90 | diphosphate--fructose-6-phosphate 1-phosphotransferase | 88.666667 | 48 | 45.666667 | 60 | 38 | 57.333333 | 46.333333 | 52 | 68 | 78 | 73.333333 | 43 | 53 | 65.333333 | phosphofructokinase, 2.7.1.11, pfkA | |
ABR39352.1 | BVU_RS08495 | BVU_1671 | fbaA | 4.1.2.13 | class II fructose-1,6-bisphosphate aldolase | 135.33333 | 161.33333 | 117.66667 | 198 | 149 | 83 | 139 | 138.33333 | 153.33333 | 119.33333 | 147 | 103 | 137 | 107.66667 | fructose-bisphosphate aldolase [Phocaeicola vulgatus ATCC 8482] | |
ABR38176.1 | BVU_RS22130 | BVU_0466 | tpiA | 5.3.1.1 | triose-phosphate isomerase | 125.66667 | 149.66667 | 109 | 170.66667 | 139.66667 | 67 | 137.33333 | 126.33333 | 134 | 108.33333 | 131.66667 | 86 | 109.66667 | 98.333333 | ||
ABR41198.1 | BVU_RS18000 | BVU_3585 | gapA | 1.2.1.12/59 | type I glyceraldehyde-3-phosphate dehydrogenase | 256.33333 | 342.33333 | 326 | 529 | 342.66667 | 215.66667 | 302.66667 | 337 | 302.33333 | 295.33333 | 399 | 175.33333 | 276 | 250.66667 | glyceraldehyde 3-phosphate dehydrogenase | |
ABR39867.1 | BVU_RS11105 | BVU_2206 | pgk | 2.7.2.3 | phosphoglycerate kinase | 83.666667 | 100 | 83.666667 | 120.33333 | 91.333333 | 47.333333 | 104.33333 | 96.666667 | 93.666667 | 89.666667 | 82 | 71.666667 | 92.333333 | 74.666667 | ||
ABR39064.1 | BVU_RS06960 | BVU_1375 | gpmI | 5.4.2.12 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 49.666667 | 58 | 30.333333 | 51 | 52 | 20.666667 | 43 | 46.333333 | 50.333333 | 32 | 58 | 27.666667 | 43.666667 | 37 | ||
ABR40293.1 | BVU_RS13285 | BVU_2641 | eno | 4.2.1.11 | phosphopyruvate hydratase | 33 | 42.666667 | 13 | 58.333333 | 62 | 42.333333 | 37.666667 | 46.666667 | 36 | 28 | 37.666667 | 20.666667 | 37.666667 | 14.333333 | enolase | |
ABR38571.1 | BVU_RS04440 | BVU_0876 | pyk | 2.7.1.40 | pyruvate kinase | 18.666667 | 18.333333 | 13.333333 | 24.666667 | 15.666667 | 10 | 11 | 8 | 21.333333 | 11.333333 | 21 | 9.6666667 | 11.333333 | 14.333333 | ||
Pyruvate -> Phosphoenolpyruvate | |||||||||||||||||||||
ABR40984.1 | BVU_RS16880 | BVU_3358 | ppdK | 2.7.9.1 | pyruvate, phosphate dikinase | 0 | 0 | 18.333333 | 2.3333333 | 0 | 6 | 15 | 19.666667 | 4 | 82.333333 | 0 | 13.666667 | 11 | 0 | ||
Pyruvate -> Formate | |||||||||||||||||||||
ABR40522.1 | BVU_RS14525 | BVU_2880 | pflB | 2.3.1.54 | formate C-acetyltransferase | 34.666667 | 4.6666667 | 2 | 24.333333 | 11.333333 | 23 | 1.6666667 | 2 | 32 | 10 | 91.666667 | 0 | 3.3333333 | 32.333333 | formate acetyltransferase | |
Pyruvate -> Acetate | |||||||||||||||||||||
ABR41398.1 | BVU_RS18985 | BVU_3787 | nifJ | 1.2.7.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | 183.66667 | 26.666667 | 48 | 56.666667 | 17 | 109.33333 | 69 | 106.33333 | 67.333333 | 139 | 113 | 67.666667 | 43.666667 | 95.333333 | pyruvate-flavodoxin oxidoreductase | |
ABR38233.1 | BVU_RS02670 | BVU_0523 | pta | 2.3.1.8 | phosphate acetyltransferase | 13.666667 | 11.333333 | 24.333333 | 17 | 13 | 39.666667 | 10.333333 | 12.666667 | 0 | 28.666667 | 12.333333 | 20 | 15.333333 | 3.6666667 | ||
ABR38234.1 | BVU_RS02675 | BVU_0524 | ackA | 2.7.2.1 | acetate kinase | 17.333333 | 13.333333 | 29.333333 | 13.333333 | 13.333333 | 34.333333 | 15.666667 | 20.666667 | 5.6666667 | 29.333333 | 16 | 25.333333 | 20 | 6.6666667 | ||
Pyruvate -> Lactate -> Lactaldehyde | |||||||||||||||||||||
ABR40156.1 | BVU_RS12585 | BVU_2499 | ldh | 1.1.1.28 | 2-hydroxyacid dehydrogenase | 8.3333333 | 9.6666667 | 0 | 5 | 0 | 5 | 8.3333333 | 3.3333333 | 9.6666667 | 0 | 4 | 0 | 4.6666667 | 5.6666667 | ||
ABR39465.1 | BVU_RS09080 | BVU_1789 | aldA | 1.2.1.- | aldehyde dehydrogenase | 0 | 0 | 0 | 0 | 0 | 14 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | ||
Phosphoenolpyruvate -> Succinate | |||||||||||||||||||||
ABR38671.1 | BVU_RS04950 | BVU_0976 | pckA | 4.1.1.49 | phosphoenolpyruvate carboxykinase (ATP) | 194.33333 | 208.33333 | 125 | 274.66667 | 206.33333 | 93.333333 | 203.66667 | 201.33333 | 263 | 104 | 217 | 172.66667 | 184.66667 | 162 | phosphoenolpyruvate carboxykinase | |
ABR37978.1 | BVU_RS01300 | BVU_0256 | mdh | 1.1.1.37 | malate dehydrogenase | 120.66667 | 145.33333 | 67.333333 | 120.66667 | 154.33333 | 37.666667 | 100.66667 | 94.333333 | 113 | 60 | 125.33333 | 77.666667 | 101 | 69.666667 | ||
ABR38172.1 | BVU_RS02370 | BVU_0462 | mdh | 1.1.1.37 | malate dehydrogenase | 33.333333 | 36 | 42.666667 | 64.666667 | 47.333333 | 91.333333 | 50.333333 | 50.666667 | 40.333333 | 42.333333 | 32.333333 | 38.666667 | 44.666667 | 23.333333 | ||
ABR39534.1 | BVU_RS09420 | BVU_1859 | fumA/B | 4.2.1.2 | fumarate hydratase | 70.333333 | 70.666667 | 41 | 91.333333 | 56.666667 | 45.666667 | 66.333333 | 61.666667 | 77 | 26 | 59 | 57.666667 | 60.666667 | 43 | anaerobic fumarate hydratase class I | |
ABR38929.1 | BVU_RS06265 | BVU_1239 | FrdC | 0 | succinate dehydrogenase/fumarate reductase cytochrome b subunit | 28 | 15.666667 | 19.333333 | 14 | 16.333333 | 24 | 11.333333 | 10 | 23.666667 | 9 | 20 | 21.333333 | 15.333333 | 21.666667 | putative cytochrome B subunit | |
ABR38930.1 | BVU_RS06270 | BVU_1240 | FrdA | 1.3.5.1 | fumarate reductase/succinate dehydrogenase flavoprotein subunit | 131.33 | 80 | 73.333 | 130 | 120.67 | 130.67 | 95.333 | 103.67 | 130.67 | 47 | 114.67 | 51.333 | 57 | 98.333 | fumarate reductase flavoprotein subunit | |
ABR38931.1 | BVU_RS06275 | BVU_1241 | FrdB | 1.3.5.1 | succinate dehydrogenase/fumarate reductase iron-sulfur subunit | 26 | 22 | 20.667 | 53.333 | 35.333 | 16 | 22.667 | 19.667 | 23 | 21 | 24 | 23 | 20 | 13.667 | fumarate reductase iron-sulfur cluster protein subunit | |
Succinate -> Propionate | |||||||||||||||||||||
ABR38854.1 | BVU_RS05880 | BVU_1163 | scpC | 2.8.3.27 | propanoyl-CoA:succinate CoA transferase | 0.6667 | 0 | 7.6667 | 2.3333 | 2.3333 | 10.667 | 7 | 10.333 | 3 | 4.3333 | 2 | 6.6667 | 3.6667 | 0 | putative coenzyme A transferase | acetyl-CoA hydrolase/transferase family protein |
ABR38030.1 | BVU_RS01580 | BVU_0310 | scpA | 5.4.99.2 | methylmalonyl-CoA mutase | 34.667 | 3.6667 | 31.333 | 12.667 | 4 | 29.333 | 19 | 21.333 | 36 | 37.667 | 20.667 | 25 | 14.667 | 28 | methylmalonyl-CoA mutase large subunit | |
ABR40149.1 | BVU_RS12550 | BVU_2492 | mce | 5.1.99.1 | methylmalonyl-CoA epimerase | 9 | 11.333 | 5.6667 | 12 | 11.667 | 12 | 18.333 | 16.667 | 9.6667 | 9 | 7.6667 | 11.667 | 12.667 | 6.3333 | lactoyl gluthatione lyase | |
ABR40148.1 | BVU_RS12545 | BVU_2491 | MmdA | 0 | acyl-CoA carboxylase subunit beta | 28.333 | 8.3333 | 28 | 17.667 | 13.333 | 20.667 | 28.667 | 37 | 31 | 30 | 15.333 | 33 | 19 | 22.667 | propionyl-CoA carboxylase beta chain | |
ABR40736.1 | BVU_RS15640 | BVU_3102 | PccB | 0 | acyl-CoA carboxylase subunit beta | 27.667 | 28.333 | 9 | 29.667 | 38.333 | 16.333 | 26.333 | 22.333 | 16.333 | 8.3333 | 33.667 | 16.667 | 22.667 | 22 | propionyl-CoA carboxylase beta chain | |
α-Cyclodextrin -> Glucose | |||||||||||||||||||||
ABR39071.1 | BVU_RS06995 | BVU_1382 | susA | 3.2.1.54 | glycoside hydrolase family 13 protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4.3333 | 0 | 0 | 0 | 0 | 0 | 6 | glycoside hydrolase family 13, candidate alpha-glycosidase | |
ABR39070.1 | BVU_RS06990 | BVU_1381 | susB | 3.2.1.3 | glycoside hydrolase family 97 | 0 | 0 | 0 | 0 | 0 | 8.667 | 0 | 20.333 | 0 | 0 | 0 | 0 | 0 | 53 | ||
ABR40671.1 | BVU_RS15290 | BVU_3034 | pulA | 3.2.1.41 | type I pullulanase | 6 | 0 | 0 | 0 | 0 | 4.333 | 0 | 0 | 4.667 | 0 | 2.333 | 0 | 2 | 6.3 | Blast: Pullulanase, 3.2.1.41 | |
ABR41177.1 | BVU_RS17875 | BVU_3559 | glgP | 2.4.1.1 | alpha-glucan family phosphorylase | 51.667 | 7.3333 | 30.333 | 19 | 4 | 52 | 25 | 34 | 59 | 81.667 | 45.333 | 18.333 | 16.333 | 44.333 | glycosyltransferase family 35, candidate alpha-glucan phosphorylase | |
ABR41415.1 | BVU_RS19070 | BVU_3804 | pgm | 5.4.2.2 | phospho-sugar mutase | 14 | 11.333 | 33.667 | 26.333 | 16.667 | 42.667 | 36.333 | 39 | 19.333 | 32.667 | 18.333 | 48.333 | 43 | 12.333 | putative phosphoglucomutase | |
Sucrose -> Glykolyse | |||||||||||||||||||||
ABR39344.1 | BVU_RS08455 | BVU_1663 | fruA | 0 | GH32 C-terminal domain-containing protein | 0 | 75.333333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 24 | 0 | 0 | 0 | glycoside hydrolase family 32, candidate levanase | |
ABR39346.1 | BVU_RS08465 | BVU_1665 | scrK | 2.7.1.4 | carbohydrate kinase | 0 | 45 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13.333333 | 34.666667 | 3 | 13.333333 | 0 | fructokinase | |
ABR37919.1 | BVU_RS00975 | BVU_0191 | NagC | 2.7.1.2 | ROK family protein | 24.666667 | 29 | 31.666667 | 36 | 22.333333 | 27.666667 | 44.333333 | 46.666667 | 33 | 42.666667 | 24 | 31 | 37 | 21.666667 | ROK family transcriptional repressor, with glucokinase domain | |
Mannose -> Glykolyse | |||||||||||||||||||||
ABR37919.1 | BVU_RS00975 | BVU_0191 | NagC | 2.7.1.2 | ROK family protein | 24.666667 | 29 | 31.666667 | 36 | 22.333333 | 27.666667 | 44.333333 | 46.666667 | 33 | 42.666667 | 24 | 31 | 37 | 21.666667 | ROK family transcriptional repressor, with glucokinase domain | |
ABR39379.1 | BVU_RS08655 | BVU_1703 | manA | 5.3.1.8 | class I mannose-6-phosphate isomerase | 10.666667 | 7.3333333 | 13.333333 | 13.666667 | 10.666667 | 9.3333333 | 17.333333 | 12.666667 | 13.666667 | 10 | 10.666667 | 11.666667 | 12 | 9.3333333 | mannose-6-phosphate isomerase | |
Lactose/Galactose -> Glykolyse | |||||||||||||||||||||
ABR38690.1 | BVU_RS05055 | BVU_0997 | lacZ | 3.2.1.23 | DUF4981 domain-containing protein | 7.3333333 | 0 | 10.666667 | 6 | 1.6666667 | 5.6666667 | 15.333333 | 16.666667 | 4.3333333 | 5 | 2.6666667 | 26.333333 | 6 | 4.6666667 | glycoside hydrolase family 2, candidate beta-galactosidase [Phocaeicola vulgatus ATCC 8482] | glycoside hydrolase family 2 TIM barrel-domain |
ABR39986.1 | BVU_RS11705 | BVU_2327 | galM | 5.1.3.3 | galactose mutarotase | 0 | 2.3333333 | 5.3333333 | 6 | 3.3333333 | 8 | 8.3333333 | 9.3333333 | 4.3333333 | 9.6666667 | 0 | 8 | 5.3333333 | 2.3333333 | aldose 1-epimerase precursor [Phocaeicola vulgatus ATCC 8482] | |
ABR39984.1 | BVU_RS11695 | BVU_2325 | galK | 2.7.1.6 | galactokinase | 35.666667 | 29.666667 | 67.333333 | 51 | 33.666667 | 67.666667 | 96 | 88.333333 | 46 | 84.333333 | 21 | 80.333333 | 79.666667 | 32.333333 | ||
ABR40061.1 | BVU_RS19795 | BVU_3949 | rfbA | 2.7.7.24 | glucose-1-phosphate thymidylyltransferase RfbA | 1.3333 | 4 | 4.6667 | 9.3333 | 3.6667 | 8.3333 | 7.6667 | 7.3333 | 3 | 8.6667 | 1.3333 | 6.3333 | 5 | 1.6667 | ||
ABR41486.1 | BVU_RS19470 | BVU_3883 | galE | 5.1.3.2 | UDP-glucose 4-epimerase GalE | 26 | 30 | 40.333333 | 35 | 23 | 37.333333 | 41.666667 | 45 | 29.333333 | 50 | 25.666667 | 30.666667 | 35.666667 | 20.333333 | ||
ABR41415.1 | BVU_RS19070 | BVU_3804 | pgm | 5.4.2.2 | phospho-sugar mutase | 14 | 11.333333 | 33.666667 | 26.333333 | 16.666667 | 42.666667 | 36.333333 | 39 | 19.333333 | 32.666667 | 18.333333 | 48.333333 | 43 | 12.333333 | putative phosphoglucomutase [Phocaeicola vulgatus ATCC 8482] | |
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Accession | Locus | Locus_old | Name | EC_Number | Function-deposited genome | Glc | Gal | Frc | Man | Rha | Fuc | GluA | Ara | Xylo | Mal | Lac | Sac | aCyclo | Xyn | old name | newest name | ||||||||||||
Na+/H+ antiporter | |||||||||||||||||||||||||||||||||
ABR40856.1 | BVU_RS16245 | BVU_3227 | 0 | sodium:proton antiporter | |||||||||||||||||||||||||||||
ABR41507.1 | BVU_RS19570 | BVU_3904 | nhaA | 0 | Na+/H+ antiporter NhaA | ||||||||||||||||||||||||||||
ABR40689.1 | BVU_RS15380 | BVU_3052 | 0 | Na+/H+ antiporter NhaC family protein | |||||||||||||||||||||||||||||
specific Permeases/transporter | |||||||||||||||||||||||||||||||||
ABR37948.1 | BVU_RS01125 | BVU_0221 | fucP | 0 | L-fucose:H+ symporter permease | ||||||||||||||||||||||||||||
ABR39061.1 | BVU_RS06945 | BVU_1372 | L-fucose:H+ symporter permease | 0 | 0 | 0 | 0 | 0 | 11.667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.6667 | ||||||||||||||||
ABR39985.1 | BVU_RS11700 | BVU_2326 | fucP | MFS transporter | glucose/galactose transporter [Phocaeicola vulgatus ATCC 8482] | ||||||||||||||||||||||||||||
ABR40261.1 | BVU_RS13120 | BVU_2606 | fucP | sugar MFS transporter | fucose permease [Phocaeicola vulgatus ATCC 8482] | ||||||||||||||||||||||||||||
ABR39040.1 | BVU_RS06840 | BVU_1351 | araJ | MFS transporter AraJ | putative transmembrane efflux protein | ||||||||||||||||||||||||||||
ABR38455.1 | BVU_RS03810 | BVU_0751 | araE | sugar porter family MFS transporter | |||||||||||||||||||||||||||||
ABR41675.1 | BVU_RS20420 | BVU_4073 | xylE | D-xylose transporter XylE | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14.666667 | putative sugar-transport membrane protein [Phocaeicola vulgatus ATCC 8482] | ||||||||||||||
ABR40362.1 | BVU_RS13635 | BVU_2711 | lctP | L-lactate permease | |||||||||||||||||||||||||||||
ABR39075.1 | BVU_RS07015 | BVU_1386 | malY/T | MFS transporter | |||||||||||||||||||||||||||||
ABR39345.1 | BVU_RS08460 | BVU_1664 | MFS transporter | 0 | 0 | 2.6666667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | putative sugar transport-related, membrane protein [Phocaeicola vulgatus ATCC 8482] | |||||||||||||||
ABR40406.1 | BVU_RS13870 | BVU_2756 | oligopeptide transporter, OPT family | ||||||||||||||||||||||||||||||
ABR41250.1 | BVU_RS18245 | BVU_3639 | MFS transporter | 0 | 0 | 0 | 0 | 1.6666667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | putative sugar transporter [Phocaeicola vulgatus ATCC 8482] | |||||||||||||||
ABR41497.1 | BVU_RS19525 | BVU_3894 | MFS transporter | ||||||||||||||||||||||||||||||
ABR41721.1 | BVU_RS20650 | BVU_4119 | MFS transporter | ||||||||||||||||||||||||||||||
further transporter | |||||||||||||||||||||||||||||||||
ABR37923.1 | BVU_RS00995 | BVU_0195 | efflux RND transporter periplasmic adaptor subunit | 24.667 | 16.667 | 22 | 8.3333 | 9.3333 | 18.667 | 10 | 7.3333 | 28.667 | 13 | 28.333 | 9.3333 | 9.3333 | 26 | ||||||||||||||||
ABR37959.1 | BVU_RS01200 | BVU_0237 | efflux RND transporter permease subunit | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.3333 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR37960.1 | BVU_RS01205 | BVU_0238 | efflux RND transporter periplasmic adaptor subunit | 14.667 | 8.6667 | 14.667 | 6.6667 | 2.3333 | 23.333 | 3.6667 | 8 | 23.333 | 11.667 | 24.333 | 1.6667 | 5.3333 | 23.667 | ||||||||||||||||
ABR37964.1 | BVU_RS01225 | BVU_0242 | efflux transporter outer membrane subunit | 46 | 27 | 46.667 | 13.333 | 8.3333 | 23.333 | 20.333 | 25.333 | 27.333 | 9.3333 | 32.667 | 21.667 | 22.667 | 25.667 | ||||||||||||||||
ABR37965.1 | BVU_RS01230 | BVU_0243 | efflux RND transporter permease subunit | 7.3333 | 5.3333 | 6 | 9 | 3.6667 | 6.3333 | 9.6667 | 15.333 | 0 | 3.6667 | 5 | 14.667 | 8 | 4.3333 | ||||||||||||||||
ABR37966.1 | BVU_RS01235 | BVU_0244 | efflux RND transporter periplasmic adaptor subunit | 35.667 | 44 | 43 | 35 | 20 | 45 | 41.667 | 30.667 | 35.667 | 28.333 | 40 | 41.667 | 22.333 | 37.333 | ||||||||||||||||
ABR38027.1 | BVU_RS01565 | BVU_0307 | ATP-binding cassette domain-containing protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.6667 | 0 | ABC-F family ATP-binding cassette domain-containing protein | |||||||||||||||
ABR38028.1 | BVU_RS01570 | BVU_0308 | putative transporter | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5.3333 | 0 | 0 | 0 | 0 | 2 | 0 | ||||||||||||||||
ABR38037.1 | BVU_RS01615 | BVU_0317 | multidrug efflux RND transporter permease subunit | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | multidrug efflux RND transporter permease subunit | |||||||||||||||
ABR38038.1 | BVU_RS01620 | BVU_0318 | efflux RND transporter periplasmic adaptor subunit | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | efflux RND transporter periplasmic adaptor subunit | |||||||||||||||
ABR38039.1 | BVU_RS01625 | BVU_0319 | TolC family protein | 4.3333 | 0 | 2.3333 | 0 | 0 | 0 | 0 | 2.3333 | 0 | 0 | 0 | 0 | 1 | 0 | TolC family protein | |||||||||||||||
ABR38162.1 | BVU_RS02290 | BVU_0447 | LPS export ABC transporter ATP-binding protein | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR38164.1 | BVU_RS02300 | BVU_0449 | ABC transporter ATP-binding protein | 0 | 0 | 0 | 1 | 0 | 0.6667 | 0 | 0.6667 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR38185.1 | BVU_RS02435 | BVU_0475 | biopolymer transporter ExbD | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | ||||||||||||||||
ABR38763.1 | BVU_RS05425 | BVU_1072 | ABC transporter ATP-binding protein/permease | 3.3333 | 2.6667 | 2.3333 | 6.3333 | 1.6667 | 2.3333 | 5 | 5.3333 | 4 | 0 | 3.3333 | 5.3333 | 1.6667 | 0 | ABC transporter ATP-binding protein | |||||||||||||||
ABR39046.1 | BVU_RS06870 | BVU_1357 | Fe-S cluster assembly protein SufB | 5.6667 | 2.3333 | 5 | 4.6667 | 0 | 1.3333 | 1.3333 | 3 | 2.3333 | 3.3333 | 2 | 6 | 2 | 0 | ||||||||||||||||
ABR39047.1 | BVU_RS06875 | BVU_1358 | Fe-S cluster assembly ATPase SufC | 7.6667 | 8 | 7.6667 | 5.3333 | 4 | 1.3333 | 3 | 3.6667 | 7.3333 | 1 | 8.6667 | 5.3333 | 1.3333 | 0 | ||||||||||||||||
ABR39048.1 | BVU_RS06880 | BVU_1359 | Fe-S cluster assembly protein SufD | 5.6667 | 5.6667 | 9 | 3.3333 | 2.3333 | 1 | 0 | 6.6667 | 1.6667 | 4 | 4.3333 | 4.3333 | 3.6667 | 2 | ||||||||||||||||
ABR39177.1 | BVU_RS07545 | BVU_1490 | sodium-dependent transporter | 13.667 | 4.6667 | 9.6667 | 7.3333 | 1 | 4 | 4.6667 | 8.3333 | 11 | 5 | 7 | 3.3333 | 6.6667 | 15.667 | ||||||||||||||||
ABR39302.1 | BVU_RS08240 | BVU_1621 | ATP-binding cassette domain-containing protein | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR39345.1 | BVU_RS08460 | BVU_1664 | MFS transporter | 0 | 0 | 2.6667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR39472.1 | BVU_RS09115 | BVU_1796 | PTS sugar transporter subunit IIC | 0 | 0 | 0 | 0 | 1.6667 | 5 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 2.6667 | ||||||||||||||||
ABR39539.1 | BVU_RS09445 | BVU_1864 | efflux RND transporter periplasmic adaptor subunit | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR39616.1 | BVU_RS09850 | BVU_1944 | biopolymer transporter ExbD | 43.667 | 46.333 | 49 | 35.333 | 32.333 | 44.333 | 42.667 | 29 | 52.667 | 28.667 | 40.333 | 35.333 | 30 | 39.667 | ||||||||||||||||
ABR39617.1 | BVU_RS09855 | BVU_1945 | biopolymer transporter ExbD | 93.333 | 74.667 | 67.667 | 86.333 | 52 | 69.667 | 82 | 86.333 | 81.667 | 81 | 94.333 | 101 | 63.667 | 85.333 | ||||||||||||||||
ABR39640.1 | BVU_RS09975 | BVU_1968 | ATP-binding protein | 0 | 4.6667 | 0 | 0 | 0.6667 | 0 | 1.6667 | 0 | 0 | 1 | 7 | 0 | 0 | 0 | ||||||||||||||||
ABR39646.1 | BVU_RS10005 | BVU_1974 | OadG family protein | 3 | 6 | 0 | 5.3333 | 3.6667 | 10.667 | 2.3333 | 3.3333 | 9 | 12 | 14 | 0 | 2 | 16.333 | Blast: OadG family transporter subunit | |||||||||||||||
ABR39720.1 | BVU_RS10405 | BVU_2055 | ABC transporter substrate-binding protein | 0 | 1.3333 | 1.6667 | 0 | 0 | 0 | 2.6667 | 0 | 0 | 3.3333 | 2.3333 | 0 | 0 | 0 | ||||||||||||||||
ABR39982.1 | BVU_RS11685 | BVU_2323 | sodium:solute symporter | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 22.333 | 0 | 0 | 0 | 0 | 0 | 3.6667 | Solute:sodium symporter (SSS) family transporter | |||||||||||||||
ABR39990.1 | BVU_RS11725 | BVU_2331 | ATP-binding cassette domain-containing protein | 0 | 2.3333 | 1.3333 | 1.3333 | 0 | 1.3333 | 2 | 4.6667 | 0 | 0 | 0 | 5 | 0 | 0 | ||||||||||||||||
ABR40007.1 | BVU_RS11810 | BVU_2348 | FtsX-like permease family protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.6667 | ||||||||||||||||
ABR40147.1 | BVU_RS12540 | BVU_2490 | OadG family protein | 4.3333 | 4.3333 | 3.3333 | 5.3333 | 2.6667 | 2.6667 | 3.6667 | 3.3333 | 2.3333 | 1.6667 | 5.6667 | 2 | 0 | 8.6667 | OadG family transporter subunit | |||||||||||||||
ABR40168.1 | BVU_RS12645 | BVU_2511 | ABC transporter ATP-binding protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | ||||||||||||||||
ABR40685.1 | BVU_RS15360 | BVU_3048 | peptide MFS transporter | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR40746.1 | BVU_RS15690 | BVU_3112 | putative transporter | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 1.6667 | 0 | putative potassium uptake protein [Phocaeicola vulgatus ATCC 8482] | |||||||||||||||
ABR40801.1 | BVU_RS15980 | BVU_3169 | ABC transporter ATP-binding protein | 0 | 3 | 0 | 0 | 6 | 12.667 | 38.333 | 0 | 6.3333 | 4.6667 | 8.3333 | 0 | 1.6667 | 6.3333 | ||||||||||||||||
ABR40802.1 | BVU_RS15985 | BVU_3170 | FtsX-like permease family protein | 0.6667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ABC transporter permease | |||||||||||||||
ABR40805.1 | BVU_RS16000 | BVU_3173 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 17.667 | 0 | 0 | 5.6667 | 3 | 11.667 | 0 | 0 | 8.3333 | HlyD family efflux transporter periplasmic adaptor subunit | |||||||||||||||
ABR41061.1 | BVU_RS17265 | BVU_3437 | ABC transporter ATP-binding protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR41250.1 | BVU_RS18245 | BVU_3639 | MFS transporter | 0 | 0 | 0 | 0 | 1.6667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | ||||||||||||||||
ABR41423.1 | BVU_RS19115 | BVU_3812 | putative sulfate exporter family transporter | 0 | 0 | 0 | 0 | 0 | 0.6667 | 0 | 1 | 0 | 0 | 0 | 0 | 0.6667 | 0 | D-xylose transporter XylE | |||||||||||||||
ABR41675.1 | BVU_RS20420 | BVU_4073 | D-xylose transporter XylE | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14.667 | ||||||||||||||||
ABR41680.1 | BVU_RS20445 | BVU_4078 | efflux RND transporter periplasmic adaptor subunit | 3.6667 | 7.6667 | 1.6667 | 2.3333 | 0 | 0 | 4.3333 | 0 | 0 | 0 | 3.3333 | 3.3333 | 0 | 0 | ||||||||||||||||
ABR41726.1 | BVU_RS20675 | BVU_4124 | efflux RND transporter periplasmic adaptor subunit | 0 | 1.3333 | 0 | 0 | 1 | 11.333 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | ||||||||||||||||
ABR41727.1 | BVU_RS20680 | BVU_4125 | efflux RND transporter permease subunit | 0 | 1.6667 | 0 | 0 | 1.3333 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR37773.1 | BVU_RS00225 | BVU_0043 | glycoside-pentoside-hexuronide (GPH):cation symporter | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7.6667 | ||||||||||||||||
ABR39061.1 | BVU_RS06945 | BVU_1372 | L-fucose:H+ symporter permease | 0 | 0 | 0 | 0 | 0 | 11.667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.6667 | ||||||||||||||||
ABR40393.1 | BVU_RS13805 | BVU_2743 | potassium/proton antiporter | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.6667 | 0 | 0 | ||||||||||||||||
ABR41205.1 | BVU_RS18035 | BVU_3592 | efflux RND transporter permease subunit | 0 | 0 | 1 | 0.6667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Blast: Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter | |||||||||||||||
uptake protein | |||||||||||||||||||||||||||||||||
ABR37767.1 | BVU_RS00195 | BVU_0037 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 355.67 | ||||||||||||||||
ABR37855.1 | BVU_RS00635 | BVU_0125 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | ||||||||||||||||
ABR38108.1 | BVU_RS01985 | BVU_0390 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14 | ||||||||||||||||
ABR38202.1 | BVU_RS02520 | BVU_0492 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 8.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10.667 | ||||||||||||||||
ABR38209.1 | BVU_RS02555 | BVU_0499 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 38.667 | ||||||||||||||||
ABR38216.1 | BVU_RS02585 | BVU_0506 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 11.667 | 55.667 | 0 | 0 | 7.6667 | 20.667 | 15.333 | 0 | 0 | 32.333 | ||||||||||||||||
ABR38293.1 | BVU_RS02970 | BVU_0585 | TonB-dependent receptor | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6.6667 | Blast: SusC/RagA family TonB-linked outer membrane protein | RagB/SusD family nutrient uptake outer membrane protein | ||||||||||||||
ABR38539.1 | BVU_RS04275 | BVU_0842 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | ||||||||||||||||
ABR38546.1 | BVU_RS04310 | BVU_0849 | PepSY domain-containing protein | 4 | 0 | 0.6667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7.3333 | 0 | 0 | PepSY-associated TM helix domain-containing protein | |||||||||||||||
ABR38642.1 | BVU_RS04810 | BVU_0947 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8.3333 | ||||||||||||||||
ABR38655.1 | BVU_RS04875 | BVU_0960 | RagB/SusD family nutrient uptake outer membrane protein | 9.3333 | 23.333 | 1.3333 | 6.6667 | 26.667 | 39.667 | 13.333 | 1.3333 | 30.667 | 42 | 53 | 0.6667 | 0 | 70.667 | ||||||||||||||||
ABR38774.1 | BVU_RS05480 | BVU_1083 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR38849.1 | BVU_RS05855 | BVU_1158 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 4 | ||||||||||||||||
ABR39068.1 | BVU_RS06980 | BVU_1379 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 121.33 | 0 | 0 | 63.667 | 0 | 0 | 103.67 | 3 | ||||||||||||||||
ABR39515.1 | BVU_RS09325 | BVU_1840 | RagB/SusD family nutrient uptake outer membrane protein | 22.333 | 35.333 | 24.333 | 21 | 13.333 | 8.3333 | 51.667 | 9.6667 | 36.667 | 30 | 41.333 | 27.333 | 15.667 | 35.333 | ||||||||||||||||
ABR39519.1 | BVU_RS09345 | BVU_1844 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR39523.1 | BVU_RS09365 | BVU_1848 | RagB/SusD family nutrient uptake outer membrane protein | 11.667 | 5.3333 | 11.667 | 0 | 1 | 0 | 5 | 8.6667 | 2.3333 | 0 | 0 | 3.3333 | 7 | 0 | ||||||||||||||||
ABR39528.1 | BVU_RS09390 | BVU_1853 | RagB/SusD family nutrient uptake outer membrane protein | 11 | 21.333 | 11.667 | 6.3333 | 0 | 5 | 8.3333 | 10 | 3.3333 | 0 | 5.6667 | 6.6667 | 10 | 5.6667 | ||||||||||||||||
ABR39530.1 | BVU_RS09400 | BVU_1855 | RagB/SusD family nutrient uptake outer membrane protein | 66 | 23.333 | 65 | 29.333 | 33 | 49 | 53.333 | 46.667 | 30.333 | 13.667 | 39.333 | 50.333 | 49.667 | 64 | ||||||||||||||||
ABR39651.1 | BVU_RS09520 | BVU_1879 | YraN family protein | 0 | 2 | 1.6667 | 0 | 5.3333 | 7.6667 | 0 | 2.6667 | 0 | 0 | 0 | 1.3333 | 0 | 4 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||||||
ABR39684.1 | BVU_RS10225 | BVU_2017 | transcriptional repressor | 0 | 0 | 2 | 0 | 0 | 1.6667 | 0 | 1.3333 | 1 | 2.6667 | 1.6667 | 0 | 2.6667 | 2 | putative iron uptake regulation protein [Phocaeicola vulgatus ATCC 8482] | Blast: Peroxide-responsive repressor PerR | ||||||||||||||
ABR40087.1 | BVU_RS12230 | BVU_2428 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.6667 | 0 | 0 | 0 | ||||||||||||||||
ABR40099.1 | BVU_RS12290 | BVU_2441 | TrkA family potassium uptake protein | 0 | 5 | 0 | 0 | 0 | 0 | 5 | 5.6667 | 0 | 4.3333 | 0 | 3.6667 | 0 | 0 | ||||||||||||||||
ABR40208.1 | BVU_RS12845 | BVU_2551 | RagB/SusD family nutrient uptake outer membrane protein | 2 | 0 | 0 | 0 | 0 | 0 | 2.3333 | 1.6667 | 0 | 0 | 0 | 1.6667 | 1.3333 | 0 |
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Accession | Locus | Locus_old | Name | EC_Number | Function-deposited genome | Glc | Gal | Frc | Man | Rha | Fuc | GluA | Ara | Xylo | Mal | Lac | Sac | aCyclo | Xyn | old name | newest name | info | |||||||
SusC | |||||||||||||||||||||||||||||
ABR38269.1 | BVU_RS02850 | BVU_0561 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 39.666667 | 128.66667 | 1 | 0 | 28 | 0 | 40.333333 | 0 | 0 | 20 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR38271.1 | BVU_RS02860 | BVU_0563 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 34.666667 | 19 | 67.666667 | 43.333333 | 154.66667 | 166.33333 | 66 | 23 | 141 | 139.66667 | 142.33333 | 25 | 24.333333 | 118.33333 | SusC/RagA family TonB-linked outer membrane | |||||||||||
ABR38276.1 | BVU_RS02885 | BVU_0568 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 7 | 0 | 0 | 6.3333333 | 45.666667 | 283 | 0 | 0 | 29 | 16.333333 | 58.666667 | 0 | 0 | 37.666667 | SusC/RagA family TonB-linked outer membrane | |||||||||||
ABR38279.1 | BVU_RS02900 | BVU_0571 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 28.666667 | 25.666667 | 39.333333 | 11 | 118.33333 | 170.66667 | 20.333333 | 19.333333 | 75 | 49.333333 | 120.66667 | 21.666667 | 30.666667 | 133.33333 | SusC/RagA family TonB-linked outer membrane | |||||||||||
ABR38327.1 | BVU_RS03140 | BVU_0619 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 13 | 16.666667 | 2 | 14.333333 | 80.333333 | 65.333333 | 0 | 0 | 46.666667 | 38.333333 | 38.333333 | 0 | 0 | 52.666667 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR37897.1 | BVU_RS00870 | BVU_0169 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6.6666667 | 22.333333 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR38210.1 | BVU_RS02560 | BVU_0500 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 163 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR37768.1 | BVU_RS00200 | BVU_0038 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 20.666667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 942.66667 | SusC/RagA family protein | TonB-dependent receptor | ||||||||||
ABR39652.1 | BVU_RS10035 | BVU_1980 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 3 | 0 | 5 | 0 | 8 | 21 | 0 | 0 | 6 | 1 | 2 | 0 | 0 | 8 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR40207.1 | BVU_RS12840 | BVU_2550 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 11 | 8 | 19 | 9 | 7 | 0 | 14 | 10 | 18 | 0 | 15 | 12 | 11 | 16 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR40233.1 | BVU_RS12975 | BVU_2578 | TonB-dependent receptor | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 20.667 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||
ABR38293.1 | BVU_RS02970 | BVU_0585 | TonB-dependent receptor | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6.6667 | Blast: SusC/RagA family TonB-linked outer membrane protein | RagB/SusD family nutrient uptake outer membrane protein | ||||||||||
ABR38548.1 | BVU_RS04320 | BVU_0851 | putative TonB-linked outer membrane receptor [Phocaeicola vulgatus ATCC 8482] | 51.333333 | 4.6666667 | 17 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 57.333333 | 0 | 0 | ||||||||||||
ABR39023.1 | BVU_RS06755 | BVU_1334 | putative TonB-dependent receptor [Phocaeicola vulgatus ATCC 8482] | 11.333333 | 12.333333 | 12 | 7 | 6.6666667 | 6.6666667 | 7.6666667 | 7.6666667 | 7.3333333 | 3.6666667 | 7.6666667 | 7.3333333 | 8.3333333 | 6.6666667 | ||||||||||||
ABR39710.1 | BVU_RS10350 | BVU_2045 | putative TonB-dependent outer membrane protein [Phocaeicola vulgatus ATCC 8482] | 1 | 0 | 3 | 15 | 0 | 7.3333333 | 0 | 0 | 1.3333333 | 0 | 0 | 0 | 0 | 0 | ||||||||||||
ABR40378.1 | BVU_RS13725 | BVU_2728 | TonB-dependent outer membrane receptor [Phocaeicola vulgatus ATCC 8482] | 107.33333 | 44 | 56.333333 | 15 | 0 | 0 | 1.3333333 | 11.666667 | 22.333333 | 2.6666667 | 0 | 55 | 9 | 0 | ||||||||||||
ABR40726.1 | BVU_RS15590 | BVU_3092 | putative TonB-dependent outer membrane protein [Phocaeicola vulgatus ATCC 8482] | 71.333333 | 40.666667 | 79.666667 | 41.666667 | 34 | 69 | 45.666667 | 45 | 71.333333 | 33.333333 | 60 | 37.666667 | 45 | 51.333333 | ||||||||||||
ABR40729.1 | BVU_RS15605 | BVU_3095 | TonB-dependent outer membrane receptor [Phocaeicola vulgatus ATCC 8482] | 12.333333 | 5.6666667 | 8 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 22.333333 | 0 | 0 | ||||||||||||
ABR40742.1 | BVU_RS15675 | BVU_3108 | TonB-dependent receptor [Phocaeicola vulgatus ATCC 8482] | 27 | 17.666667 | 23.333333 | 9 | 0 | 10.666667 | 4 | 18 | 13.333333 | 6 | 12.666667 | 12.666667 | 15 | 16 | ||||||||||||
ABR38215.1 | BVU_RS02580 | BVU_0505 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 3 | 0 | 0 | 31.333333 | 103.33333 | 0 | 0 | 33.333333 | 26.666667 | 37.666667 | 0 | 0 | 75 | TonB-dependent receptor | |||||||||||
ABR38538.1 | BVU_RS04270 | BVU_0841 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11 | TonB-dependent receptor | |||||||||||
ABR38641.1 | BVU_RS04805 | BVU_0946 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 24.333333 | 26.333333 | 0 | 0 | 30.666667 | 16.333333 | 48.333333 | 0 | 0 | 71 | TonB-dependent receptor | |||||||||||
ABR38654.1 | BVU_RS04870 | BVU_0959 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 56 | 82 | 33.666667 | 0 | 137 | 258.33333 | 15 | 23.333333 | 215 | 202.66667 | 292.33333 | 1.3333333 | 27 | 393 | TonB-dependent receptor | |||||||||||
ABR41311.1 | BVU_RS18560 | BVU_3700 | putative outer membrane protein [Phocaeicola vulgatus ATCC 8482] | 9.3333333 | 0 | 2.3333333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13 | 0 | 0 | TonB-dependent receptor | |||||||||||
ABR41321.1 | BVU_RS18605 | BVU_3710 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 40 | 0 | 0 | 0 | 0 | 219 | 0 | 0 | 0 | 0 | 0 | TonB-dependent receptor | |||||||||||
ABR40359.1 | BVU_RS13620 | BVU_2708 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 16 | 3 | 7 | 2 | 0 | 0 | 0 | 2 | 5 | 0 | 4 | 10 | 0 | 0 | TonB-dependent receptor | |||||||||||
ABR40344.1 | BVU_RS13540 | BVU_2692 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 33 | 1 | 18 | 6 | 0 | 0 | 19 | 29 | 19 | 0 | 4 | 7 | 6 | 0 | TonB-dependent receptor | |||||||||||
ABR40342.1 | BVU_RS13530 | BVU_2690 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 15 | TonB-dependent receptor | |||||||||||
ABR40091.1 | BVU_RS12245 | BVU_2432 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 10 | 13 | 0 | 0 | 13 | 6 | 8 | 0 | 0 | 5 | TonB-dependent receptor | |||||||||||
ABR39387.1 | BVU_RS08690 | BVU_1711 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 26 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 | TonB-dependent receptor | |||||||||||
ABR39343.1 | BVU_RS08450 | BVU_1662 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 92 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 24 | 0 | 0 | TonB-dependent receptor | |||||||||||
ABR38203.1 | BVU_RS02525 | BVU_0493 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 7 | 54 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 63 | TonB-dependent receptor | |||||||||||
ABR38107.1 | BVU_RS01980 | BVU_0389 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 40 | TonB-dependent receptor | |||||||||||
ABR37856.1 | BVU_RS00640 | BVU_0126 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 11 | 21 | 0 | 0 | 6 | 5 | 12 | 0 | 0 | 20 | TonB-dependent receptor | |||||||||||
ABR41747.1 | BVU_RS20780 | BVU_4145 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 107.33333 | 50.666667 | 36.666667 | 21.333333 | 16.333333 | 4.3333333 | 9 | 22 | 71.333333 | 12 | 31.333333 | 8 | 13.666667 | 3 | TonB-dependent receptor | |||||||||||
ABR38773.1 | BVU_RS05475 | BVU_1082 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 5.3333333 | 4.6666667 | 0 | 0 | 0 | 0 | 3.3333333 | 0 | 0 | 11.333333 | TonB-dependent receptor | |||||||||||
ABR38848.1 | BVU_RS05850 | BVU_1157 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 3.6666667 | 0 | 0 | 15 | TonB-dependent receptor | |||||||||||
ABR39069.1 | BVU_RS06985 | BVU_1380 | outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 1 | 0 | 0 | 0 | 0 | 0 | 200 | 0 | 0 | 75 | 1.3333333 | 0 | 222 | 21 | TonB-dependent receptor | |||||||||||
ABR39516.1 | BVU_RS09330 | BVU_1841 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 59.333333 | 57.333333 | 94.666667 | 52.333333 | 62.333333 | 46.666667 | 130 | 42.666667 | 98.333333 | 48 | 87.333333 | 79.666667 | 63.333333 | 96.333333 | TonB-dependent receptor | |||||||||||
ABR39518.1 | BVU_RS09340 | BVU_1843 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 16 | 11.333333 | 14 | 7 | 1.6666667 | 20 | 16 | 4.3333333 | 4.6666667 | 0 | 8 | 8 | 4.6666667 | 0 | TonB-dependent receptor | |||||||||||
ABR39522.1 | BVU_RS09360 | BVU_1847 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 37 | 7 | 33.666667 | 6.6666667 | 2.3333333 | 10.666667 | 14.333333 | 21.333333 | 12.666667 | 0 | 3.6666667 | 12 | 18 | 0 | TonB-dependent receptor | |||||||||||
ABR39527.1 | BVU_RS09385 | BVU_1852 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 50.666667 | 58.333333 | 60.666667 | 29.333333 | 15 | 44.666667 | 51.333333 | 26.666667 | 37 | 12.333333 | 30.666667 | 35 | 53.333333 | 53.333333 | TonB-dependent receptor | |||||||||||
ABR39529.1 | BVU_RS09395 | BVU_1854 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 277.33333 | 85 | 342 | 118 | 134.33333 | 178.33333 | 214.66667 | 168.33333 | 167.66667 | 54.666667 | 176 | 230.33333 | 234 | 265.66667 | TonB-dependent receptor | |||||||||||
SusD | |||||||||||||||||||||||||||||
ABR37767.1 | BVU_RS00195 | BVU_0037 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 355.67 | ||||||||||||
ABR37855.1 | BVU_RS00635 | BVU_0125 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | ||||||||||||
ABR38108.1 | BVU_RS01985 | BVU_0390 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14 | ||||||||||||
ABR38202.1 | BVU_RS02520 | BVU_0492 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 8.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10.667 | ||||||||||||
ABR38209.1 | BVU_RS02555 | BVU_0499 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 38.667 | ||||||||||||
ABR38216.1 | BVU_RS02585 | BVU_0506 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 11.667 | 55.667 | 0 | 0 | 7.6667 | 20.667 | 15.333 | 0 | 0 | 32.333 | ||||||||||||
ABR38539.1 | BVU_RS04275 | BVU_0842 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | ||||||||||||
ABR38642.1 | BVU_RS04810 | BVU_0947 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8.3333 | ||||||||||||
ABR38655.1 | BVU_RS04875 | BVU_0960 | RagB/SusD family nutrient uptake outer membrane protein | 9.3333 | 23.333 | 1.3333 | 6.6667 | 26.667 | 39.667 | 13.333 | 1.3333 | 30.667 | 42 | 53 | 0.6667 | 0 | 70.667 | ||||||||||||
ABR38774.1 | BVU_RS05480 | BVU_1083 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||
ABR39068.1 | BVU_RS06980 | BVU_1379 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 121.33 | 0 | 0 | 63.667 | 0 | 0 | 103.67 | 3 | ||||||||||||
ABR39515.1 | BVU_RS09325 | BVU_1840 | RagB/SusD family nutrient uptake outer membrane protein | 22.333 | 35.333 | 24.333 | 21 | 13.333 | 8.3333 | 51.667 | 9.6667 | 36.667 | 30 | 41.333 | 27.333 | 15.667 | 35.333 | ||||||||||||
ABR39519.1 | BVU_RS09345 | BVU_1844 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||
ABR39523.1 | BVU_RS09365 | BVU_1848 | RagB/SusD family nutrient uptake outer membrane protein | 11.667 | 5.3333 | 11.667 | 0 | 1 | 0 | 5 | 8.6667 | 2.3333 | 0 | 0 | 3.3333 | 7 | 0 | ||||||||||||
ABR39528.1 | BVU_RS09390 | BVU_1853 | RagB/SusD family nutrient uptake outer membrane protein | 11 | 21.333 | 11.667 | 6.3333 | 0 | 5 | 8.3333 | 10 | 3.3333 | 0 | 5.6667 | 6.6667 | 10 | 5.6667 | ||||||||||||
ABR39530.1 | BVU_RS09400 | BVU_1855 | RagB/SusD family nutrient uptake outer membrane protein | 66 | 23.333 | 65 | 29.333 | 33 | 49 | 53.333 | 46.667 | 30.333 | 13.667 | 39.333 | 50.333 | 49.667 | 64 | ||||||||||||
ABR40087.1 | BVU_RS12230 | BVU_2428 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.6667 | 0 | 0 | 0 | ||||||||||||
ABR40345.1 | BVU_RS13545 | BVU_2693 | RagB/SusD family nutrient uptake outer membrane protein | 14.333 | 0 | 6.3333 | 6 | 0 | 0 | 9.6667 | 11 | 4 | 1.6667 | 4 | 4 | 3 | 0 | ||||||||||||
ABR38642.1 | BVU_RS04810 | BVU_0947 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 1.3333333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8.3333333 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||
ABR38655.1 | BVU_RS04875 | BVU_0960 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 9.3333333 | 23.333333 | 1.3333333 | 6.6666667 | 26.666667 | 39.666667 | 13.333333 | 1.3333333 | 30.666667 | 42 | 53 | 0.6666667 | 0 | 70.666667 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||
ABR38293.1 | BVU_RS02970 | BVU_0585 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6.6666667 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||
ABR39068.1 | BVU_RS06980 | BVU_1379 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 121.33333 | 0 | 0 | 63.666667 | 0 | 0 | 103.66667 | 3 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||
ABR41746.1 | BVU_RS20775 | BVU_4144 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 51.666667 | 29.666667 | 21.333333 | 17 | 6.3333333 | 2.6666667 | 6.6666667 | 19.333333 | 30.333333 | 10.333333 | 22.666667 | 8.3333333 | 9.6666667 | 1.3333333 | SusD family outer membrane lipoprotein NanU | |||||||||||
ABR38270.1 | BVU_RS02855 | BVU_0562 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 6 | 7 | 10 | 12 | 54 | 44 | 19 | 3 | 27 | 51 | 32 | 7 | 8 | 28 | SusD/RagB family nutrient-binding outer membrane lipoprotein | |||||||||||
ABR38277.1 | BVU_RS02890 | BVU_0569 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 5 | 69 | 3 | 0 | 1 | 0 | 7 | 0 | 0 | 3 | SusD/RagB family nutrient-binding outer membrane | |||||||||||
ABR38280.1 | BVU_RS02905 | BVU_0572 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 5 | 5 | 9 | 3 | 55 | 62 | 19 | 3 | 9 | 25 | 32 | 3 | 4 | 34 | SusD/RagB family nutrient-binding outer membrane | |||||||||||
ABR38326.1 | BVU_RS03135 | BVU_0618 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 3 | 4 | 0 | 3 | 12 | 9 | 0 | 0 | 8 | 11 | 8 | 0 | 0 | 8 | SusD/RagB family nutrient-binding outer membrane lipoprotein | |||||||||||
ABR38745.1 | BVU_RS05335 | BVU_1054 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 23 | 30 | 0 | 0 | 34 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR39688.1 | BVU_RS10245 | BVU_2021 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 7 | 7 | 7 | 26 | 8 | 23 | 2 | 17 | 36 | 30 | 10 | 5 | 31 | SusD/RagB family nutrient-binding outer membrane lipoprotein | |||||||||||
ABR40090.1 | BVU_RS12240 | BVU_2431 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 6 | 6 | 2 | 0 | 4 | 12 | 6 | 0 | 0 | 3 | SusD family outer membrane lipoprotein NanU | |||||||||||
TonB | |||||||||||||||||||||||||||||
ABR39611.1 | BVU_RS09820 | BVU_1938 | outer membrane protein TonB [Phocaeicola vulgatus ATCC 8482] | 38 | 31 | 34 | 28 | 31.333333 | 37.333333 | 29.666667 | 28.666667 | 39.666667 | 36.333333 | 41 | 23.666667 | 29.666667 | 37.666667 | ||||||||||||
SusE | |||||||||||||||||||||||||||||
ABR39067.1 | BVU_RS06975 | BVU_1378 | hypothetical protein BVU_1378 [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 38 | 0 | 0 | 17 | 0 | 0 | 40 | 0 | SusE domain-containing protein | |||||||||||
GH family | |||||||||||||||||||||||||||||
ABR41736.1 | BVU_RS20725 | BVU_4134 | glycoside hydrolase family 2, candidate beta-galactosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 3.6666667 | 3 | 0 | 7 | 4.6666667 | 7 | 0 | 2.3333333 | 4 | 4.3333333 | 0 | 0 | 3.6666667 | ||||||||||||
ABR39444.1 | BVU_RS08985 | BVU_1768 | glycoside hydrolase family 2, candidate beta-glycosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0.6666667 | 1.3333333 | 3.3333333 | 0 | 0 | 1 | 1.3333333 | 1.3333333 | 1.3333333 | 1.6666667 | 0.6666667 | 0 | ||||||||||||
ABR38315.1 | BVU_RS03080 | BVU_0607 | glycoside hydrolase family 2, candidate beta-galactosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 2.6666667 | 0 | 0 | 15 | 31.666667 | 11 | 2 | 9.3333333 | 5.3333333 | 8.3333333 | 0 | 0 | 19.666667 | ||||||||||||
ABR38111.1 | BVU_RS02000 | BVU_0393 | glycoside hydrolase family 2, candidate beta-glycosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 2.3333333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | ||||||||||||
ABR38690.1 | BVU_RS05055 | BVU_0997 | glycoside hydrolase family 2, candidate beta-galactosidase [Phocaeicola vulgatus ATCC 8482] | 1.6666667 | 6 | 0 | 4.3333333 | 5 | 10.666667 | 5.6666667 | 7.3333333 | 6 | 16.666667 | 15.333333 | 2.6666667 | 4.6666667 | 26.333333 | ||||||||||||
ABR37861.1 | BVU_RS00665 | BVU_0131 | glycoside hydrolase family 3, candidate beta-glycosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||
ABR37771.1 | BVU_RS00215 | BVU_0041 | glycoside hydrolase family 10, candidate beta-xylanase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 40.666667 | ||||||||||||
ABR39071.1 | BVU_RS06995 | BVU_1382 | glycoside hydrolase family 13, candidate alpha-glycosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4.3333333 | 0 | 0 | 6 | 0 | ||||||||||||
ABR40671.1 | BVU_RS15290 | BVU_3034 | glycoside hydrolase family 13, candidate pullulanase [Phocaeicola vulgatus ATCC 8482] | 1.3333333 | 0 | 0 | 4.6666667 | 0 | 0 | 4.3333333 | 6 | 2 | 0 | 0 | 2.3333333 | 6.3333333 | 0 | ||||||||||||
ABR41594.1 | BVU_RS20000 | BVU_3991 | glycoside hydrolase family 13, candidate alpha-glycosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 1.6666667 | 1.6666667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||
ABR38325.1 | BVU_RS03130 | BVU_0617 | glycoside hydrolase family 18 [Phocaeicola vulgatus ATCC 8482] | 1.3333333 | 4 | 0 | 1.3333333 | 10.666667 | 13.666667 | 0 | 0 | 6.3333333 | 9.3333333 | 5.3333333 | 0 | 0 | 9 | ||||||||||||
ABR41738.1 | BVU_RS20735 | BVU_4136 | glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482] | 1.6666667 | 1 | 0 | 0 | 2.3333333 | 0 | 0 | 2 | 0 | 0 | 3.3333333 | 0 | 0 | 1.3333333 | ||||||||||||
ABR41740.1 | BVU_RS20745 | BVU_4138 | glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482] | 6.6666667 | 20.333333 | 7 | 27 | 50.333333 | 41 | 22.333333 | 18.666667 | 29.333333 | 24.666667 | 35.333333 | 9.3333333 | 15.666667 | 32.666667 |
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Glucose | Fructose | Galactose | Xylose | Mannose | Rhamnose | |||||||||||||||||||||||||||||||
time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | |||||||||||||||||||
4.58 | 0.15 | 1.1203333333333333E9 | 4 | 0.09 | 521000000 | 6.67 | 0.25 | 1580000000 | 6.17 | 0.19000000000000128 | 2.4486666666666665E9 | 5.17 | 0.21 | 1390000000 | 5.42 | 0.1 | 772000000 | |||||||||||||||||||
6.58 | 0.41 | 3.448E9 | 6.58 | 0.33 | 2000000000 | 7.92 | 0.35 | 2.78E9 | 7.83 | 0.41999999999999815 | 5.276666666666667E9 | 6.83 | 0.4 | 2.91E9 | 9.33 | 0.19 | 1670000000 | |||||||||||||||||||
7.67 | 0.61 | 5.814666666666667E9 | 7.58 | 0.48 | 3.8E9 | 9.42 | 0.58 | 5.17E9 | 9.08 | 0.609999999999992 | 8.04E9 | 7.67 | 0.58 | 4.26E9 | 11.5 | 0.31 | 2.83E9 | |||||||||||||||||||
growth rate | 0.14653709911646146 | 1.4753118171577477E9 | growth rate | 0.10576960650228594 | 8.476925481614628E8 | growth rate | 0.12109890109890109 | 1.314945054945055E9 | growth rate | 0.14402246171653502 | 1.909826740287706E9 | growth rate | 0.14329845951066805 | 1.1154337260070848E9 | growth rate | 0.03316339965662163 | 3.2549005150675696E8 | |||||||||||||||||||
doubling time/ generation time | 1.6023768675864378 | 1.3265166808559152 | doubling time/ generation time | 1.5695576883849747 | 1.219405465139072 | doubling time/ generation time | 2.299508468353846 | 1.6057437936192966 | doubling time/ generation time | 1.833804417892819 | 1.7508905006046354 | doubling time/ generation time | 1.6861384493209302 | 1.5441012175668787 | doubling time/ generation time | 3.673275824080056 | 3.2027771253260533 | |||||||||||||||||||
Arabinose | Lactose | Maltose | Sucrose | α-Cyclodextrin | Xylan | |||||||||||||||||||||||||||||||
time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | |||||||||||||||||||
5 | 0.1783333333333322 | 1.9893333333333333E9 | 7.08 | 0.14 | 1370000000 | 7.83 | 0.22 | 1990000000 | 6.58 | 0.24 | 1680000000 | 6.25 | 0.23 | 1700000000 | 5.33 | 0.1183333333333314 | 1349000000 | |||||||||||||||||||
5.92 | 0.2600000000000084 | 2.86E9 | 8.92 | 0.27 | 2.71E9 | 9.75 | 0.35 | 3.27E9 | 8 | 0.41 | 3.18E9 | 7.25 | 0.36 | 2.92E9 | 8.17 | 0.21333333333333573 | 3.4333333333333335E9 | |||||||||||||||||||
7.33 | 0.6033333333333187 | 5.46E9 | 9.75 | 0.32 | 3.47E9 | 12.33 | 0.72 | 5.16E9 | 8.83 | 0.5 | 4.48E9 | 8.33 | 0.53 | 5.61E9 | 10.58 | 0.27999999999999137 | 4.746666666666667E9 | |||||||||||||||||||
growth rate | 0.18751159732474265 | 1.5191890343764875E9 | growth rate | 0.06795258582216115 | 7.768534552011E8 | growth rate | 0.11290891974582257 | 7.060092570800973E8 | growth rate | 0.11600453152758824 | 1.2241561317232678E9 | growth rate | 0.14440611138491863 | 1.8879374075899456E9 | growth rate | 0.030871958979506266 | 6.49731152953215E8 | |||||||||||||||||||
doubling time/ generation time | 1.3924958103650102 | 1.6225556756447983 | doubling time/ generation time | 2.522269109716189 | 2.0627877094170746 | doubling time/ generation time | 2.658788689052177 | 3.2912588920949433 | doubling time/ generation time | 2.2872828359078397 | 1.6037173911119764 | doubling time/ generation time | 1.7365594339264263 | 1.2117891070480173 | doubling time/ generation time | 4.569426893646702 | 3.3856732885052536 | |||||||||||||||||||
Fucose | Glucuronicacid | |||||||||||||||||||||||||||||||||||
time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | |||||||||||||||||||||||||||||||
4.75 | 0.05499999999999764 | 1.1123333333333333E9 | 17.75 | 0.10499999999999954 | 2.9586666666666665E9 | |||||||||||||||||||||||||||||||
10 | 0.08333333333333155 | 1.7913333333333333E9 | 25.5 | 0.19000000000000128 | 4.396666666666667E9 | |||||||||||||||||||||||||||||||
15.83 | 0.13166666666666696 | 2.4306666666666665E9 | 34.5 | 0.256666666666668 | 5.72E9 | |||||||||||||||||||||||||||||||
growth rate | 0.006944527332683249 | 1.1881216391833381E8 | growth rate | 0.009010771815396881 | 1.643802747307046E8 | |||||||||||||||||||||||||||||||
doubling time/ generation time | 8.79670954762365 | 10.234054194448232 | doubling time/ generation time | 14.26320029368587 | 18.294106352487354 | |||||||||||||||||||||||||||||||
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Calculation Example | ||||||||||||||||||||||||||||||||||||||||||||||
Propanoate (Prop) | Succinate (Succ) | Acetate (Acet) via Formate (Form) | Acetate (Acet) via Ferredoxin (Fd) | Fumarate (Fuma) | Total | |||||||||||||||||||||||||||||||||||||||||
Total reducing equivalents | ||||||||||||||||||||||||||||||||||||||||||||||
ATP | NADH | Na+ | Fd | ATP | NADH | Fd | ATP | NADH | Fd | ATP | NADH | Fd | ATP | NADH | Fd | ATP | NADH | Na+ | Fd | coupling ratio | ATP Gain per depleted substrate [mM/mM] | |||||||||||||||||||||||||
Needed | Formed | Needed | Formed | formed | Formed | Needed | Formed | Needed | Formed | Formed | Needed | Formed | Needed | Formed | Formed | Needed | Formed | Needed | Formed | Formed | Needed | Formed | Needed | Formed | Formed | Needed | Formed | Needed | Formed | formed | Formed | ATP Gain | NADH Gain | NADH to ions | Na+ | Fd to ions | 3.3 | 4.3 | Total ATP (3.3) | Total ATP (4.3) | ||||||
Glc | 0 | 0 | 0 | 0 | 0 | 0 | 0.7185354691075516 | 1.4370709382151032 | 1.4370709382151032 | 1.4370709382151032 | 0 | 0.5425883549453343 | 1.627765064836003 | 0 | 1.0851767098906686 | 0 | 0.7037884566488687 | 2.111365369946606 | 0 | 1.4075769132977374 | 0.7037884566488687 | 0.03508771929824561 | 0.07017543859649122 | 0.07017543859649122 | 0.07017543859649122 | 0 | Glc | 2.0000000000000004 | 5.246376811594203 | 1.5072463768115945 | 4.703788456648869 | 0 | 0.7037884566488687 | Glc | 3.2463768115942027 | 3.1965420798372746 | 3.1965420798372746 | 0 | 1.4075769132977374 | 4.604118993135012 | 1.3951875736772765 | 1.0707253472407006 | 1.9202007471001126 | 1.785971733367959 | ||
Gal | 0.06876427302715048 | 0.18062715778997662 | 0.2493914308171271 | 0.13752854605430095 | 0.025665661291474785 | 0 | 1.1031464095407257 | 2.2062928190814515 | 2.2062928190814515 | 2.2062928190814515 | 0 | 0.5653387465110378 | 1.6960162395331133 | 0 | 1.1306774930220755 | 0 | 0.2090839888353211 | 0.6272519665059633 | 0 | 0.4181679776706422 | 0.2090839888353211 | 0.05366658208576503 | 0.10733316417153006 | 0.10733316417153006 | 0.10733316417153006 | 0 | Gal (D) | 2 | 4.817521347082035 | 2.5630174140701087 | 4.209083988835321 | 0.025665661291474785 | 0.2090839888353211 | Gal | 2.8175213470820353 | 1.6460665747652121 | 1.6460665747652121 | 0.025665661291474785 | 0.4181679776706422 | 2.0899002137273293 | 0.6333030950688877 | 0.48602330551798356 | 0.7626279366950014 | 0.7300792852335928 | ||
Fru | 0 | 0 | 0 | 0 | 0 | 0 | 0.8419886442321008 | 1.6839772884642017 | 1.6839772884642017 | 1.6839772884642017 | 0 | 0.7291233901121729 | 2.1873701703365187 | 0 | 1.4582467802243457 | 0 | 0.354521534413516 | 1.0635646032405481 | 0 | 0.709043068827032 | 0.354521534413516 | 0.07436643124221022 | 0.14873286248442044 | 0.14873286248442044 | 0.14873286248442044 | 0 | Fru | 2 | 5.083644924525689 | 1.832710150948622 | 4.354521534413516 | 0 | 0.354521534413516 | Fru | 3.0836449245256894 | 2.521811383464894 | 2.521811383464894 | 0 | 0.709043068827032 | 3.230854452291926 | 0.9790468037248261 | 0.7513615005330061 | 1.7172969437744021 | 1.6210545258240658 | ||
Man | 0.03476669716376944 | 0.08153019285659571 | 0.11629689002036515 | 0.06953339432753888 | 0.022769898634712626 | 0 | 0.8296150327257372 | 1.6592300654514744 | 1.6592300654514744 | 1.6592300654514744 | 0 | 0.5880779787458653 | 1.7642339362375958 | 0 | 1.1761559574917306 | 0 | 0.520655922302766 | 1.561967766908298 | 0 | 1.041311844605532 | 0.520655922302766 | 0.026884369061862198 | 0.053768738123724395 | 0.053768738123724395 | 0.053768738123724395 | 0 | Man | 2 | 5.120730699577688 | 1.829295693595564 | 4.520655922302766 | 0.022769898634712626 | 0.520655922302766 | Man | 3.1207306995776882 | 2.691360228707202 | 2.691360228707202 | 0.022769898634712626 | 1.041311844605532 | 3.7554419719474468 | 1.1380127187719535 | 0.8733585981273132 | 1.3250802490614175 | 1.2427348448776572 | ||
Ara | 0 | 0 | 0 | 0 | 0 | 0 | 1.9833592149838573 | 3.9667184299677145 | 3.9667184299677145 | 3.9667184299677145 | 0 | 1.065506312824684 | 3.1965189384740516 | 0 | 2.131012625649368 | 0 | 1.8883806809513293 | 5.665142042853988 | 0 | 3.7767613619026585 | 1.8883806809513293 | 0.0627537912401298 | 0.1255075824802596 | 0.1255075824802596 | 0.1255075824802596 | 0 | Ara | 5 | 12.953886993776015 | 4.092226012447974 | 11.888380680951329 | 0 | 1.8883806809513293 | Ara | 7.953886993776015 | 7.7961546685033545 | 7.7961546685033545 | 0 | 3.7767613619026585 | 11.572916030406013 | 3.506944251638186 | 2.6913758210246543 | 2.101686420339387 | 1.952127539419313 | ||
Xyl | 0.32724866186551377 | 0.8325217895794351 | 1.159770451444949 | 0.6544973237310275 | 0.14922419601710615 | 0 | 2.1912003097463737 | 4.382400619492747 | 4.382400619492747 | 4.382400619492747 | 0 | 0.23558751981811069 | 0.7067625594543321 | 0 | 0.47117503963622137 | 0 | 2.1694012415803727 | 6.508203724741118 | 0 | 4.3388024831607455 | 2.1694012415803727 | 0.07656226698962906 | 0.15312453397925813 | 0.15312453397925813 | 0.15312453397925813 | 0 | Xyl | 4.999999999999999 | 12.583013227246889 | 5.6952956049169545 | 12.16940124158037 | 0.14922419601710615 | 2.1694012415803727 | Xyl | 7.58301322724689 | 6.474105636663416 | 6.474105636663416 | 0.14922419601710615 | 4.3388024831607455 | 10.962132315841266 | 3.3218582775276566 | 2.5493330967072714 | 1.9374321706816113 | 1.8001801968891895 | ||
Rha | 0 | 0 | 0 | 0 | 0 | 0 | 0.10320781032078102 | 0.20641562064156205 | 0.4883587168758716 | 0.20641562064156205 | 0 | 0.11308693630869363 | 0.3392608089260809 | 0.19584395629939563 | 0.22617387261738725 | 0 | 0.7837052533705254 | 2.3511157601115764 | 1.3572207577870758 | 1.5674105067410509 | 0.7837052533705254 | 0 | 0 | 0 | 0 | 0 | Rha | 1 | 2.8967921896792195 | 2.041423430962343 | 2.7837052533705253 | 0 | 0.7837052533705254 | Rha | 1.8967921896792195 | 0.7422818224081822 | 0.7422818224081822 | 0 | 1.5674105067410509 | 2.3096923291492333 | 0.6999067664088586 | 0.537137750964938 | 1.8829915530419967 | 1.7649598957875894 | ||
Fuc | 0.03319846457101359 | 0.08067226890756302 | 0.12993735472166842 | 0.06639692914202718 | 0.025123162378064338 | 0 | 0.36611681709720917 | 0.7322336341944183 | 1.3300291731507414 | 0.7322336341944183 | 0 | 0.037452017844174706 | 0.11235605353252412 | 0.06115165473596846 | 0.07490403568834941 | 0 | 0.5579416951965971 | 1.6738250855897912 | 0.9110071999170037 | 1.1158833903931942 | 0.5579416951965971 | 0.005291005291005291 | 0.010582010582010581 | 0.01922116402116402 | 0.010582010582010581 | 0 | Fuc | 0.9999999999999998 | 2.6096690528063076 | 2.4513465465465463 | 2.5579416951965968 | 0.025123162378064338 | 0.5579416951965971 | Fuc | 1.6096690528063078 | 0.10659514865005049 | 0.10659514865005049 | 0.025123162378064338 | 1.1158833903931942 | 1.247601701421309 | 0.3780611216428209 | 0.2901399305630951 | 1.4634574007174246 | 1.3987258192284158 | ||
Mal | 0.28469544861056906 | 0.9020673949548396 | 1.2816613264355985 | 0.7591878629615175 | 0.23671439948743658 | 0 | 1.255390543440788 | 3.347708115842101 | 3.347708115842101 | 3.347708115842101 | 0 | 0.2992435650883104 | 1.1969742603532416 | 0 | 0.7979828402354944 | 0 | 1.1076712068975678 | 4.430684827590271 | 0 | 2.9537898850601807 | 1.4768949425300903 | 0.05299923596276489 | 0.14133129590070637 | 0.14133129590070637 | 0.14133129590070637 | 0 | Mal | 3 | 10.01876589464116 | 4.770700738178406 | 9.476894942530091 | 0.23671439948743658 | 1.4768949425300903 | Mal | 7.0187658946411595 | 4.706194204351685 | 4.706194204351685 | 0.23671439948743658 | 2.9537898850601807 | 7.896698488899302 | 2.3929389360300917 | 1.8364415090463495 | 6.554400394412099 | 6.166850314959445 | ||
Suc | 0 | 0 | 0 | 0 | 0 | 0 | 1.5101780546426644 | 3.020356109285329 | 3.020356109285329 | 3.020356109285329 | 0 | 1.0661696178937559 | 3.1985088536812674 | 0 | 2.1323392357875117 | 0 | 1.3565507431206156 | 4.0696522293618465 | 0 | 2.7131014862412313 | 1.3565507431206156 | 0.06710158434296365 | 0.1342031686859273 | 0.1342031686859273 | 0.1342031686859273 | 0 | Suc | 4 | 10.422720361014369 | 3.154559277971256 | 9.356550743120616 | 0 | 1.3565507431206156 | Suc | 6.422720361014369 | 6.20199146514936 | 6.20199146514936 | 0 | 2.7131014862412313 | 8.91509295139059 | 2.7015433186032096 | 2.0732774305559514 | 6.354223654094362 | 5.916693338545896 | ||
Lac | 0.35858379777175686 | 0.8888509982112168 | 1.2474347959829737 | 0.7171675955435137 | 0.1869003951040537 | 0 | 1.6681080537227586 | 3.336216107445517 | 3.336216107445517 | 3.336216107445517 | 0 | 0.41745154042094823 | 1.2523546212628447 | 0 | 0.8349030808418965 | 0 | 1.488108609853116 | 4.464325829559348 | 0 | 2.976217219706232 | 1.488108609853116 | 0.06774799823142057 | 0.13549599646284113 | 0.13549599646284113 | 0.13549599646284113 | 0 | Lac | 4 | 10.077243552941768 | 4.7191468998913315 | 9.488108609853116 | 0.1869003951040537 | 1.488108609853116 | Lac | 6.077243552941768 | 4.7689617099617845 | 4.7689617099617845 | 0.1869003951040537 | 2.976217219706232 | 7.9320793247720704 | 2.403660401446082 | 1.8446696104121094 | 5.477647535094474 | 5.116606478019 | ||
Cyclo | 0.6719379726088748 | 1.9046203759737927 | 2.625166165751855 | 1.4410915795561239 | 0.25701699336039335 | 0 | 4.992889944685641 | 10.70814859443158 | 10.70814859443158 | 10.70814859443158 | 0 | 2.020226268491036 | 6.499106724874361 | 0 | 4.332737816582907 | 0 | 3.3867943028400425 | 10.895382350311992 | 0 | 7.263588233541328 | 3.631794116770664 | 0.11863487231401851 | 0.25443377588806615 | 0.25443377588806615 | 0.25443377588806615 | 0 | Cyclo | 11.190483360939613 | 30.261691821479793 | 13.587748536071501 | 27.63179411677067 | 0.25701699336039335 | 3.631794116770664 | Cyclo | 19.07120846054018 | 14.04404558069917 | 14.04404558069917 | 0.25701699336039335 | 7.263588233541328 | 21.56465080760089 | 6.534742668969967 | 5.015035071535091 | 9.259959611844575 | 8.710383034786979 | ||
Xylan | 1.3349739036112693 | 3.39617848073291 | 4.731152384344179 | 2.6699478072225387 | 0.608743230100898 | 0 | 3.6092418622334046 | 7.218483724466809 | 7.218483724466809 | 7.218483724466809 | 0 | 1.5007316780249518 | 4.502195034074855 | 0 | 3.0014633560499036 | 0 | 5.2026553065971886 | 15.607965919791567 | 0 | 10.405310613194377 | 5.2026553065971886 | 0.0023972495331871253 | 0.0047944990663742505 | 0.0047944990663742505 | 0.0047944990663742505 | 0 | Xylan | 11.65 | 30.729617658132515 | 11.954430607877363 | 28.50265530659719 | 0.608743230100898 | 5.2026553065971886 | Xylan | 19.079617658132513 | 16.548224698719828 | 16.548224698719828 | 0.608743230100898 | 10.405310613194377 | 27.562278542015104 | 8.352205618792457 | 6.40983221907328 | 19.74614767465155 | 18.347976229648378 | ||
GlcA | 0 | 0 | 0 | 0 | 0 | 0 | 0.06371037156550767 | 0.0955655573482615 | 0.191131114696523 | 0.06371037156550767 | 0 | 0 | 0 | 0 | 0 | 0 | 0.9677572880133714 | 3.8710291520534854 | 1.9355145760267427 | 1.9355145760267427 | 1.9355145760267427 | 7.750524077500686E-4 | 0.0011625786116251028 | 0.0023251572232502057 | 7.750524077500686E-4 | 0 | GlcA | 1.032242711986629 | 3.967757288013372 | 2.128970847946516 | 3.935514576026743 | 0 | 1.9355145760267427 | GlcA | 2.935514576026743 | 1.8065437280802272 | 1.8065437280802272 | 0 | 3.8710291520534854 | 5.677572880133713 | 1.7204766303435495 | 1.3203657860776077 | 3.467433202255791 | 3.169460640775832 | ||
% | Succ | Acet | Fum | Acet via Form | Pro | Acet via Fd | Total | Factor | Acet via Form | Acet via Fd | Acet total | Succ | Acet | Fuma | Prop | Total | %-portion catabolism: | 0.413696889176687 | Glucose | C-normalized | Glc | 0.32003345785001874 | 0.2976619555613265 | |||||||||||||||||||||||
Glc | 28.26 | 49.02 | 1.38 | 21.34 | 0 | 27.680000000000003 | 78.66 | 1.2712941774726672 | 27.129417747266718 | 35.189422832443434 | 62.318840579710155 | 35.92677345537758 | 62.31884057971015 | 1.7543859649122806 | 0 | 100 | 0.422699298554436 | Fructose | Gal | 0.12710465611583358 | 0.12167988087226546 | |||||||||||||||||||||||||
Gal | 43.00197823936697 | 30.187932739861527 | 2.091988130563798 | 22.037586547972303 | 2.6805143422354107 | 8.150346191889223 | 77.9624134520277 | 1.2826693732555188 | 28.266937325551886 | 10.454199441766054 | 38.721136767317944 | 55.157320477036286 | 38.72113676731794 | 2.6833291042882514 | 3.4382136513575237 | 100 | 0.22099876405756824 | Galactose | Fru | 0.2862161572957337 | 0.270175754304011 | |||||||||||||||||||||||||
Fru | 30.851981529405798 | 39.70670320190795 | 2.7249200791596895 | 26.716395189526565 | 0 | 12.990308012381384 | 73.28360481047343 | 1.3645616950560864 | 36.45616950560864 | 17.726076720675803 | 54.18224622628445 | 42.09943221160504 | 54.18224622628444 | 3.718321562110511 | 0 | 100 | 0.533 | Xylose | Man | 0.2208467081769029 | 0.2071224741462762 | |||||||||||||||||||||||||
Man | 32.0552564311742 | 42.84005003535107 | 1.0387773970740195 | 22.722575732854732 | 1.3433404035459835 | 20.117474302496337 | 77.27742426714526 | 1.2940389893729327 | 29.403898937293263 | 26.032796115138304 | 55.43669505243157 | 41.48075163628686 | 55.43669505243157 | 1.3442184530931098 | 1.738334858188472 | 100 | 0.3111434803402445 | Mannose | Ara | 0.42033728406787735 | 0.3904255078838626 | |||||||||||||||||||||||||
Ara | 32.6989885541841 | 48.69975961496277 | 1.0346010374673171 | 17.56665079338581 | 0 | 31.13310882157696 | 82.43334920661418 | 1.2131012625649369 | 21.310126256493678 | 37.767613619026584 | 59.077739875520265 | 39.667184299677146 | 59.077739875520265 | 1.255075824802596 | 0 | 100.00000000000001 | 0.7251481919485653 | Rhamnose | Xyl | 0.3874864341363223 | 0.3600360393778379 | |||||||||||||||||||||||||
Xyl | 41.85204242030316 | 45.935413213797915 | 1.4623433702487107 | 4.499734154502209 | 6.250466841147996 | 41.43567905929571 | 95.50026584549778 | 1.0471175039636222 | 4.711750396362214 | 43.38802483160745 | 48.099775227969666 | 43.82400619492748 | 48.099775227969666 | 1.5312453397925812 | 6.544973237310276 | 100 | 0.5501397870718139 | Arabinose | Rha | 0.31383192550699945 | 0.2941599826312649 | |||||||||||||||||||||||||
Rha | 9.272214681006579 | 80.56802756604365 | 0 | 10.159757752949776 | 0 | 70.40826981309388 | 89.84024224705023 | 1.1130869363086935 | 11.308693630869362 | 78.37052533705254 | 89.6792189679219 | 10.320781032078102 | 89.6792189679219 | 0 | 0 | 100 | 0.6458801519925772 | Lactose | Fuc | 0.24390956678623743 | 0.23312096987140263 | |||||||||||||||||||||||||
Fuc | 35.29 | 57.39 | 0.51 | 3.61 | 3.2 | 53.78 | 96.39000000000001 | 1.0374520178441746 | 3.7452017844174703 | 55.79416951965971 | 59.53937130407718 | 36.61168170972092 | 59.539371304077186 | 0.5291005291005291 | 3.319846457101359 | 100 | 0.3614708690469124 | Maltose | Mal | 0.5462000328676749 | 0.5139041929132872 | |||||||||||||||||||||||||
Mal | 38.05085980086423 | 42.643555840298184 | 1.6064056780647615 | 9.070065885854069 | 8.629112794918754 | 33.57348995444411 | 90.92993411414592 | 1.0997478550294368 | 9.97478550294368 | 36.92237356325226 | 46.89715906619594 | 41.84635144802626 | 46.89715906619594 | 1.7666411987588295 | 9.489848287018969 | 100.00000000000001 | 0.6964094722831031 | Sucrose | Suc | 0.5295186378411968 | 0.49305777821215796 | |||||||||||||||||||||||||
Suc | 29.80907013671043 | 47.82154060648309 | 1.3245033112582782 | 21.0448859455482 | 0 | 26.77665466093489 | 78.95511405445181 | 1.2665424044734388 | 26.654240447343895 | 33.91376857801539 | 60.56800902535929 | 37.75445136606661 | 60.56800902535928 | 1.6775396085740912 | 0 | 99.99999999999999 | 0.3616331049375756 | α-Cyclodextrin | Lac | 0.45647062792453946 | 0.42638387316825005 | |||||||||||||||||||||||||
Lac | 37.76177369370306 | 43.13709234470694 | 1.5336444013365387 | 9.450053647474045 | 8.1174359127794 | 33.6870386972329 | 90.54994635252595 | 1.1043628851052372 | 10.436288510523706 | 37.2027152463279 | 47.63900375685161 | 41.702701343068966 | 47.6390037568516 | 1.6936999557855141 | 8.964594944293921 | 100.00000000000001 | 0.7198262935465016 | Xylan | Cyclo | 0.25722110032901596 | 0.2419550842996383 | |||||||||||||||||||||||||
Cyclo | 37.794259996166666 | 40.929069845615146 | 0.8980204367653741 | 15.292337241221327 | 5.086312480231491 | 25.63673260439382 | 84.70766275877867 | 1.1805307423576212 | 18.05307423576211 | 30.26495097308887 | 48.31802520885098 | 44.617285810131584 | 48.318025208850976 | 1.0601407328669423 | 6.004548248150516 | 100.00000000000001 | 0.7362455022966088 | Fucose | Xylan | 0.5641756478471871 | 0.5242278922756679 | |||||||||||||||||||||||||
Xylan | 27.445179101817548 | 50.97349066762261 | 0.018229020193552888 | 11.411773236410063 | 10.151327973956219 | 39.56171743121255 | 88.58822676358993 | 1.1288181697875497 | 12.88181697875495 | 44.65798546435355 | 57.5398024431085 | 30.98061684320519 | 57.5398024431085 | 0.020577249211906654 | 11.459003464474414 | 100 | 0.7447250324510224 | Glucuronate | GlcA | 0.5779055337092985 | 0.5282434401293054 | |||||||||||||||||||||||||
GlcA | 3.1855185782753823 | 96.77572880133711 | 0.03875262038750342 | 0 | 0 | 96.77572880133711 | 99.99999999999999 | 1.0000000000000002 | 0 | 96.77572880133714 | 96.77572880133714 | 3.185518578275383 | 96.77572880133714 | 0.03875262038750343 | 0 | 100.00000000000001 | ||||||||||||||||||||||||||||||
Prop | Succ | Acet via Form | Acet via Fd | Fuma | 1,2-Pro | |||||||||||||||||||||||||||||||||||||||||
ATP | NADH | Na+ | Fd | ATP | NADH | Fd | ATP | NADH | Fd | ATP | NADH | Fd | ATP | NADH | Fd | ATP | NADH | Fd | ||||||||||||||||||||||||||||
Needed | Formed | Needed | Formed | formed | Formed | Needed | Formed | Needed | Formed | Formed | Needed | Formed | Needed | Formed | Formed | Needed | Formed | Needed | Formed | Formed | Needed | Formed | Needed | Formed | Formed | Needed | Formed | Needed | Formed | Formed | ||||||||||||||||
Glc | 2 | 5.483877211318856 | 7.483877211318856 | 4 | 0.5161227886811443 | 0 | 2 | 4 | 4 | 4 | 0 | 2 | 6 | 0 | 4 | 0 | 2 | 6 | 0 | 4 | 2 | 2 | 4 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Gal | 2 | 5.253517556090759 | 7.253517556090759 | 4 | 0.7464824439092407 | 0 | 2 | 4 | 4 | 4 | 0 | 2 | 6 | 0 | 4 | 0 | 2 | 6 | 0 | 4 | 2 | 2 | 4 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Fru | 2 | 5.545464462990236 | 7.545464462990237 | 4 | 0.4545355370097638 | 0 | 2 | 4 | 4 | 4 | 0 | 2 | 6 | 0 | 4 | 0 | 2 | 6 | 0 | 4 | 2 | 2 | 4 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Man | 2 | 4.690131620645216 | 6.690131620645216 | 4 | 1.3098683793547843 | 0 | 2 | 4 | 4 | 4 | 0 | 2 | 6 | 0 | 4 | 0 | 2 | 6 | 0 | 4 | 2 | 2 | 4 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Ara | 5 | 12.470267857142858 | 17.470267857142858 | 10 | 2.529732142857143 | 0 | 5 | 10 | 10 | 10 | 0 | 5 | 15 | 0 | 10 | 0 | 5 | 15 | 0 | 10 | 5 | 5 | 10 | 10 | 10 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Xyl | 5 | 12.720018239854081 | 17.72001823985408 | 10 | 2.279981760145919 | 0 | 5 | 10 | 10 | 10 | 0 | 5 | 15 | 0 | 10 | 0 | 5 | 15 | 0 | 10 | 5 | 5 | 10 | 10 | 10 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Rha | 1 | 2.2173844989956435 | 4.782615501004356 | 2 | 0.7826155010043565 | 0 | 1 | 2 | 4.7318 | 2 | 0 | 1 | 3 | 1.7318 | 2 | 0 | 1 | 3 | 1.7318 | 2 | 1 | 1 | 2 | 4.7318 | 2 | 0 | 1 | 0 | 2 | 0 | 0 | |||||||||||||||
Fuc | 1 | 2.43 | 3.9139567567567566 | 2 | 0.7567567567567568 | 0 | 1 | 2 | 3.6328 | 2 | 0 | 1 | 3 | 1.6328 | 2 | 0 | 1 | 3 | 1.6328 | 2 | 1 | 1 | 2 | 3.6328 | 2 | 0 | 1 | 0 | 2 | 0 | 0 | |||||||||||||||
Mal | 3 | 9.505603964067213 | 13.505603964067214 | 8 | 2.494396035932786 | 0 | 3 | 8 | 8 | 8 | 0 | 3 | 12 | 0 | 8 | 0 | 3 | 12 | 0 | 8 | 4 | 3 | 8 | 8 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Suc | 4 | 10.748326530612246 | 14.748326530612244 | 8 | 1.2516734693877551 | 0 | 4 | 8 | 8 | 8 | 0 | 4 | 12 | 0 | 8 | 0 | 4 | 12 | 0 | 8 | 4 | 4 | 8 | 8 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Lac | 4 | 9.915127272727272 | 13.915127272727272 | 8 | 2.084872727272727 | 0 | 4 | 8 | 8 | 8 | 0 | 4 | 12 | 0 | 8 | 0 | 4 | 12 | 0 | 8 | 4 | 4 | 8 | 8 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Cyclo | 11.190483360939618 | 31.719628142890553 | 43.719628142890556 | 24 | 4.2803718571094524 | 0 | 11.1904833609396 | 24 | 24 | 24 | 0 | 11.190483360939618 | 36 | 0 | 24 | 0 | 11.190483360939618 | 36 | 0 | 24 | 12 | 11.190483360939618 | 24 | 24 | 24 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Xylan | 11.65 | 29.63764249886001 | 41.28764249886001 | 23.3 | 5.312357501139991 | 0 | 11.65 | 23.3 | 23.3 | 23.3 | 0 | 11.65 | 34.95 | 0 | 23.3 | 0 | 11.65 | 34.95 | 0 | 23.3 | 11.65 | 11.65 | 23.3 | 23.3 | 23.3 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
GlcA | 2 | 3.8828648648648647 | 8.882864864864864 | 2 | 1.117135135135135 | 0 | 2 | 3 | 6 | 2 | 0 | 1 | 4 | 2 | 2 | 0 | 1 | 4 | 2 | 2 | 2 | 2 | 3 | 6 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||
Prop pathway ratio | ||||||||||||||||||||||||||||||||||||||||||||||
Prop via MmdA | Prop via PccB | |||||||||||||||||||||||||||||||||||||||||||||
ATP | NADH | Na+ | Fd | ATP | NADH | Na+ | Fd | Ratio of MmdA&PccB | ||||||||||||||||||||||||||||||||||||||
Needed | Formed | Needed | Formed | formed | Formed | Needed | Formed | Needed | Formed | formed | Formed | MmdA | PccB | |||||||||||||||||||||||||||||||||
Glc | 2 | 4 | 6 | 4 | 2 | 0 | 2 | 6 | 8 | 4 | 0 | 0 | 0.2580613943405721 | 0.7419386056594279 | ||||||||||||||||||||||||||||||||
Gal | 2 | 4 | 6 | 4 | 2 | 0 | 2 | 6 | 8 | 4 | 0 | 0 | 0.37324122195462034 | 0.6267587780453796 | ||||||||||||||||||||||||||||||||
Fru | 2 | 4 | 6 | 4 | 2 | 0 | 2 | 6 | 8 | 4 | 0 | 0 | 0.2272677685048819 | 0.7727322314951182 | ||||||||||||||||||||||||||||||||
Man | 2 | 4 | 6 | 4 | 2 | 0 | 2 | 6 | 8 | 4 | 0 | 0 | 0.6549341896773921 | 0.34506581032260786 | ||||||||||||||||||||||||||||||||
Ara | 5 | 10 | 15 | 10 | 5 | 0 | 5 | 15 | 20 | 10 | 0 | 0 | 0.5059464285714286 | 0.4940535714285714 | ||||||||||||||||||||||||||||||||
Xyl | 5 | 10 | 15 | 10 | 5 | 0 | 5 | 15 | 20 | 10 | 0 | 0 | 0.45599635202918376 | 0.5440036479708162 | ||||||||||||||||||||||||||||||||
Rha | 1 | 2 | 5 | 2 | 1 | 0 | 1 | 3 | 4 | 2 | 0 | 0 | 0.7826155010043565 | 0.2173844989956435 | ||||||||||||||||||||||||||||||||
Fuc | 1 | 2 | 4.1572 | 2 | 1 | 0 | 1 | 3 | 3.1572 | 2 | 0 | 0 | 0.7567567567567568 | 0.2432432432432432 | ||||||||||||||||||||||||||||||||
Mal | 3 | 8 | 12 | 8 | 4 | 0 | 3 | 12 | 16 | 8 | 0 | 0 | 0.6235990089831965 | 0.37640099101680347 | ||||||||||||||||||||||||||||||||
Suc | 4 | 8 | 12 | 8 | 4 | 0 | 4 | 12 | 16 | 8 | 0 | 0 | 0.3129183673469388 | 0.6870816326530612 | ||||||||||||||||||||||||||||||||
Lac | 4 | 8 | 12 | 8 | 4 | 0 | 4 | 12 | 16 | 8 | 0 | 0 | 0.5212181818181818 | 0.4787818181818182 | ||||||||||||||||||||||||||||||||
Cyclo | 9 | 24 | 36 | 24 | 12 | 0 | 9 | 36 | 48 | 24 | 0 | 0 | 0.5074663621913269 | 0.4925336378086731 | ||||||||||||||||||||||||||||||||
Xylan | 11.65 | 23.3 | 34.95 | 23.3 | 11.65 | 0 | 11.65 | 34.95 | 46.6 | 23.3 | 0 | 0 | 0.664425070972678 | 0.335574929027322 | ||||||||||||||||||||||||||||||||
GlcA | 2 | 3 | 8 | 2 | 2 | 0 | 2 | 5 | 10 | 2 | 0 | 0 | 0.5585675675675675 | 0.44143243243243246 | ||||||||||||||||||||||||||||||||
1/2ODmax | ||||||||||||||||||||||||||||||||||||||||||||||
ATP Gain | per depleted substrate [mM/mM] | C-normalized [mM/mM] | ||||||||||||||||||||||||||||||||||||||||||||
Total ATP (3.3) | Total ATP (4.3) | Total ATP (3.3) | Total ATP (4.3) | |||||||||||||||||||||||||||||||||||||||||||
Glc | 1.8728484957290534 | 1.7448926481403404 | Glc | 0.31214141595484224 | 0.2908154413567234 | |||||||||||||||||||||||||||||||||||||||||
Gal | 1.48635372245776 | 1.4132484588426097 | Gal | 0.24772562040962667 | 0.23554140980710161 | |||||||||||||||||||||||||||||||||||||||||
Fru | 2.2035511731641364 | 2.0595339871267604 | Fru | 0.3672585288606894 | 0.3432556645211267 | |||||||||||||||||||||||||||||||||||||||||
Man | 2.070700639908719 | 1.9312979100016499 | Man | 0.3451167733181198 | 0.32188298500027496 | |||||||||||||||||||||||||||||||||||||||||
Ara | 2.313429291399705 | 2.1463335755447597 | Ara | 0.462685858279941 | 0.4292667151089519 | |||||||||||||||||||||||||||||||||||||||||
Xyl | 1.6880596553909635 | 1.5666000226423487 | Xyl | 0.3376119310781927 | 0.31332000452846975 | |||||||||||||||||||||||||||||||||||||||||
Rha | 1.2491615339694286 | 1.155275264493484 | Rha | 0.20819358899490478 | 0.19254587741558069 | |||||||||||||||||||||||||||||||||||||||||
Fuc | 1.6511664779864126 | 1.5843468497456827 | Fuc | 0.27519441299773545 | 0.2640578082909471 | |||||||||||||||||||||||||||||||||||||||||
Mal | 3.654123582124094 | 3.43620290333478 | Mal | 0.30451029851034117 | 0.286350241944565 | |||||||||||||||||||||||||||||||||||||||||
Suc | 6.053343174107563 | 5.646418364007801 | Suc | 0.5044452645089635 | 0.4705348636673168 | |||||||||||||||||||||||||||||||||||||||||
Lac | 4.936141185970775 | 4.604718997081345 | Lac | 0.4113450988308979 | 0.38372658309011204 | |||||||||||||||||||||||||||||||||||||||||
Cyclo | 13.715010396346637 | 12.884352020282604 | Cyclo | 0.3809725110096288 | 0.35789866723007235 | |||||||||||||||||||||||||||||||||||||||||
Xylan | 19.591564715001866 | 18.307051142672094 | Xylan | 0.5597589918571961 | 0.5230586040763455 |
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End concentration (ODmax) | Succinate | Propanoate | Acetate | Formate | Propane-1,2-diol | ||||||||||||||||||||||||
Substrate | Starting concentration | Mol | OD | CDW [g/L] | Succinate | Propanoate | Acetate | Formiate | 1,2PD | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | Substrate | Sum Product per Substrate | Sum Product per Substrate | Sum Product per Substrate | |
[mM] | [g/mol] | time [h] | ODmax | ODmax | [mM] | [mM] | [mM] | [mM] | [mM] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | ||
Glucose | 14,07 | 180,16 | 9,67 | 1,81 | 0,89 | 5,49 | 0,13 | 7,16 | 2,31 | - | 0,39 | 0,26 | 0,73 | 0,01 | 0,006 | 0,02 | 0,51 | 0,33 | 0,95 | 0,16 | 0,11 | 0,20 | - | - | - | Glucose | 1072 | 0,703 | 1893 |
Fructose | 14,38 | 180,16 | 8,92 | 1,69 | 0,73 | 5,21 | 0,03 | 6,07 | 1,94 | - | 0,36 | 0,24 | 0,84 | 0,002 | 0,001 | 0,01 | 0,42 | 0,28 | 0,98 | 0,14 | 0,09 | 0,20 | - | - | - | Fructose | 0,922 | 0,604 | 2032 |
Galactose | 14,20 | 180,16 | 10,58 | 2,10 | 0,87 | 4,46 | 0,15 | 5,58 | 1,86 | - | 0,31 | 0,21 | 0,60 | 0,01 | 0,004 | 0,01 | 0,39 | 0,13 | 0,39 | 0,13 | 0,06 | 0,16 | - | - | - | Galactose | 0,849 | 0,396 | 1166 |
Xylose | 16,61 | 150,13 | 10,42 | 1,84 | 0,67 | 6,01 | 0,37 | 5,59 | 0,02 | - | 0,36 | 0,28 | 1,06 | 0,02 | 0,017 | 0,06 | 0,34 | 0,26 | 0,99 | 0,001 | 0,001 | 0,002 | - | - | - | Xylose | 0,722 | 0,568 | 2112 |
Mannose | 13,91 | 180,16 | 8,83 | 1,93 | 0,84 | 4,78 | 0,08 | 5,75 | 2,11 | - | 0,34 | 0,22 | 0,67 | 0,01 | 0,004 | 0,01 | 0,41 | 0,27 | 0,81 | 0,15 | 0,10 | 0,19 | - | - | - | Mannose | 0,914 | 0,599 | 1682 |
Rhamnose | 10,97 | 164,16 | 15,75 | 0,63 | 0,38 | 0,32 | 0,01 | 5,50 | 0,330 | 11,28 | 0,03 | 0,02 | 0,10 | 0,00 | 0,000 | 0,00 | 0,50 | 0,36 | 1,71 | 0,030 | 0,022 | 0,066 | 1028 | 0,476 | 2258 | Rhamnose | 1589 | 0,880 | 4135 |
Arabinose | 16,09 | 150,13 | 8,50 | 1,63 | 0,71 | 5,48 | 0,00 | 6,76 | 1,74 | - | 0,34 | 0,27 | 0,91 | 0,00 | 0,000 | 0,00 | 0,42 | 0,33 | 1,12 | 0,11 | 0,09 | 0,19 | - | - | - | Arabinose | 0,869 | 0,684 | 2223 |
Lactose | 6,93 | 342,30 | 12,33 | 1,45 | 0,62 | 4,72 | 0,55 | 4,57 | 0,37 | - | 0,68 | 0,24 | 0,90 | 0,08 | 0,027 | 0,10 | 0,66 | 0,23 | 0,87 | 0,05 | 0,02 | 0,05 | - | - | - | Lactose | 1473 | 0,508 | 1918 |
Maltose | 7,22 | 342,30 | 15,08 | 2,13 | 0,89 | 4,02 | 0,59 | 4,18 | 0,21 | - | 0,56 | 0,19 | 0,53 | 0,08 | 0,028 | 0,08 | 0,58 | 0,20 | 0,55 | 0,03 | 0,01 | 0,02 | - | - | - | Maltose | 1246 | 0,430 | 1184 |
Saccharose | 7,16 | 342,30 | 11,00 | 1,79 | 0,68 | 6,20 | 0,00 | 7,22 | 2,61 | - | 0,86 | 0,30 | 1,08 | 0,00 | 0,00 | 0,00 | 1,01 | 0,35 | 1,25 | 0,36 | 0,13 | 0,29 | - | - | - | Saccharose | 2237 | 0,772 | 2622 |
α-Cyclodextrin | 2,50 | 972,84 | 9,00 | 1,96 | 0,67 | 4,74 | 0,31 | 4,71 | 1,18 | - | 1,90 | 0,23 | 0,84 | 0,12 | 0,015 | 0,05 | 1,88 | 0,23 | 0,83 | 0,47 | 0,06 | 0,13 | - | - | - | α-Cyclodextrin | 4376 | 0,531 | 1854 |
Xylan | 2,66 | 892,00 | 16,92 | 0,83 | 0,37 | 2,69 | 1,35 | 5,65 | 3,64 | - | 1,01 | 0,13 | 0,86 | 0,51 | 0,067 | 0,43 | 2,13 | 0,28 | 1,80 | 1,37 | 0,18 | 0,75 | - | - | - | Xylan | 5014 | 0,664 | 3844 |
Fucose | 13,30 | 164,16 | 22,00 | 0,38 | 0,16 | 2,00 | 0,23 | 4,07 | 0,21 | 5,36 | 0,15 | 0,11 | 1,48 | 0,02 | 0,01 | 0,17 | 0,31 | 0,22 | 3,01 | 0,02 | 0,01 | 0,10 | 0,403 | 0,187 | 2550 | Fucose | 0,894 | 0,540 | 7306 |
Glucuronicacid | 15,00 | 194,14 | 49,00 | 0,84 | 0,45 | 0,47 | 0,15 | 14,07 | 0,00 | - | 0,03 | 0,02 | 0,12 | 0,01 | 0,01 | 0,04 | 0,94 | 0,57 | 3,69 | 0,00 | 0,00 | 0,00 | - | - | - | Glucuronicacid | 0,979 | 0,595 | 3853 |
CDW | TCC | ||||||||||||||||||||||||||||
Substrate | Starting concentration | Mol | OD | CDW [g/L] | TCC [1/mL] | doubling time | generation time | division rate | biomass-specific growth rate | cell count-specific growth rate | biomass yield | biomass yield | space time yield | Substrate | |||||||||||||||
[mM] | [g/mol] | Zeit [h] | 1/4ODmax | Zeit [h] | 1/2ODmax | Zeit [h] | 3/4ODmax | Zeit [h] | ODmax | 1/4ODmax | 1/2ODmax | 3/4ODmax | ODmax | 1/4ODmax | 1/2ODmax | 3/4ODmax | ODmax | [h] | [h] | [1/h] | [g/(L*h)] | [1/(mL*h)] | [g/mMsubstrate] | [g/gsubstrate] | [g/(L*h)] | ||||
Glucose | 14,07 | 180,16 | 4,58 | 0,36 | 6,58 | 0,92 | 7,67 | 1,29 | 9,67 | 1,81 | 0,15 | 0,41 | 0,61 | 0,89 | 1,12E+09 | 3,45E+09 | 5,81E+09 | 7,71E+09 | 1,60 | 1,33 | 0,75 | 0,15 | 1,48E+09 | 0,06 | 0,35 | 0,09 | Glucose | ||
Fructose | 14,38 | 180,16 | 4,00 | 0,27 | 6,58 | 0,84 | 7,58 | 1,21 | 8,92 | 1,69 | 0,09 | 0,33 | 0,48 | 0,73 | 5,21E+08 | 2,00E+09 | 3,80E+09 | 7,05E+09 | 1,57 | 1,22 | 0,82 | 0,11 | 8,48E+08 | 0,05 | 0,28 | 0,08 | Fructose | ||
Galactose | 14,20 | 180,16 | 6,67 | 0,49 | 7,92 | 0,89 | 9,42 | 1,49 | 11,42 | 1,96 | 0,25 | 0,35 | 0,58 | 0,87 | 1,58E+09 | 2,78E+09 | 5,17E+09 | 5,96E+09 | 2,30 | 1,61 | 0,62 | 0,12 | 1,31E+09 | 0,06 | 0,34 | 0,08 | Galactose | ||
Xylose | 16,61 | 150,13 | 6,17 | 0,50 | 7,83 | 0,96 | 9,08 | 1,43 | 10,42 | 1,84 | 0,19 | 0,42 | 0,61 | 0,76 | 2,45E+09 | 5,28E+09 | 8,04E+09 | 8,35E+09 | 1,83 | 1,75 | 0,57 | 0,14 | 1,91E+09 | 0,05 | 0,30 | 0,07 | Xylose | ||
Mannose | 13,91 | 180,16 | 5,17 | 0,47 | 6,83 | 1,03 | 7,67 | 1,47 | 8,83 | 1,93 | 0,21 | 0,40 | 0,56 | 0,84 | 1,39E+09 | 2,91E+09 | 4,26E+09 | 6,83E+09 | 1,69 | 1,54 | 0,65 | 0,14 | 1,12E+09 | 0,06 | 0,34 | 0,10 | Mannose | ||
Rhamnose | 10,97 | 164,16 | 5,42 | 0,19 | 9,33 | 0,37 | 11,50 | 0,53 | 15,75 | 0,63 | 0,10 | 0,19 | 0,31 | 0,38 | 7,72E+08 | 1,67E+09 | 2,83E+09 | 4,28E+09 | 3,67 | 3,20 | 0,31 | 0,03 | 3,25E+08 | 0,03 | 0,21 | 0,02 | Rhamnose | ||
Arabinose | 16,09 | 150,13 | 5,00 | 0,50 | 5,92 | 0,80 | 7,33 | 1,37 | 8,50 | 1,63 | 0,18 | 0,26 | 0,60 | 0,69 | 1,99E+09 | 2,86E+09 | 5,46E+09 | 7,01E+09 | 1,39 | 1,62 | 0,62 | 0,19 | 1,52E+09 | 0,04 | 0,29 | 0,08 | Arabinose | ||
Lactose | 6,93 | 342,30 | 7,08 | 0,35 | 8,92 | 0,76 | 9,75 | 0,97 | 12,33 | 1,45 | 0,14 | 0,27 | 0,32 | 0,62 | 1,37E+09 | 2,71E+09 | 3,47E+09 | 6,60E+09 | 2,52 | 2,06 | 0,49 | 0,07 | 7,77E+08 | 0,09 | 0,26 | 0,05 | Lactose | ||
Maltose | 7,22 | 342,30 | 7,83 | 0,52 | 9,75 | 0,89 | 12,33 | 1,65 | 15,08 | 2,13 | 0,22 | 0,35 | 0,72 | 0,89 | 1,99E+09 | 3,27E+09 | 5,16E+09 | 6,30E+09 | 2,66 | 3,29 | 0,30 | 0,11 | 7,06E+08 | 0,12 | 0,36 | 0,06 | Maltose | ||
Saccharose | 7,16 | 342,30 | 6,58 | 0,55 | 8,00 | 1,10 | 8,83 | 1,33 | 11,00 | 1,79 | 0,24 | 0,41 | 0,50 | 0,68 | 1,68E+09 | 3,18E+09 | 4,48E+09 | 6,39E+09 | 2,29 | 1,60 | 0,63 | 0,12 | 1,22E+09 | 0,09 | 0,28 | 0,06 | Saccharose | ||
α-Cyclodextrin | 2,50 | 972,84 | 6,25 | 0,62 | 7,25 | 1,07 | 8,33 | 1,72 | 9,00 | 1,96 | 0,23 | 0,36 | 0,53 | 0,67 | 1,70E+09 | 2,92E+09 | 5,61E+09 | 5,94E+09 | 1,74 | 1,21 | 0,83 | 0,14 | 1,89E+09 | 0,27 | 0,28 | 0,07 | α-Cyclodextrin | ||
Xylan | 2,66 | 892,00 | 5,33 | 0,21 | 8,17 | 0,44 | 10,58 | 0,60 | 16,92 | 0,83 | 0,12 | 0,21 | 0,28 | 0,37 | 1,35E+09 | 3,43E+09 | 4,75E+09 | 7,88E+09 | 4,57 | 3,39 | 0,29 | 0,03 | 6,50E+08 | 0,14 | 0,16 | 0,02 | Xylan | ||
Fucose | 13,30 | 164,16 | 4,75 | 0,11 | 10,00 | 0,21 | 15,83 | 0,30 | 22,00 | 0,38 | 0,05 | 0,08 | 0,13 | 0,16 | 1,11E+09 | 1,79E+09 | 2,43E+09 | 7,30E+09 | 8,80 | 10,23 | 0,10 | 0,01 | 1,19E+08 | 0,01 | 0,07 | 0,01 | Fucose | ||
Glucuronicacid | 15,00 | 194,14 | 17,75 | 0,22 | 25,50 | 0,40 | 34,50 | 0,61 | 49,00 | 0,84 | 0,11 | 0,19 | 0,26 | 0,45 | 2,96E+09 | 4,40E+09 | 5,72E+09 | 9,45E+09 | 14,26 | 18,29 | 0,05 | 0,01 | 1,64E+08 | 0,03 | 0,15 | 0,01 | Glucuronicacid | ||