Selected Cell
Cell:
Value:
StudyENA
experimentENA
runENA
sampleENA
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| ENA Study attributes | Format/Constrains | examle values (to replace) | |||||||
| alias | text | study_sc_01 | |||||||
| status | Label/Values allowed "add, added, modify, modified, cancel, cancelled, release, released" | add | |||||||
| accession | text | if exist | |||||||
| title | text | Sequencing of yeast in heat stress conditions | |||||||
| study_type | text | Whole Genome Sequencing | |||||||
| study_abstract | text | Genome sequences are investigated in yeast submitted to heat stress | |||||||
| pubmed_id | web link | 26978244 | |||||||
| submission_date | date | 45051 | |||||||
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| ENA Experiment(Assay) attributes | Format/Constrains | examle values (to replace) | |||||||
| alias | experiment_01 | ||||||||
| status | Controlled vocabulary/ Values allowed "add, added, modify, modified, cancel, cancelled, release, released" | add | |||||||
| accession | text | ||||||||
| title | text | WGS of yeast samples from heat stress treatments | |||||||
| study_alias | text | study_sc_01 | |||||||
| sample_alias | text | yeast_wgs_01 | |||||||
| design_description | text | Description of the design of the experiment | |||||||
| library_name | text | wgs_library_1 | |||||||
| library_strategy | Controlled vocabulary/ Values allowed "xx" | WGS | |||||||
| library_source | Controlled vocabulary/ Values allowed "xx" | GENOMIC | |||||||
| library_selection | Controlled vocabulary/ Values allowed "xx" | other | |||||||
| library_layout | Controlled vocabulary/ Values allowed "xx" | single | |||||||
| insert_size | text | ||||||||
| library_construction_protocol | text | Description of the protocol for the library | |||||||
| platform | Controlled vocabulary/ Values allowed "xx" | ILLUMINA | |||||||
| instrument_model | Controlled vocabulary/ Values allowed "xx" | Illumina HiSeq 4000 | |||||||
| submission_date | Date | 2023-05-05T0:0:0+0000 | |||||||
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| Run attributes ENA | Format/Constrains | examle values (to replace) | |||||||
| alias | text | any text | |||||||
| status | Controlled vocabulary/ Values allowed "add, added, modify, modified, cancel, cancelled, release, released" | add | |||||||
| accession | text | if exist | |||||||
| experiment_alias | text | experiment_02 | |||||||
| file_name | text | file2_r1.gz | |||||||
| file_format | Controlled vocabulary/ Values allowed " bam,completegenomics_native,cram,fastq,oxfordnanopore_native,pacbio_hdf5,sff" | fastq | |||||||
| file_checksum | text | any text | |||||||
| submission_date | date | 2023-05-05T0:0:0+0000 | |||||||
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| Sample attribute ENA | Format/Constrains | examle values (to replace) | |||||||
| alias | text | yeast_wgs_02 | |||||||
| status | Controlled vocabulary/ Values allowed "add, added, modify, modified, cancel, cancelled, release, released" | add | |||||||
| accession | text | ||||||||
| title | text | Yeast under heat stress | |||||||
| scientific_name | text | ||||||||
| taxon_id | NCBI ID | 4932 | |||||||
| sample_description | text | Samples were cultured and isolated in laboratory conditions | |||||||
| cell_type | text | ||||||||
| dev_stage | text | ||||||||
| germline | text | ||||||||
| tissue_lib | text | ||||||||
| tissue_type | text | ||||||||
| collection_date | text | 2022-12-12T0:0:0+0000 | |||||||
| isolation_source | text | ||||||||
| lat_lon | text | ||||||||
| collected_by | text | ||||||||
| geographic location (country and/or sea) | text | ||||||||
| geographic location (region and locality) | text | ||||||||
| identified_by | text | ||||||||
| environmental_sample | text | ||||||||
| mating_type | text | ||||||||
| sex | text | ||||||||
| lab_host | text | ||||||||
| host scientific name | text | ||||||||
| bio_material | text | ||||||||
| culture_collection | text | ||||||||
| specimen_voucher | text | ||||||||
| cultivar | text | ||||||||
| ecotype | text | ||||||||
| isolate | text | ||||||||
| sub_species | text | ||||||||
| variety | text | ||||||||
| sub_strain | text | ||||||||
| cell_line | text | ||||||||
| serotype | text | ||||||||
| serovar | text | ||||||||
| strain | text | ||||||||
| submission_date | date | 2022-12-12T0:0:0+0000 |
