Selected Cell
Cell:
Value:
StudyENA
experimentENA
runENA
sampleENA
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| ENA Study attributes | Format/Constrains | examle values (to replace) | |||||||
| alias | text | study_sc_01 | |||||||
| status | Label/Values allowed "add, added, modify, modified, cancel, cancelled, release, released" | add | |||||||
| accession | text | if exist | |||||||
| title | text | Sequencing of yeast in heat stress conditions | |||||||
| study_type | Label/Values allowed "Whole Genome Sequencing,Metagenomics,Transcriptome Analysis,Resequencing,Epigenetics,Synthetic Genomics,Forensic or Paleo-genomics,Gene Regulation Study,Cancer Genomics,Population Genomics, RNASeq,Exome Sequencing,Pooled Clone Sequencing,Transcriptome Sequencing,Other" | Whole Genome Sequencing | |||||||
| study_abstract | text | Genome sequences are investigated in yeast submitted to heat stress | |||||||
| pubmed_id | web link | 26978244 | |||||||
| submission_date | date | 45051 | |||||||
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| ENA Experiment(Assay) attributes | Format/Constrains | examle values (to replace) | |||||||
| alias | experiment_01 | ||||||||
| status | Controlled vocabulary/ Values allowed "add, added, modify, modified, cancel, cancelled, release, released" | add | |||||||
| accession | text | ||||||||
| title | text | WGS of yeast samples from heat stress treatments | |||||||
| study_alias | text | study_sc_01 | |||||||
| sample_alias | text | yeast_wgs_01 | |||||||
| design_description | text | Description of the design of the experiment | |||||||
| library_name | text | wgs_library_1 | |||||||
| library_strategy | Controlled vocabulary/ Values allowed "Hi-C,ATAC-seq,WCS,RAD-Seq,CLONE,POOLCLONE,AMPLICON,CLONEEND,FINISHING,ChIP-Seq,MNase-Seq,DNase-Hypersensitivity,Bisulfite-Seq,CTS,MRE-Seq,MeDIP-Seq,MBD-Seq,Tn-Seq,VALIDATION,FAIRE-seq,SELEX,RIP-Seq, ChIA-PET,Synthetic-Long-Read,Targeted-Capture,Tethered Chromatin Conformation Capture,OTHER,NOMe-Seq,ChM-Seq,GBS" | WGS | |||||||
| library_source | Controlled vocabulary/ Values allowed " GENOMIC,GENOMIC SINGLE CELL,TRANSCRIPTOMIC,TRANSCRIPTOMIC SINGLE CELL,METAGENOMIC,METATRANSCRIPTOMIC,SYNTHETIC,VIRAL RNA,OTHER" | GENOMIC | |||||||
| library_selection | Controlled vocabulary/ Values allowed "RANDOM,PCR,RANDOM PCR,RT-PCR,HMPR,MF,repeat fractionation,size fractionation,MSLL,cDNA,cDNA_randomPriming,cDNA_oligo_dT,PolyA,Oligo-dT,Inverse rRNA, Inverse rRNA selection,ChIP,ChIP-Seq,MNase,DNase,Hybrid Selection,Reduced Representation,Restriction Digest,5-methylcytidine antibody,MBD2 protein methyl-CpG binding domain, CAGE,RACE,MDA,padlock probes capture method,other,unspecified" | other | |||||||
| library_layout | Controlled vocabulary/ Values allowed "single, paired" | single | |||||||
| insert_size | text | ||||||||
| library_construction_protocol | text | Description of the protocol for the library | |||||||
| platform | Controlled vocabulary/ Values allowed " LS454,ILLUMINA,HELICOS,ABI_SOLID,COMPLETE_GENOMICS,BGISEQ,OXFORD_NANOPORE,PACBIO_SMRT,ION_TORRENT,CAPILLARY,DNBSEQ" | ILLUMINA | |||||||
| instrument_model | Controlled vocabulary/ Values allowed "454 GS, 454 GS 20,454 GS FLX,454 GS FLX Titanium,454 GS FLX+,454 GS Junior,AB 310 Genetic Analyzer,AB 3130 Genetic Analyzer,AB 3130xL Genetic Analyzer, AB 3500 Genetic Analyzer, AB 3500xL Genetic Analyzer,AB 3730 Genetic Analyzer, AB 3730xL Genetic Analyzer,AB 5500 Genetic Analyzer,AB 5500xl Genetic Analyzer,AB 5500xl-W Genetic Analysis System, AB SOLiD 3 Plus System, AB SOLiD 4 System,AB SOLiD 4hq System, AB SOLiD PI System,AB SOLiD System,AB SOLiD System 2.0, AB SOLiD System 3.0, BGISEQ-500, Complete Genomics, DNBSEQ-G400, DNBSEQ-G400 FAST,DNBSEQ-G50,DNBSEQ-T7, GridION,Helicos HeliScope,HiSeq X Five, HiSeq X Ten,Illumina Genome Analyzer,Illumina Genome Analyzer II,Illumina Genome Analyzer IIx, Illumina HiScanSQ,Illumina HiSeq 1000, Illumina HiSeq 1500,Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina HiSeq 3000,Illumina HiSeq 4000,Illumina iSeq 100,Illumina MiniSeq,Illumina MiSeq, Illumina NovaSeq 6000,Ion Torrent PGM,Ion Torrent Proton,Ion Torrent S5,Ion Torrent S5 XL,MinION,NextSeq 500,NextSeq 550,PacBio RS,PacBio RS II,PromethION,Sequel,Sequel II,unspecified" | Illumina HiSeq 4000 | |||||||
| submission_date | Date | 2023-05-05T0:0:0+0000 | |||||||
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| Run attributes ENA | Format/Constrains | examle values (to replace) | |||||||
| alias | text | any text | |||||||
| status | Controlled vocabulary/ Values allowed "add, added, modify, modified, cancel, cancelled, release, released" | add | |||||||
| accession | text | if exist | |||||||
| experiment_alias | text | experiment_02 | |||||||
| file_name | text | file2_r1.gz | |||||||
| file_format | Controlled vocabulary/ Values allowed " bam,completegenomics_native,cram,fastq,oxfordnanopore_native,pacbio_hdf5,sff" | fastq | |||||||
| file_checksum | text | any text | |||||||
| submission_date | date | 2023-05-05T0:0:0+0000 | |||||||
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| Sample attribute ENA | Format/Constrains | examle values (to replace) | |||||||
| alias | text | yeast_wgs_02 | |||||||
| status | Controlled vocabulary/ Values allowed "add, added, modify, modified, cancel, cancelled, release, released" | add | |||||||
| accession | text | ||||||||
| title | text | Yeast under heat stress | |||||||
| scientific_name | text | ||||||||
| taxon_id | NCBI ID | 4932 | |||||||
| sample_description | text | Samples were cultured and isolated in laboratory conditions | |||||||
| cell_type | text | ||||||||
| dev_stage | text | ||||||||
| germline | text | ||||||||
| tissue_lib | text | ||||||||
| tissue_type | text | ||||||||
| collection_date | text | 2022-12-12T0:0:0+0000 | |||||||
| isolation_source | text | ||||||||
| lat_lon | text | ||||||||
| collected_by | text | ||||||||
| geographic location (country and/or sea) | text | ||||||||
| geographic location (region and locality) | text | ||||||||
| identified_by | text | ||||||||
| environmental_sample | Controlled vocabulary/ Values allowed "yes, no" | ||||||||
| mating_type | text | ||||||||
| sex | text | ||||||||
| lab_host | text | ||||||||
| host scientific name | text | ||||||||
| bio_material | text | ||||||||
| culture_collection | text | ||||||||
| specimen_voucher | text | ||||||||
| cultivar | text | ||||||||
| ecotype | text | ||||||||
| isolate | text | ||||||||
| sub_species | text | ||||||||
| variety | text | ||||||||
| sub_strain | text | ||||||||
| cell_line | text | ||||||||
| serotype | text | ||||||||
| serovar | text | ||||||||
| strain | text | ||||||||
| submission_date | date | 2022-12-12T0:0:0+0000 |
