Selected Cell
Cell:
Value:
InvestigationInformation
StudyInformation
AssayInformation
AssayConditions
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| #Template info | |||||||||
| #TemplateVersion | LEI-MIHCSME_userTemplate_v3 | version 3 is updated version including recommendations by users, plus ISA and REMBI compliant. | |||||||
| #DateTemplateGenerated | Jan-20-2023 | ||||||||
| #CreatedBy | RH | ||||||||
| Annotation_groups | Key | Value | Comments_User | Description_Examples_Values | |||||
| DataOwner | First Name | Esmee | First Name | ||||||
| DataOwner | Middle Name(s) | Middle Name(s) if any | |||||||
| DataOwner | Last Name | Koedoot | Last Name | ||||||
| DataOwner | User name | koedoote | Institutional user name | ||||||
| DataOwner | Institute | Leiden University, Faculty of Science, Leiden Academic Centre for Drug Research | Institute level, eg. Universiteit Leiden, Faculty of Science, Institute of Biology | ||||||
| DataOwner | E-Mail Address | e.koedoot@lacdr.leidenuniv.nl | Institution email address | ||||||
| DataOwner | ORCID investigator | https://orcid.org/0000-0002-9041-0075 | orcid id as url, eg. https://orcid.org/0000-0002-3704-3675 | ||||||
| DataCollaborator | ORCID Data Collaborator | ORCID is of collaborator with experimental, collection or analysis part of this investigation | |||||||
| DataCollaborator | ORCID Data Collaborator | ORCID is of collaborator with experimental, collection or analysis part of this investigation | |||||||
| InvestigationInformation | Project ID | NA | EU/NWO/consortium ID – Examples: EuTOX | ||||||
| InvestigationInformation | Investigation Title | RNA splicing in breast cancer progression | High level concept to link related studies. Could be the main hypothesis/question you want to investigate as part of your research. Could be a chapter/thesis of your work. | ||||||
| InvestigationInformation | Investigation internal ID | NA | Corresponding internal ID for your investigation. | ||||||
| InvestigationInformation | Investigation description | investigating the signaling landscape controlling breast cancer cell migration | Short description for your investigation. | ||||||
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| # comments: | |||||||||
| # | |||||||||
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| Annotation_groups | Key | Value | Comments_User | Description_Examples_Values | |||||
| Study | Study Title | Identification of metastasis driver genes controlling breast cancer cell migration using siRNA screening | Manuscript/chapter/publication/paragraph title describing purpose or intention for one or multiple assays (screens/experiments) | ||||||
| Study | Study internal ID | NA | Study ID, linked to ELN or lab journal | ||||||
| Study | Study Description | Triple-negative breast cancer (TNBC) is an aggressive and highly metastatic breast cancer subtype. Enhanced TNBC cell motility is a prerequisite of TNBC cell dissemination. Here | Description of study with additional unstructured information about this study possibly not covered elsewhere in this template. | ||||||
| Study | Study Key Words | [RNAi screening, systems microscopy] | List of key words associated with your study (EFO-terms). Examples: FDA approved drugs, Kinase inhibitors, DNA damage response, Unfolded protein response, Oxidative stress response, Inflammatory signaling, chemical similarity | ||||||
| Biosample | Biosample Taxon | NCBITAXON:9606 | NCBI-taxon id, human = NCBITAXON:9606; | ||||||
| Biosample | Biosample description | TNBC cell lines (Hs578T and MDA-MB-231) | Description of biosample genotype; Additional unstructured information about organisms used in this experiment. | ||||||
| Biosample | Biosample Organism | Homo sapiens | Which organism is your cell lines or tissue from. Examples: Human or mouse | ||||||
| Biosample | Number of cell lines used | 2 | In case multiple cell lines are used indicate here | ||||||
| Library | Library File Name | idr0022-screenA-annotation | Library file info | ||||||
| Library | Library File Format | tab-delimited text | Library file info | ||||||
| Library | Library Type | siRNA library | Library file info | ||||||
| Library | Library Manufacturer | Dharmacon | Library file info | ||||||
| Library | Library Version | NA | Library file info | ||||||
| Library | Library Experimental Conditions | NA | Any experimental conditions some cells were grown under as part of the study enter the information here e.g. different environmental stress conditions, or mutant background compared to wild type. | ||||||
| Library | Quality Control Description | NA | A brief description of the kind of quality control measures that were taken. | ||||||
| Protocols | HCS library protocol | NA | Url/doi protocols.io or ELN associated url. At least SOP/protocol filename | ||||||
| Protocols | growth protocol | Transfection | Reverse transfections were performed at 50nM concentration using 0.3 µl INTERFERin (Polyplus) per well. Transfection reagent and siRNA were incubated for 20 minutes | Url/doi protocols.io or ELN associated url. At least SOP/protocol filename | |||||
| Protocols | treatment protocol | Phagokinetic track assay | Url/doi protocols.io or ELN associated url. At least SOP/protocol filename | ||||||
| Protocols | HCS data analysis protocol | Data analysis | Url/doi protocols.io or ELN associated url. At least SOP/protocol filename | ||||||
| Plate | Plate type | SensoPlate | Example: uclear | ||||||
| Plate | Plate type Manufacturer | Greiner Bio-One | Example: Greiner Bio-One | ||||||
| Plate | Plate type Catalog number | NA | Example:781081 | ||||||
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| Annotation_groups | Key | Value | Comments_User | Description_Examples_Values | |||||
| Assay | Assay Title | ScreenB | Screen name | ||||||
| Assay | Assay internal ID | NA | Experimental ID, e.g. aMV-010, linked to ELN or labjournal | ||||||
| Assay | Assay Description | Validation RNAi screen using smartpool and single siRNAs to validate cell migratory regulators in Hs578T and MDA-MB-231 cells that were identified in the primary screen. | validation screen | Description of screen plus additional unstructured information about screen not covered elsewhere. Stages of HCS: either primary screen, secondary screen or validation screen. EFO terms | |||||
| Assay | Assay number of biological replicates | 4 | single and smartpooled | Total number of biol. Repl. | |||||
| Assay | Number of plates | 152 | Total number of plates, n-plates | ||||||
| Assay | Assay Technology Type | bright-field microscopy | Imaging method, Fbbi terms. | ||||||
| Assay | Assay Type | high content screen of cells treated with library of siRNAs | List of options: sub types of HCS e.g. Gene Knock down, RNAi, compount, EFO terms | ||||||
| Assay | Assay External URL | https://idr.openmicroscopy.org/webclient/?show=screen-2152 | ELN or any other external url link to this screen. | ||||||
| Assay | Assay data URL | https://idr.openmicroscopy.org/webclient/?show=screen-2152 | OMERO url link to this screen. | ||||||
| AssayComponent | Imaging protocol | NA | Migratory tracks were visualized by acquiring whole-well montages (6 x 6 images) on a BD Pathway 855 BioImager using transmitted light and a x10 objective. | Url to protocols.io or protocols in ELN, at least protocol file name or free text description of imaging protocol | |||||
| AssayComponent | Sample preparation protocol | NA | Sample preparation method (Formaldahude (PFA) fixed tissue, Live cells, unfixed tissue). FBbi terms | ||||||
| Biosample | Cell lines storage location | NA | Storage location according to Database used or at least location e.g. Example -150 liquid N2 tank 4th floor GE4.xx | ||||||
| Biosample | Cell lines clone number | NA | Storage location DB info | ||||||
| Biosample | Cell lines Passage number | NA | Passage number of your cells. In case different passage number is used for the replicates, please indicate it in Comment_users. | ||||||
| ImageData | Image number of pixelsX | 672 | Indicate number of pixels in x in images | ||||||
| ImageData | Image number of pixelsY | 512 | Indicate number of pixels in y in images | ||||||
| ImageData | Image number of z-stacks | 1 | Indicate number z stacks in image, single image is z=1 | ||||||
| ImageData | Image number of channels | 1 | Indicate number of channels in your image, single channel image c=1, including your TD channel | ||||||
| ImageData | Image number of timepoints | 1 | Indicate number of time point(s) in your image | ||||||
| ImageData | Image sites per well | 36 | Number of fields, numeric value | ||||||
| ImageAcquisition | Microscope id | BD-pathway | Url to micrometa app file link or other url describing your microscope. At least Microscope name. | ||||||
| Specimen | Channel Transmission id | 1 | only transmission channel is recorded for this study. | Channel id is dependent on different machines, first or last. If No transmission is acquired state NA | |||||
| Specimen | Channel 1 visualization method | Visualization method (example: Hoechst staining ) | |||||||
| Specimen | Channel 1 entity | Entity visualized (example: DNA ) | |||||||
| Specimen | Channel 1 label | Label used for entity (example:Nuclei) Best practice to use similar label as your CP-pipeline | |||||||
| Specimen | Channel 1 id | sequential id of channel order in your image | |||||||
| Specimen | Channel 2 visualization method | Visualization method (example: GFP ) | |||||||
| Specimen | Channel 2 entity | Entity visualized (example: MAP1LC3B ) | |||||||
| Specimen | Channel 2 label | Label used for entity (example:GFP-LC3) Best practice to use similar label as your CP-pipeline | |||||||
| Specimen | Channel 2 id | sequential id of channel order in your image | |||||||
| Specimen | Channel 3 visualization method | Visualization method (example: PI staining ) | |||||||
| Specimen | Channel 3 entity | Entity visualized (example: Death cell DNA ) | |||||||
| Specimen | Channel 3 label | Label used for entity (example:PI) Best practice to use similar label as your CP-pipeline | |||||||
| Specimen | Channel 3 id | sequential id of channel order in your image | |||||||
| Specimen | Channel 4 visualization method | Visualization method (example: Apoptotic marker Annexin V staining ) | |||||||
| Specimen | Channel 4 entity | Entity visualized (example: Apoptotic cells ) | |||||||
| Specimen | Channel 4 label | Label used for entity (example:Annexin-V) Best practice to use similar label as your CP-pipeline | |||||||
| Specimen | Channel 4 id | sequential id of channel order in your image |
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| MDA231_plate_93c | E5 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | E5 | 53 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFRKB | 4798 | NM_006165 | 23346419 | D-015648-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | E6 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | E6 | 54 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SRY | 6736 | NM_003140 | 4507224 | D-011780-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | E7 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | E7 | 55 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SFRS2 | 6427 | NM_003016 | 4506898 | D-019711-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | E8 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | E8 | 56 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SMARCD3 | 6604 | NM_003078 | 51477703 | D-009459-05 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | E9 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | E9 | 57 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFIL3 | 4783 | NM_005384 | 52630428 | D-012704-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | F1 | siRNA | 50 | nmol | MDAMB231 | 72 | 59 | MDA231_plate_93c | 93c | F1 | 61 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | DNM2 | 1785 | NM_004945 | 56549118 | Positive | M-004007-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||||
| MDA231_plate_93c | F10 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | F10 | 70 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | NFRKB | 4798 | NM_006165 | 23346419 | D-015648-01 | D-015648-02 | D-015648-03 | D-015648-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||
| MDA231_plate_93c | F11 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | F11 | 71 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | HOXD9 | 3235 | NM_014213 | 23397673 | D-012494-01 | D-012494-02 | D-012494-03 | D-012494-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||
| MDA231_plate_93c | F12 | siRNA | 50 | nmol | MDAMB231 | 72 | 60 | MDA231_plate_93c | 93c | F12 | 72 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | DNM2 | 1785 | NM_004945 | 56549118 | Positive | M-004007-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||||
| MDA231_plate_93c | F2 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | F2 | 62 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFIC | 4782 | NM_005597 | 10835080 | D-008362-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | F3 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | F3 | 63 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | JUND | 3727 | NM_005354 | 102469036 | D-003900-10 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | F4 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | F4 | 64 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFIL3 | 4783 | NM_005384 | 52630428 | D-012704-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | F5 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | F5 | 65 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | MEF2B | 4207 | NM_005919 | 5174542 | D-009342-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | F6 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | F6 | 66 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SSX1 | 6756 | NM_005635 | 28559010 | D-019194-13 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | F7 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | F7 | 67 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | JUND | 3727 | NM_005354 | 102469036 | D-003900-09 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | F8 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | F8 | 68 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | PITX1 | 5307 | NM_002653 | 152963643 | D-017246-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | F9 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | F9 | 69 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | NFIC | 4782 | NM_005597 | 10835080 | D-008362-01 | D-008362-02 | D-008362-03 | D-008362-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||
| MDA231_plate_93c | G1 | siRNA | 50 | nmol | MDAMB231 | 72 | 91 | MDA231_plate_93c | 93c | G1 | 73 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | mock | Negative | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||||||
| MDA231_plate_93c | G10 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | G10 | 82 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | NFE2L1 | 4779 | NM_003204 | 4505378 | D-019733-02 | D-019733-04 | D-019733-05 | D-019733-06 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||
| MDA231_plate_93c | G11 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | G11 | 83 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | JUND | 3727 | NM_005354 | 102469036 | D-003900-25 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | G12 | siRNA | 50 | nmol | MDAMB231 | 72 | 92 | MDA231_plate_93c | 93c | G12 | 84 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | mock | Negative | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||||||
| MDA231_plate_93c | G2 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | G2 | 74 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SMARCD3 | 6604 | NM_003078 | 51477703 | D-009459-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | G3 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | G3 | 75 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SFRS2 | 6427 | NM_003016 | 4506898 | D-019711-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | G4 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | G4 | 76 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFE2L1 | 4779 | NM_003204 | 4505378 | D-019733-06 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | G5 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | G5 | 77 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | RBPJ | 3516 | NM_005349 | 32698679 | D-007772-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | G6 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | G6 | 78 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | HOXD9 | 3235 | NM_014213 | 23397673 | D-012494-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | G7 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | G7 | 79 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | FOSL2 | 2355 | NM_005253 | 34734077 | D-004110-01 | D-004110-02 | D-004110-03 | D-004110-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||
| MDA231_plate_93c | G8 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | G8 | 80 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | HOXB4 | 3214 | NM_024015 | 85376187 | D-012892-01 | D-012892-02 | D-012892-03 | D-012892-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||
| MDA231_plate_93c | G9 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | G9 | 81 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | MEF2B | 4207 | NM_005919 | 5174542 | D-009342-01 | D-009342-02 | D-009342-03 | D-009342-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||
| MDA231_plate_93c | H1 | siRNA | 50 | nmol | MDAMB231 | 72 | 60 | MDA231_plate_93c | 93c | H1 | 85 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | ILK | 3611 | NM_001014794 | 62420872 | M-004499-00 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | H10 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | H10 | 94 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | SSX1 | 6756 | NM_005635 | 28559010 | D-019194-02 | D-019194-03 | D-019194-04 | D-019194-13 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||
| MDA231_plate_93c | H11 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | H11 | 95 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | SMARCD3 | 6604 | NM_003078 | 51477703 | D-009459-01 | D-009459-02 | D-009459-03 | D-009459-05 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||
| MDA231_plate_93c | H12 | siRNA | 50 | nmol | MDAMB231 | 72 | 30 | MDA231_plate_93c | 93c | H12 | 96 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | GFP | P-002048-01 | D-001300-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||||||||
| MDA231_plate_93c | H2 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | H2 | 86 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | PAX1 | 5075 | NM_006192 | 153791841 | D-020120-18 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | H3 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | H3 | 87 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | PITX1 | 5307 | NM_002653 | 152963643 | D-017246-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | H4 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | H4 | 88 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SFRS2 | 6427 | NM_003016 | 4506898 | D-019711-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | H5 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | H5 | 89 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SRY | 6736 | NM_003140 | 4507224 | D-011780-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | H6 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | H6 | 90 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SSX1 | 6756 | NM_005635 | 28559010 | D-019194-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | H7 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | H7 | 91 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SMARCD3 | 6604 | NM_003078 | 51477703 | D-009459-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | H8 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | H8 | 92 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | PAX1 | 5075 | NM_006192 | 153791841 | D-020120-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | ||||||||
| MDA231_plate_93c | H9 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93c | 93c | H9 | 93 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | SRY | 6736 | NM_003140 | 4507224 | D-011780-01 | D-011780-02 | D-011780-03 | D-011780-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93c | |||||
| MDA231_plate_93d | A1 | siRNA | 50 | nmol | MDAMB231 | 72 | 31 | MDA231_plate_93d | 93d | A1 | 1 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | GFP | P-002048-01 | D-001300-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | |||||||||||
| MDA231_plate_93d | A10 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | A10 | 10 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFIC | 4782 | NM_005597 | 10835080 | D-008362-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | A11 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | A11 | 11 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFRKB | 4798 | NM_006165 | 23346419 | D-015648-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | A12 | siRNA | 50 | nmol | MDAMB231 | 72 | 61 | MDA231_plate_93d | 93d | A12 | 12 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | ILK | 3611 | NM_001014794 | 62420872 | M-004499-00 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | A2 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | A2 | 2 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | FOSL2 | 2355 | NM_005253 | 34734077 | D-004110-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | A3 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | A3 | 3 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | HOXB4 | 3214 | NM_024015 | 85376187 | D-012892-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | A4 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | A4 | 4 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | HOXD9 | 3235 | NM_014213 | 23397673 | D-012494-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | A5 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | A5 | 5 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | RBPJ | 3516 | NM_005349 | 32698679 | D-007772-01 | D-007772-02 | D-007772-03 | D-007772-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | |||||
| MDA231_plate_93d | A6 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | A6 | 6 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | JUND | 3727 | NM_005354 | 102469036 | D-003900-08 | D-003900-09 | D-003900-10 | D-003900-25 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | |||||
| MDA231_plate_93d | A7 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | A7 | 7 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFE2L1 | 4779 | NM_003204 | 4505378 | D-019733-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | A8 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | A8 | 8 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | MEF2B | 4207 | NM_005919 | 5174542 | D-009342-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | A9 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | A9 | 9 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFIL3 | 4783 | NM_005384 | 52630428 | D-012704-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | B1 | siRNA | 50 | nmol | MDAMB231 | 72 | 93 | MDA231_plate_93d | 93d | B1 | 13 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | mock | Negative | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||||||
| MDA231_plate_93d | B10 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | B10 | 22 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | PAX1 | 5075 | NM_006192 | 153791841 | D-020120-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | B11 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | B11 | 23 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | MEF2B | 4207 | NM_005919 | 5174542 | D-009342-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | B12 | siRNA | 50 | nmol | MDAMB231 | 72 | 94 | MDA231_plate_93d | 93d | B12 | 24 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | mock | Negative | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||||||
| MDA231_plate_93d | B2 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | B2 | 14 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | PITX1 | 5307 | NM_002653 | 152963643 | D-017246-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | B3 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | B3 | 15 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SFRS2 | 6427 | NM_003016 | 4506898 | D-019711-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | B4 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | B4 | 16 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SMARCD3 | 6604 | NM_003078 | 51477703 | D-009459-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | B5 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | B5 | 17 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SRY | 6736 | NM_003140 | 4507224 | D-011780-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | B6 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | B6 | 18 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | SFRS2 | 6427 | NM_003016 | 4506898 | D-019711-01 | D-019711-02 | D-019711-03 | D-019711-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | |||||
| MDA231_plate_93d | B7 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | B7 | 19 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SSX1 | 6756 | NM_005635 | 28559010 | D-019194-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | B8 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | B8 | 20 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SRY | 6736 | NM_003140 | 4507224 | D-011780-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | B9 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | B9 | 21 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | JUND | 3727 | NM_005354 | 102469036 | D-003900-08 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | C1 | siRNA | 50 | nmol | MDAMB231 | 72 | 61 | MDA231_plate_93d | 93d | C1 | 25 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | DNM2 | 1785 | NM_004945 | 56549118 | Positive | M-004007-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | |||||||
| MDA231_plate_93d | C10 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | C10 | 34 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | PITX1 | 5307 | NM_002653 | 152963643 | D-017246-01 | D-017246-02 | D-017246-03 | D-017246-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | |||||
| MDA231_plate_93d | C11 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | C11 | 35 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | RBPJ | 3516 | NM_005349 | 32698679 | D-007772-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | C12 | siRNA | 50 | nmol | MDAMB231 | 72 | 62 | MDA231_plate_93d | 93d | C12 | 36 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | DNM2 | 1785 | NM_004945 | 56549118 | Positive | M-004007-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | |||||||
| MDA231_plate_93d | C2 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | C2 | 26 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFIC | 4782 | NM_005597 | 10835080 | D-008362-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | C3 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | C3 | 27 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFRKB | 4798 | NM_006165 | 23346419 | D-015648-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | C4 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | C4 | 28 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFIL3 | 4783 | NM_005384 | 52630428 | D-012704-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | C5 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | C5 | 29 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | MEF2B | 4207 | NM_005919 | 5174542 | D-009342-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | C6 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | C6 | 30 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | HOXB4 | 3214 | NM_024015 | 85376187 | D-012892-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | C7 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | C7 | 31 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | FOSL2 | 2355 | NM_005253 | 34734077 | D-004110-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | C8 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | C8 | 32 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | HOXD9 | 3235 | NM_014213 | 23397673 | D-012494-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | C9 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | C9 | 33 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFIC | 4782 | NM_005597 | 10835080 | D-008362-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | D1 | siRNA | 50 | nmol | MDAMB231 | 72 | 62 | MDA231_plate_93d | 93d | D1 | 37 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | ILK | 3611 | NM_001014794 | 62420872 | M-004499-00 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | D10 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | D10 | 46 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFRKB | 4798 | NM_006165 | 23346419 | D-015648-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | D11 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | D11 | 47 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | FOSL2 | 2355 | NM_005253 | 34734077 | D-004110-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | D12 | siRNA | 50 | nmol | MDAMB231 | 72 | 95 | MDA231_plate_93d | 93d | D12 | 48 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | mock | Negative | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||||||
| MDA231_plate_93d | D2 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | D2 | 38 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SSX1 | 6756 | NM_005635 | 28559010 | D-019194-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | D3 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | D3 | 39 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFE2L1 | 4779 | NM_003204 | 4505378 | D-019733-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | D4 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | D4 | 40 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | RBPJ | 3516 | NM_005349 | 32698679 | D-007772-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | D5 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | D5 | 41 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | PAX1 | 5075 | NM_006192 | 153791841 | D-020120-17 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | D6 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | D6 | 42 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | PITX1 | 5307 | NM_002653 | 152963643 | D-017246-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | D7 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | D7 | 43 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | NFIL3 | 4783 | NM_005384 | 52630428 | D-012704-01 | D-012704-02 | D-012704-03 | D-012704-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | |||||
| MDA231_plate_93d | D8 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | D8 | 44 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | RBPJ | 3516 | NM_005349 | 32698679 | D-007772-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | D9 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | D9 | 45 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFE2L1 | 4779 | NM_003204 | 4505378 | D-019733-05 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | E1 | siRNA | 50 | nmol | MDAMB231 | 72 | 96 | MDA231_plate_93d | 93d | E1 | 49 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | mock | Negative | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||||||
| MDA231_plate_93d | E10 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | E10 | 58 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | PAX1 | 5075 | NM_006192 | 153791841 | D-020120-02 | D-020120-03 | D-020120-17 | D-020120-18 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | |||||
| MDA231_plate_93d | E11 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | E11 | 59 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | HOXB4 | 3214 | NM_024015 | 85376187 | D-012892-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | E12 | siRNA | 50 | nmol | MDAMB231 | 72 | 63 | MDA231_plate_93d | 93d | E12 | 60 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | smartpool | ILK | 3611 | NM_001014794 | 62420872 | M-004499-00 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | E2 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | E2 | 50 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | HOXB4 | 3214 | NM_024015 | 85376187 | D-012892-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | E3 | siRNA | 50 | nmol | MDAMB231 | 72 | 3 | MDA231_plate_93d | 93d | E3 | 51 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | FOSL2 | 2355 | NM_005253 | 34734077 | D-004110-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | E4 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | E4 | 52 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | HOXD9 | 3235 | NM_014213 | 23397673 | D-012494-02 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | E5 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | E5 | 53 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | NFRKB | 4798 | NM_006165 | 23346419 | D-015648-01 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | E6 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | E6 | 54 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SRY | 6736 | NM_003140 | 4507224 | D-011780-04 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | E7 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | E7 | 55 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SFRS2 | 6427 | NM_003016 | 4506898 | D-019711-03 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d | ||||||||
| MDA231_plate_93d | E8 | siRNA | 50 | nmol | MDAMB231 | 72 | 4 | MDA231_plate_93d | 93d | E8 | 56 | Homo sapiens | NCBITaxon | NCBITaxon_9606 | MDAMB231 | EFO | EFO_0001209 | single | SMARCD3 | 6604 | NM_003078 | 51477703 | D-009459-05 | ./Validation PKT screen MDA-MB-231/MDA231 hits validation set2/MDA231_plate_93d |
