Protein data of nuclear processes of P. cordatum

Selected Cell

Cell:

Value:

Nuclear proteins MBNP_Histones DNA replication DNA repair RNA processing Transcription Import_Export Ubiquitylation Proteasome Biogenesis Ribosomes Ribosomes

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(v.1.16.0-pre)

					relative share				No. of proteins					relative share				No. of proteins
Accession	Protein function	Protein function (translated)	Biological process	Kategory	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG		Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG
Pcordatum_s3379_g40455	O65819, Histone H2B.3 (LeH2B-3) (Fragment)	Histone H2 B.3_Core component of nucleosome_nucleosome assembly_DNA-binding	Histone	Nucleus	0.01872008129863878	0	0	0	1	0	0	0	Sum total	9.327949081378868	11.223464967377089	0.7851556990393208	3.2969321257045414	133	306	53	260
Pcordatum_s3803_g43191	Q9U7D0, Histone H4	Histone H4_Core component of nucleosome_nucleosome assembly_DNA-binding	Histone	Nucleus	0.006685743320942422	0	0	0	1	0	0	0		11.880381296081914	3.4042147485758987
Pcordatum_s6179_g55801	P35063, Histone H2AX	Histone H2 AX_Core component of nucleosome_nucleosome assembly_DNA-binding	Histone	Nucleus	0.0013371486641884844	0	0	0	1	0	0	0
Pcordatum_s19016_g84296	Q9U7D0, Histone H4	Histone H4_Core component of nucleosome_nucleosome assembly_DNA-binding	Histone	Nucleus	0	0.029904376825682474	0	0	0	1	0	0
Pcordatum_s7318_g60454	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (1)	Nuclear protein/DNA-binding	Nucleus	0.85577514508063	0.43505843858844556	0.03604507201178517	0.1902119864536989	1	1	1	1
Pcordatum_s32_g1358	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (2)	Nuclear protein/DNA-binding	Nucleus	0.8223464284759179	0.08618660938699943	0.03839583757777116	0.008066822683660291	1	1	1	1
Pcordatum_s10881_g71455	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (3)	Nuclear protein/DNA-binding	Nucleus	0.5816596689219907	0.013777720585174964	0.018806124527887914	0	1	1	1	0
Pcordatum_s1890_g28673	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (4)	Nuclear protein/DNA-binding	Nucleus	0.48271066777204286	0	0	0	1	0	0	0
Pcordatum_s9136_g66650	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (5)	Nuclear protein/DNA-binding	Nucleus	0.2767897734870163	0	0	0	1	0	0	0
Pcordatum_s961_g18642	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (6)	Nuclear protein/DNA-binding	Nucleus	0.09627470382157088	0.08945284653968573	0	0.04160943249441791	1	1	0	1
Pcordatum_s1890_g28674	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (7)	Nuclear protein/DNA-binding	Nucleus	0	0	0.013321004873920607	0	0	0	1	0
Pcordatum_s150_g4897	A0A812PI39, HCc2 protein (major basic nuclear protein in Crypthecodinium cohnii)	Histone-like protein_DNA binding (8)	Nuclear protein/DNA-binding	Nucleus	0	0	0	5.326891130387164E-4	0	0	0	1
Pcordatum_s594_g13510	K9NVA6, Dinoflagellate viral nucleoprotein 5 (DNVP5)	DNA-binding protein_similarly to histones_compact DNA into chromatin	Nucleus_Viral proteins	Nucleus	0.022731527291204236	0	0	0	1	0	0	0
Pcordatum_s4916_g49685	A0A401GH42, ATP-dependent DNA helicase (EC 3.6.4.12), Q7ZV90, DNA helicase	DNA helicase PIF1_ATP-dependent_nuclear genome stability_DNA duplex unwinding	DNA-recombination/replication/repair_DNA helicase	Nucleus	0	2.2803483002506062E-4	0	0	0	1	0	0
Pcordatum_s14173_g78269	Q6MHJ5, ATP-dependent DNA helicase pif1 (EC 3.6.4.12), Q6MHJ5, DNA helicase	DNA helicase PIF1_ATP-dependent_nuclear genome stability_DNA duplex unwinding	DNA-recombination/replication_DNA helicase	Nucleus	0.08022891985130906	0.0035272461149431517	0.008619473741948627	0.0024253970564809915	1	1	1	1
Pcordatum_s7048_g59424	A0A7S2I6F9, Hypothetical protein (Fragment), Q5R874, RNA helicase	RNA helicase A_ATP-dependent_DNA duplex unwinding	DNA-recombination/replication_mRNA-processing/splicing	Nucleus	0	0	0	5.199238653730271E-4	0	0	0	1
Pcordatum_s1498_g24730	P22840, DNA gyrase subunit B (EC 5.6.2.2) (Fragment), O24308, DNA topoisomerase (ATP-hydrolysing)	DNA topoisomerase 2_double-strand breaks_DNA topological change	DNA-recombination/replication/integration_DNA-Topoisomeras	Nucleus	0.01872008129863878	0	0	0	1	0	0	0
Pcordatum_s22_g970	Q9Z321, DNA topoisomerase 3-beta-1 (EC 5.6.2.1) (DNA topoisomerase III beta-1), Q9Z321, DNA topoisomerase	DNA topoisomerase 3-beta-1_chromosome segregation_DNA topological change	DNA-recombination/replication/integration_DNA-Topoisomeras	Nucleus	0	0	0	4.477482206611183E-4	0	0	0	1
Pcordatum_s4632_g48145	O96821, Cell division control protein 2 homolog (EC 2.7.11.22) (EC 2.7.11.23), O96821, [RNA-polymerase]-subunit kinase;cyclin-dependent kinase	Involved in the control of the cell cycle	DNA-recombination/replication/integration	Nucleus	0	0.005484233311953337	0	0.0018128309509651153	0	1	0	1
Pcordatum_s17443_g82798	O94247, DNA polymerase alpha-associated DNA helicase A (EC 3.6.4.12), P30771, Hydrolases acting on acid anhydrides acting on acid anhydrides to facilitate cellular and subcellular movement	DNA polymerase alpha-associated DNA helicase A_DNA duplex unwinding_mitotic DNA replication lagging strand elongation	DNA-recombination/replication/integration	Nucleus	0	0	0	5.376324438939067E-4	0	0	0	1
Pcordatum_s4125_g45180	Q9MAY3, Proliferating cell nuclear antigen (PCNA)	PCNA_auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication	DNA-recombination/replication/integration	Nucleus	0	0.00786755689806322	0	0.0029770004384930726	0	1	0	1
Pcordatum_s14759_g79259	Q9D0F6, Replication factor C subunit 5 (Activator 1 36 kDa subunit) (A1 36 kDa subunit) (Activator 1 subunit 5) (Replication factor C 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36), P09122, DNA-directed DNA polymerase	Replication factor C subunit 5_elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1	DNA-recombination/replication/integration	Nucleus	0	0.0039859693661095505	0	0	0	1	0	0
Pcordatum_s6721_g58095	Q99J62, Replication factor C subunit 4 (Activator 1 subunit 4), P75177, DNA-directed DNA polymerase	Replication factor C subunit 4_DNA-dependent DNA replication_DNA duplex unwinding	DNA-recombination/replication/integration_DNA-polymerase_DNA-directed	Nucleus	0	8.602420381048406E-4	0	0	0	1	0	0
Pcordatum_s728_g15476	P07746, High mobility group-T protein (HMG-T) (HMG-T1) (HMG-1)	DNA-binding protein_single-stranded DNA and unwinds double-stranded DNA	DNA-recombination/replication/integration	Nucleus	0.0427887572540315	0	0	0	1	0	0	0
Pcordatum_s704_g15125	P26586, High mobility group protein homolog TDP-1	DNA-binding protein_single-stranded DNA and unwinds double-stranded DNA	DNA-recombination/replication/integration	Nucleus	0.1283662717620945	0	0	0	1	0	0	0
Pcordatum_s2063_g30252	A0A813IKA3, Hypothetical protein, P20825, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon 297_DNA integration	Viral protein_DNA-integration	Nucleus	0.038777311261466045	0.02262621441563996	0	0.0074642788800307	1	1	0	1
Pcordatum_s12958_g76026	A0A813JVA5, Hypothetical protein (Fragment), P10978, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon TNT 1-94_DNA integration	Viral protein_DNA-integration	Nucleus	0	0.009146355808142713	0	0	0	1	0	0
Pcordatum_s8264_g63877	A0A812T380, Hypothetical protein, Q9ZT94, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon RE2_DNA integration	Viral protein_DNA-integration	Nucleus	0	0	0	0.04811533817602926	0	0	0	1
Pcordatum_s4035_g44632	A0A813KKV1, Hypothetical protein, Q94HW2, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon RE1_DNA integration	Viral protein_DNA-integration	Nucleus	0	0.005445154470104328	0	0.008040448205012173	0	1	0	1
Pcordatum_s9195_g66831	P16423, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM_DNA integration	Viral protein_DNA-integration	Nucleus	0	0.0035414566028882464	0	0.0029893587656310483	0	1	0	1
Pcordatum_s636_g14135	Q29Q26, Ankyrin repeat domain-containing protein 2B, Q9ZT94, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon RE2_DNA integration	Viral protein_DNA-integration	Nucleus	0.022731527291204236	8.708056508272911E-4	0.018806124527887914	0.0013095154715750752	1	1	1	1
Pcordatum_s2824_g36562	A0A7S2TII6, Hypothetical protein, P16423, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM_DNA integration	Viral protein_DNA-integration	Nucleus	0.006685743320942422	0	0	0	1	0	0	0
Pcordatum_s1811_g27907	A0A813KE51, Hypothetical protein, Q03278, RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2_DNA integration	Viral protein_DNA-integration	Nucleus	0	0	0.007052296697957968	0	0	0	1	0
Pcordatum_s2551_g34443	A0A1D1VPG0, Uncharacterized protein, P15594, RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrotransposable element SLACS 132 kDa protein2_DNA integration	Viral protein_DNA-integration	Nucleus	0	5.325017844976665E-4	0	0	0	1	0	0
Pcordatum_s543_g12640	A0A813HGK6, Hypothetical protein, P08548, RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_LINE-1 reverse transcriptase homolog_DNA integration	Viral protein_DNA-integration	Nucleus	0	2.1431735900867332E-4	0	0	0	1	0	0
Pcordatum_s320_g8654	A0A5F8H4E3, Reverse transcriptase domain-containing protein, P08548, RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_LINE-1 reverse transcriptase homolog_DNA integration	Viral protein_DNA-integration	Nucleus	0	1.1871557633315347E-4	0	0	0	1	0	0
Pcordatum_s107_g3736	A0A7S4UA22, Hypothetical protein, Q008X6, RNA helicase;DNA helicase;Hydrolases acting on ester bonds;RNA-directed RNA polymerase;Transferases transferring one-carbon groups methyltransferases;Hydrolases acting on peptide bonds (peptidases) serine endopeptidases	Viral RNA replication_Replicase polyprotein 1ab_methylation_transcription, DNA-templated	Viral protein	Nucleus	0	0	0.007052296697957968	0	0	0	1	0
Pcordatum_s2242_g31841	A0A1Q9BWJ7, Copia protein, P10978, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon TNT 1-94_DNA integration	Viral protein_DNA-integration	Nucleus	0.022731527291204236	0	0	0	1	0	0	0
Pcordatum_s1368_g23370	A0A812QMR8, RE1 protein, Q94HW2, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon TNT 1-94_DNA integration	Viral protein_DNA-integration	Nucleus	0.008022891985130906	0	0	0	1	0	0	0
Pcordatum_s4265_g46006	A0A1Q9CTG4, Reverse transcriptase domain-containing protein, Q82851, DNA-directed DNA polymerase;retroviral ribonuclease H;Transferases transferring phosphorus-containing groups nucleotidyltransferases;Hydrolases acting on ester bonds;Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;exoribonuclease H;RNA-directed DNA polymerase	Gag-Pol polyprotein_Viral DNA-directed DNA polymerase_DNA integration	DNA-recombination/replication/integration	Nucleus	0.002674297328376969	0	0	0	1	0	0	0
Pcordatum_s8589_g64989	A0A2E6D6E1, Reverse transcriptase Ty1/copia-type domain-containing protein, P10978, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral_Retrovirus-related Pol polyprotein Ty1/copia-type domain-containing protein_DNA integration	Viral protein_DNA-integration	Nucleus	0	1.3984280177805448E-4	0	0	0	1	0	0
Pcordatum_s7111_g59680	A0A1Q9BW95, Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment), P04146, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases	Viral_Retrovirus-related Pol polyprotein from transposon TNT 1-94_DNA integration	Viral protein_DNA-integration	Nucleus	0	0	0	9.833159196551437E-4	0	0	0	1
Pcordatum_s7270_g60274	A0A813D6L0, Hypothetical protein, P04146, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases	Aspartyl protease_viral DNA integration_Pol polyprotein	Viral_Pol polyprotein_DNA integration	Nucleus	0	0	0.009403062263943957	0	0	0	1	0
Pcordatum_s4062_g44813	A0A1Q9ETT6, Copia protein, P04146, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases	Aspartyl protease_viral DNA integration_Pol polyprotein	Viral_Pol polyprotein_DNA integration	Nucleus	0	5.93686635400041E-4	0	0.00145287960194092	0	1	0	1
Pcordatum_s820_g16762	P25600, Putative transposon Ty5-1 protein YCL074W, Q94HW2, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon TNT 1-94_DNA integration	Viral protein_DNA-integration	Nucleus	0.008022891985130906	0	0	0	1	0	0	0
Pcordatum_s19245_g84463	A0A7S0A5X2, Hypothetical protein, O13535, DNA-directed DNA polymerase;Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;ribonuclease H;RNA-directed DNA polymerase	Transposon Ty1-H Gag-Pol polyprotein_Viral DNA-directed DNA polymerase_Transposon Ty1-H Gag-Pol polyprotein_DNA integration	Viral protein_DNA-integration	Nucleus	0	0.008698631184635859	0	0.002997798598798446	0	1	0	1
Pcordatum_s279_g7787	A0A7S3M3V3, Hypothetical protein (Fragment), P12502, DNA-directed DNA polymerase;retroviral ribonuclease H;Transferases transferring phosphorus-containing groups nucleotidyltransferases;Hydrolases acting on ester bonds;exoribonuclease H;HIV-1 retropepsin;RNA-directed DNA polymerase	Gag-Pol polyprotein_Viral DNA-directed DNA polymerase_DNA integration	Viral protein_DNA-integration	Nucleus	0	0.0068999169222386395	0	0	0	1	0	0
Pcordatum_s2396_g33223	O19048, Poly(rC)-binding protein 1 (Alpha-CP1) (Heterogeneous nuclear ribonucleoprotein E1) (hnRNP E1)	Poly(rC)-binding protein 1_Ribonucleoprotein_viral RNA genome replication	Ribonucleoprotein_viral RNA genome replication	Nucleus	0	0.014524786237145659	0	0.005102481994918314	0	1	0	1
Pcordatum_s2734_g35849	Q15366, Poly(rC)-binding protein 2 (Alpha-CP2) (Heterogeneous nuclear ribonucleoprotein E2) (hnRNP E2), Q28K17, polyribonucleotide nucleotidyltransferase	Poly(rC)-binding protein 2_viral RNA genome replication_Single-stranded nucleic acid binding protein	Viral protein_DNA replication	Nucleus	0.07488032519455512	0.12196368786346083	0	0.002643174894461171	1	1	0	1
Pcordatum_s17111_g82438	A0A1Q9ERZ7, LINE-1 retrotransposable element ORF2 protein, P11369, RNA-directed DNA polymerase;Hydrolases acting on ester bonds endodeoxyribonucleases producing 5\'-phosphomonoesters	RNA-directed DNA polymerase_DNA recombination	DNA-recombination/replication/integration_DNA-polymerase_RNA-directed	Nucleus	0	6.331569906924368E-4	0	0	0	1	0	0
Pcordatum_s318_g8612	P34730, Protein BMH2	BMH2_DNA damage checkpoint signaling_DNA replication initiation	DNA-recombination/replication/integration_damage-checkpoint signaling	Nucleus	0.07488032519455512	0.10187542309332108	0.02350765565985989	0.04160762395873918	1	1	1	1
Pcordatum_s2433_g33523	P34730, Protein BMH2	BMH2_DNA damage checkpoint signaling_DNA replication initiation	DNA-recombination/replication/integration_damage-checkpoint signaling	Nucleus	0.041451608589843016	0.04864119519124791	0	0.02616725060159772	1	1	0	1
Pcordatum_s2841_g36691	Q9DE27, RuvB-like 2 (EC 3.6.4.12) (Reptin), Q9DE27, DNA helicase	DNA helicase_RuvB-like 2_ core component of the chromatin remodeling INO80 complex	DNA-recombination/replication/repair_DNA helicase	Nucleus	0.014708635306073328	0.0011770054147993243	0.006268708175962638	0	1	1	1	0
Pcordatum_s19050_g84322	Q9DE27, RuvB-like 2 (EC 3.6.4.12) (Reptin), Q9DE27, DNA helicase	DNA helicase_RuvB-like 2_ core component of the chromatin remodeling INO80 complex	DNA-recombination/replication/repair_DNA helicase	Nucleus	0	0.030866484861557	0	0.01027383905693486	0	1	0	1
Pcordatum_s11019_g71801	A0A5A8D0A9, RRM domain-containing protein	ATP-dependent DNA helicase RRM3_DNA duplex unwinding_DNA-repair/replication	DNA-recombination/replication/integration	Nucleus	0.013371486641884844	0.062215836303289154	0	0.0010388530361227534	1	1	0	1
Pcordatum_s639_g14175	A0A1Q9ELG4, RRM domain-containing protein	ATP-dependent DNA helicase RRM3_DNA duplex unwinding_DNA-repair/replication	DNA-recombination/replication/integration	Nucleus	0.01872008129863878	0.03983975547647867	0	0.002041716212238817	1	1	0	1
Pcordatum_s87_g3177	A0A7S3M0Y9, Hypothetical protein, Q97VY9, DNA helicase	ATP-dependent DNA helicase Hel308_DNA damage,_DNA repair	DNA-repair/damage	Nucleus	0	0	0	0.003921508196708842	0	0	0	1
Pcordatum_s1974_g29482	A0A813DR07, Hypothetical protein (Fragment), Q8VEG4, exodeoxyribonuclease I	Double-strand break repair_Exonuclease 3'-5' domain-containing protein 2_DNA double-strand break processing	DNA-repair/damage_DNA double-strand break processing	Nucleus	0	0.012416196334557957	0	0	0	1	0	0
Pcordatum_s4077_g44895	A0A516AG34, NAD(P)(+)--arginine ADP-ribosyltransferase (EC 2.4.2.31) (Mono(ADP-ribosyl)transferase) (Fragment), O88554, Transferases glycosyltransferases pentosyltransferases;NAD+ ADP-ribosyltransferase	Double-strand break repair_Base-excision repair_Poly [ADP-ribose] polymerase 2	DNA-repair/damage_base-excision repair	Nucleus	0.017382932634450298	0	0	0	1	0	0	0
Pcordatum_s859_g17303	A0A812S7M1, Fan1 protein, Q5XVJ4, phosphodiesterase I	Homologous chromosome pairing at meiosis_interstrand cross-link repair	DNA-repair/damage	Nucleus	0.05883454122429331	0.07273884763161081	0	0.003333055900242675	1	1	0	1
Pcordatum_s8716_g65340	A0A7S2DKF4, Hypothetical protein (Fragment), A8LK52, DNA ligase (NAD+)	DNA ligase_DNA repair	DNA-recombination/replication/integration_DNA-polymerase_RNA-directed	Nucleus	0.0681945818736127	0.0016923748610244097	0	0	1	1	0	0
Pcordatum_s1190_g21413	A0A812U9D2, Parp1 protein, P27008, Transferases glycosyltransferases pentosyltransferases;NAD+ ADP-ribosyltransferase	Poly [ADP-ribose] polymerase 1 protein_base-excision repair	DNA repair/damage	Nucleus	0	0.0019068879767547755	0	0	0	1	0	0
Pcordatum_s9436_g67583	A0A7S1WQ66, Hypothetical protein, Q9VNV3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.23801246222555023	0.026466743787780835	0.014888181917911265	0.01473971649294087	1	1	1	1
Pcordatum_s2971_g37619	A0A7S0FSP9, Hypothetical protein, Q9VNV3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.14307490706816783	0.013649463681221535	0	0.029981000214115677	1	1	0	1
Pcordatum_s1870_g28486	A0A7S1F1H0, Hypothetical protein (Fragment), Q90WU3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.10162329847832481	0.023408081262578234	0	0.013141573798171442	1	1	0	1
Pcordatum_s2303_g32387	A0A7S2KVR9, Hypothetical protein (Fragment), A2VD92, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.04680020324659696	0.004122201543909718	0	0.003220097775975446	1	1	0	1
Pcordatum_s5494_g52573	A0A7S4UZF8, Hypothetical protein (Fragment), A2VD92, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.01872008129863878	0.02035761151869091	0	0.015977207031110597	1	1	0	1
Pcordatum_s4160_g45392	A0A7S1F1H0, Hypothetical protein (Fragment), Q90WU3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.017382932634450298	2.468709768012627E-4	0.0023507655659859893	0.0030127416248439376	1	1	1	1
Pcordatum_s1957_g29298	A0A813JMV3, Hypothetical protein, Q9VNV3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.013371486641884844	0.0030727642594134256	0	0.0037927253852527427	1	1	0	1
Pcordatum_s3047_g38169	A0A7S0FV17, Hypothetical protein (Fragment), Q9VNV3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0	0.005236202295319822	0	0.0053241783268690715	0	1	0	1
Pcordatum_s363_g9492	A0A7S1F1H0, Hypothetical protein (Fragment), Q90WU3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0	0.002371048914634859	0	0.006785595724326654	0	1	0	1
Pcordatum_s3047_g38170	A0A7S2QHJ2, Hypothetical protein (Fragment), Q9VNV3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0	0	0	0.0023323705025064126	0	0	0	1
Pcordatum_s7354_g60595	Q6XJU9, Osteoclast-stimulating factor 1 (Osteoclast-stimulating factor-like), Q9TXQ1, NAD+ ADP-ribosyltransferase;Transferases glycosyltransferases pentosyltransferases	Double-strand break repair_cellular response to DNA damage stimulus	DNA-repair/damage	Nucleus	0	0	0.004701531131971979	0	0	0	1	0
Pcordatum_s1963_g29363	Q6GL04, vesicle-fusing ATPase	Double-strand break repair_Transitional endoplasmic reticulum ATPase	DNA-repair/damage_Autophagy	Nucleus	0	8.839503521765037E-4	0	0.003225824805624752	0	1	0	1
Pcordatum_s12793_g75715	P53041, Serine/threonine-protein phosphatase 5 (PP5) (EC 3.1.3.16) (Protein phosphatase T) (PP-T) (PPT), P53041, protein-serine/threonine phosphatase	Double-strand break repair_Serine/threonine-protein phosphatase 5	DNA-repair/damage_DNA double-strand break processing	Nucleus	0.36370443665926777	0.10655835889114591	0.08854550298547226	0.06729561260547394	1	1	1	1
Pcordatum_s2381_g33121	O74859, Aprataxin-like protein (EC 3.6.1.71) (EC 3.6.1.72) (Hit family protein 3), P61802, DNA-3\'-diphospho-5\'-guanosine diphosphatase;adenosine-5\'-diphospho-5\'-[DNA] diphosphatase	Double-strand break repair_mismatch repair	DNA-repair/damage_DNA double-strand break processing	Nucleus	0.01203433797769636	0.005831810246692032	0	0.0014280273074890645	1	1	0	1
Pcordatum_s1820_g28008	Q08E38, RING-type E3 ubiquitin transferase	Pre-mRNA-processing factor 19_DNA damage checkpoint signaling/PRP19C/Prp19 complex	DNA-repair/damage_Ubiquitin conjugation pathway	Nucleus	0	0.005393242687611021	0	0	0	1	0	0
Pcordatum_s2100_g30583	A0A7S3X8A6, Hypothetical protein (Fragment), Q5ZMA2, RING-type E3 ubiquitin transferase	Pre-mRNA-processing factor 19_DNA damage checkpoint signaling/PRP19C/Prp19 complex	DNA-repair/damage_Ubiquitin conjugation pathway	Nucleus	0	0.003752221339910646	0	0	0	1	0	0
Pcordatum_s1542_g25226	A0A812KZ61, POC1B protein, Q5ZMA2, RING-type E3 ubiquitin transferase	Pre-mRNA-processing factor 19_DNA repair, PRP19C/Prp19 complex	DNA-repair/damage_Ubiquitin conjugation pathway	Nucleus	0.004011445992565453	0	0	0	1	0	0	0
Pcordatum_s3608_g41991	Q96FW1, Ubiquitin thioesterase OTUB1 (EC 3.4.19.12) (Deubiquitinating enzyme OTUB1) (OTU domain-containing ubiquitin aldehyde-binding protein 1) (Otubain-1) (hOTU1) (Ubiquitin-specific-processing protease OTUB1), Q96FW1, ubiquitinyl hydrolase 1	Ubiquitin thioesterase OTUB1_non-catalytic role in DNA repair _cellular response to DNA damage stimulus_DNA repair	DNA_repair_Ubiquitin_Ubl conjugation pathway	Nucleus	0	0	0	0.0024074548754349423	0	0	0	1
Pcordatum_s3474_g41099	Q99NB8, Ubiquilin-4 (Ataxin-1 interacting ubiquitin-like protein) (A1Up) (Ataxin-1 ubiquitin-like-interacting protein A1U) (Connexin43-interacting protein of 75 kDa) (CIP75), Q9JK66, RBR-type E3 ubiquitin transferase	Ubiquilin_Regulator of protein degradation_DNA repair	DNA_repair_Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.003980386674416835	0	0	0	1	0	0
Pcordatum_s7698_g61890	O74803, UV excision repair protein rhp23 (RAD23 homolog)	Repair protein rhp23_nucleotide-excision repair	DNA-repair/damage	Nucleus	0	0.0011921584351081242	0	0	0	1	0	0
Pcordatum_s5695_g53602	Q28811, Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA photolyase) (Photoreactivating enzyme), Q28811, deoxyribodipyrimidine photo-lyase	Deoxyribodipyrimidine photo-lyase_protein-chromophore linkage	DNA-repair/damage	Nucleus	0.028080121947958173	0	0	0	1	0	0	0
Pcordatum_s617_g13856	Q10301, UPF0652 protein C22H10.08, Q8K1E6, mRNA N1-methyladenine demethylase	DNA-dealkylation_oxidative single-stranded DNA demethylation	DNA-repair/damage	Nucleus	0	0	0.007835885219953298	0	0	0	1	0
Pcordatum_s6331_g56483	A0A7S1WQN9, Sugar phosphate phosphatase (EC 3.1.3.-) (Fragment), O94725, Hydrolases acting on ester bonds phosphoric-monoester hydrolases	Damage-control phosphatase_regulation of response to DNA damage stimulus	DNA-repair/damage_regulation of response to DNA damage stimulus	Nucleus	0	0.016164865052482328	0.0015671770439906595	0.004025370893625133	0	1	1	1
Pcordatum_s4874_g49461	A0A7S2N0P4, Hypothetical protein (Fragment), Q54VI1, non-specific serine/threonine protein kinase	DNA damage checkpoint signaling_Kinase, Serine/threonine-protein kinase, Transferase	DNA-repair/damage_regulation of response to DNA damage stimulus	Nucleus	0	0.008877277318802763	0	0	0	1	0	0
Pcordatum_s5221_g51203	Q54MH0, non-specific serine/threonine protein kinase	DNA damage checkpoint signaling_Kinase, Serine/threonine-protein kinase, Transferase	DNA-repair/damage_regulation of response to DNA damage stimulus	Nucleus	0	0.0011169733534802505	0	0.004638215815058145	0	1	0	1
Pcordatum_s11304_g72503	Q90WU3, ATP-dependent RNA helicase DDX1 (EC 3.6.4.13) (DEAD box protein 1), Q90WU3, RNA helicase	RNA helicase DDX1_ATP-dependent_DNA duplex unwinding_DNA repair_double-strand break repair	DNA repair/damage	Nucleus	0	0	0	0.0017363374273202433	0	0	0	1
Pcordatum_s8954_g66098	A0A7S1WBK9, Hypothetical protein (Fragment), Q9EPU0, Hydrolases acting on acid anhydrides acting on acid anhydrides to facilitate cellular and subcellular movement	RNA-helicase_Regulator of nonsense transcripts 1_Nonsense-mediated mRNA decay_DNA repair	DNA repair/damage	Nucleus	0	0	0	9.664061110590356E-4	0	0	0	1
Pcordatum_s5196_g51086	A0A7S1Q388, Hypothetical protein (Fragment), Q8H136, RNA helicase	RNA helicase 14_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosomebiogenesis_rRNA-processing	Nucleus	0	0	0	0.01600885640548834	0	0	0	1
Pcordatum_s2064_g30255	A0A7S3HIK2, Hypothetical protein (Fragment), Q5N7W4, RNA helicase	RNA helicase 30_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosomebiogenesis_rRNA-processing	Nucleus	0	0	0	0.0061531658686060815	0	0	0	1
Pcordatum_s6523_g57287	A0A7S1Q5B2, Hypothetical protein (Fragment), Q8W4R3, RNA helicase	RNA helicase 30_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosome biogenesis/Nonsense-mediated mRNA decay/rRNA processing	Nucleus	0	0	0	5.898237693558694E-4	0	0	0	1
Pcordatum_s9712_g68359	A0A7S2Q7H8, Hypothetical protein (Fragment), Q9LYJ9, RNA helicase	RNA helicase 46_DEAD-box ATP-dependent	RNA helicase	Nucleus	0.004011445992565453	0	0	0	1	0	0	0
Pcordatum_s6750_g58210	Q9LYJ9, RNA helicase	RNA helicase 46_DEAD-box ATP-dependent	RNA helicase	Nucleus	0	0	0	0.021822168277800095	0	0	0	1
Pcordatum_s7447_g60947	A0A7S2AJ90, Hypothetical protein (Fragment), Q6FLF3, RNA helicase	RNA helicase DBP2_DEAD-box ATP-dependent	RNA helicase_Ribosome biogenesis/Nonsense-mediated mRNA decay/rRNA processing	Nucleus	0	0.006050187745113588	0	0.0039754628444575646	0	1	0	1
Pcordatum_s132_g4421	B7P8J4, RNA helicase (EC 3.6.4.13) (Fragment), Q59LU0, RNA helicase	RNA helicase DBP2_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosomebiogenesis_rRNA-processing	Nucleus	0	0.006037050294013328	0	0.013867248739261106	0	1	0	1
Pcordatum_s5792_g54056	Q59LU0, RNA helicase	RNA helicase DBP2_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosomebiogenesis_rRNA-processing	Nucleus	0	0.001881874617871828	0	0	0	1	0	0
Pcordatum_s883_g17604	A0A813L2F3, Hypothetical protein, P24782, RNA helicase	RNA helicase dbp2_DEAD-box ATP-dependent_Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosome biogenesis/Nonsense-mediated mRNA decay/rRNA processing	Nucleus	0	0	0	0.0013325441592175467	0	0	0	1

					relative share				No. of proteins					relative share				No. of proteins
Accession	Protein function	Protein function (translated)	Biological process	Kategory	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG		Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG
													Sum total	3.165030888134143	0.6543799919259883	0.10656803899136483	0.24042093074481585	10	5	4	4
	Histones													29.699625873669348	2.721809577472067

Pcordatum_s3379_g40455	O65819, Histone H2B.3 (LeH2B-3) (Fragment)	Histone H2 B.3_Core component of nucleosome_nucleosome assembly_DNA-binding	Histone	Nucleus	0.01872008129863878	0	0	0	1	0	0	0
Pcordatum_s3803_g43191	Q9U7D0, Histone H4	Histone H4_Core component of nucleosome_nucleosome assembly_DNA-binding	Histone	Nucleus	0.006685743320942422	0	0	0	1	0	0	0
Pcordatum_s6179_g55801	P35063, Histone H2AX	Histone H2 AX_Core component of nucleosome_nucleosome assembly_DNA-binding	Histone	Nucleus	0.0013371486641884844	0	0	0	1	0	0	0
Pcordatum_s19016_g84296	Q9U7D0, Histone H4	Histone H4_Core component of nucleosome_nucleosome assembly_DNA-binding	Histone	Nucleus	0	0.029904376825682474	0	0	0	1	0	0

				Sum	0.026742973283769688	0.029904376825682474	0	0	3	1	0	0
					Nuclei	Nuclei
	MBNP

Pcordatum_s7318_g60454	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (1)	Nuclear protein/DNA-binding	Nucleus	0.85577514508063	0.43505843858844556	0.03604507201178517	0.1902119864536989	1	1	1	1
Pcordatum_s32_g1358	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (2)	Nuclear protein/DNA-binding	Nucleus	0.8223464284759179	0.08618660938699943	0.03839583757777116	0.008066822683660291	1	1	1	1
Pcordatum_s10881_g71455	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (3)	Nuclear protein/DNA-binding	Nucleus	0.5816596689219907	0.013777720585174964	0.018806124527887914	0	1	1	1	0
Pcordatum_s1890_g28673	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (4)	Nuclear protein/DNA-binding	Nucleus	0.48271066777204286	0	0	0	1	0	0	0
Pcordatum_s9136_g66650	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (5)	Nuclear protein/DNA-binding	Nucleus	0.2767897734870163	0	0	0	1	0	0	0
Pcordatum_s961_g18642	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (6)	Nuclear protein/DNA-binding	Nucleus	0.09627470382157088	0.08945284653968573	0	0.04160943249441791	1	1	0	1
Pcordatum_s1890_g28674	Q01238, Major basic nuclear protein 2 (Protein p14 alpha chain)	Histone-like protein_DNA binding (7)	Nuclear protein/DNA-binding	Nucleus	0	0	0.013321004873920607	0	0	0	1	0
Pcordatum_s150_g4897	A0A812PI39, HCc2 protein (major basic nuclear protein in Crypthecodinium cohnii)	Histone-like protein_DNA binding (8)	Nuclear protein/DNA-binding	Nucleus	0	0	0	5.326891130387164E-4	0	0	0	1

				Sum	3.115556387559169	0.6244756151003058	0.10656803899136483	0.24042093074481585	6	4	4	4
					29.23537316672986	2.5974261607161306
	Viral proteins

Pcordatum_s594_g13510	K9NVA6, Dinoflagellate viral nucleoprotein 5 (DNVP5)	DNA-binding protein_similarly to histones_compact DNA into chromatin	Nucleus_Viral proteins	Nucleus	0.022731527291204236	0	0	0	1	0	0	0

					relative share				No. of proteins					relative share				No. of proteins
Accession	Protein function	Protein function (translated)	Biological process	Kategory	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG		Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG
													Sum total	0.5709624796084828	0.3684191311465617	0.07444090958955632	0.1575939980442564	14	23	6	18
	Replication fork													7.670009444492144	2.3377738728546014
Pcordatum_s4916_g49685	A0A401GH42, ATP-dependent DNA helicase (EC 3.6.4.12), Q7ZV90, DNA helicase	DNA helicase PIF1_ATP-dependent_nuclear genome stability_DNA duplex unwinding	DNA-recombination/replication/repair_DNA helicase	Nucleus	0	2.2803483002506062E-4	0	0	0	1	0	0
Pcordatum_s14173_g78269	Q6MHJ5, ATP-dependent DNA helicase pif1 (EC 3.6.4.12), Q6MHJ5, DNA helicase	DNA helicase PIF1_ATP-dependent_nuclear genome stability_DNA duplex unwinding	DNA-recombination/replication_DNA helicase	Nucleus	0.08022891985130906	0.0035272461149431517	0.008619473741948627	0.0024253970564809915	1	1	1	1
Pcordatum_s7048_g59424	A0A7S2I6F9, Hypothetical protein (Fragment), Q5R874, RNA helicase	RNA helicase A_ATP-dependent_DNA duplex unwinding	DNA-recombination/replication_mRNA-processing/splicing	Nucleus	0	0	0	5.199238653730271E-4	0	0	0	1
Pcordatum_s1498_g24730	P22840, DNA gyrase subunit B (EC 5.6.2.2) (Fragment), O24308, DNA topoisomerase (ATP-hydrolysing)	DNA topoisomerase 2_double-strand breaks_DNA topological change	DNA-recombination/replication/integration_DNA-Topoisomeras	Nucleus	0.01872008129863878	0	0	0	1	0	0	0
Pcordatum_s22_g970	Q9Z321, DNA topoisomerase 3-beta-1 (EC 5.6.2.1) (DNA topoisomerase III beta-1), Q9Z321, DNA topoisomerase	DNA topoisomerase 3-beta-1_chromosome segregation_DNA topological change	DNA-recombination/replication/integration_DNA-Topoisomeras	Nucleus	0	0	0	4.477482206611183E-4	0	0	0	1
Pcordatum_s4632_g48145	O96821, Cell division control protein 2 homolog (EC 2.7.11.22) (EC 2.7.11.23), O96821, [RNA-polymerase]-subunit kinase;cyclin-dependent kinase	Involved in the control of the cell cycle	DNA-recombination/replication/integration	Nucleus	0	0.005484233311953337	0	0.0018128309509651153	0	1	0	1
Pcordatum_s17443_g82798	O94247, DNA polymerase alpha-associated DNA helicase A (EC 3.6.4.12), P30771, Hydrolases acting on acid anhydrides acting on acid anhydrides to facilitate cellular and subcellular movement	DNA polymerase alpha-associated DNA helicase A_DNA duplex unwinding_mitotic DNA replication lagging strand elongation	DNA-recombination/replication/integration	Nucleus	0	0	0	5.376324438939067E-4	0	0	0	1
Pcordatum_s4125_g45180	Q9MAY3, Proliferating cell nuclear antigen (PCNA)	PCNA_auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication	DNA-recombination/replication/integration	Nucleus	0	0.00786755689806322	0	0.0029770004384930726	0	1	0	1
Pcordatum_s14759_g79259	Q9D0F6, Replication factor C subunit 5 (Activator 1 36 kDa subunit) (A1 36 kDa subunit) (Activator 1 subunit 5) (Replication factor C 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36), P09122, DNA-directed DNA polymerase	Replication factor C subunit 5_elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1	DNA-recombination/replication/integration	Nucleus	0	0.0039859693661095505	0	0	0	1	0	0
Pcordatum_s6721_g58095	Q99J62, Replication factor C subunit 4 (Activator 1 subunit 4), P75177, DNA-directed DNA polymerase	Replication factor C subunit 4_DNA-dependent DNA replication_DNA duplex unwinding	DNA-recombination/replication/integration_DNA-polymerase_DNA-directed	Nucleus	0	8.602420381048406E-4	0	0	0	1	0	0
Pcordatum_s728_g15476	P07746, High mobility group-T protein (HMG-T) (HMG-T1) (HMG-1)	DNA-binding protein_single-stranded DNA and unwinds double-stranded DNA	DNA-recombination/replication/integration	Nucleus	0.0427887572540315	0	0	0	1	0	0	0
Pcordatum_s704_g15125	P26586, High mobility group protein homolog TDP-1	DNA-binding protein_single-stranded DNA and unwinds double-stranded DNA	DNA-recombination/replication/integration	Nucleus	0.1283662717620945	0	0	0	1	0	0	0

				Sum	0.27010403016607387	0.02195328255919916	0.008619473741948627	0.008720532975867232	4	6	1	6
					31.336487383394566	2.5174244074245897
	RNA-directed DNA polymerase
Pcordatum_s2063_g30252	A0A813IKA3, Hypothetical protein, P20825, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon 297_DNA integration	Viral protein_DNA-integration	Nucleus	0.038777311261466045	0.02262621441563996	0	0.0074642788800307	1	1	0	1
Pcordatum_s12958_g76026	A0A813JVA5, Hypothetical protein (Fragment), P10978, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon TNT 1-94_DNA integration	Viral protein_DNA-integration	Nucleus	0	0.009146355808142713	0	0	0	1	0	0
Pcordatum_s8264_g63877	A0A812T380, Hypothetical protein, Q9ZT94, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon RE2_DNA integration	Viral protein_DNA-integration	Nucleus	0	0	0	0.04811533817602926	0	0	0	1
Pcordatum_s4035_g44632	A0A813KKV1, Hypothetical protein, Q94HW2, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon RE1_DNA integration	Viral protein_DNA-integration	Nucleus	0	0.005445154470104328	0	0.008040448205012173	0	1	0	1
Pcordatum_s9195_g66831	P16423, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM_DNA integration	Viral protein_DNA-integration	Nucleus	0	0.0035414566028882464	0	0.0029893587656310483	0	1	0	1
Pcordatum_s636_g14135	Q29Q26, Ankyrin repeat domain-containing protein 2B, Q9ZT94, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon RE2_DNA integration	Viral protein_DNA-integration	Nucleus	0.022731527291204236	8.708056508272911E-4	0.018806124527887914	0.0013095154715750752	1	1	1	1
Pcordatum_s2824_g36562	A0A7S2TII6, Hypothetical protein, P16423, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM_DNA integration	Viral protein_DNA-integration	Nucleus	0.006685743320942422	0	0	0	1	0	0	0
Pcordatum_s1811_g27907	A0A813KE51, Hypothetical protein, Q03278, RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2_DNA integration	Viral protein_DNA-integration	Nucleus	0	0	0.007052296697957968	0	0	0	1	0
Pcordatum_s2551_g34443	A0A1D1VPG0, Uncharacterized protein, P15594, RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrotransposable element SLACS 132 kDa protein2_DNA integration	Viral protein_DNA-integration	Nucleus	0	5.325017844976665E-4	0	0	0	1	0	0
Pcordatum_s543_g12640	A0A813HGK6, Hypothetical protein, P08548, RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_LINE-1 reverse transcriptase homolog_DNA integration	Viral protein_DNA-integration	Nucleus	0	2.1431735900867332E-4	0	0	0	1	0	0
Pcordatum_s320_g8654	A0A5F8H4E3, Reverse transcriptase domain-containing protein, P08548, RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_LINE-1 reverse transcriptase homolog_DNA integration	Viral protein_DNA-integration	Nucleus	0	1.1871557633315347E-4	0	0	0	1	0	0

				Sum	0.0681945818736127	0.04249552166744203	0.025858421225845883	0.06791893949827826	3	8	2	5
					2.6372291362262743	0.6256799941424186
	Retrovirus-related Pol polyprotein
Pcordatum_s107_g3736	A0A7S4UA22, Hypothetical protein, Q008X6, RNA helicase;DNA helicase;Hydrolases acting on ester bonds;RNA-directed RNA polymerase;Transferases transferring one-carbon groups methyltransferases;Hydrolases acting on peptide bonds (peptidases) serine endopeptidases	Viral RNA replication_Replicase polyprotein 1ab_methylation_transcription, DNA-templated	Viral protein	Nucleus	0	0	0.007052296697957968	0	0	0	1	0
Pcordatum_s2242_g31841	A0A1Q9BWJ7, Copia protein, P10978, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon TNT 1-94_DNA integration	Viral protein_DNA-integration	Nucleus	0.022731527291204236	0	0	0	1	0	0	0
Pcordatum_s1368_g23370	A0A812QMR8, RE1 protein, Q94HW2, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon TNT 1-94_DNA integration	Viral protein_DNA-integration	Nucleus	0.008022891985130906	0	0	0	1	0	0	0
Pcordatum_s4265_g46006	A0A1Q9CTG4, Reverse transcriptase domain-containing protein, Q82851, DNA-directed DNA polymerase;retroviral ribonuclease H;Transferases transferring phosphorus-containing groups nucleotidyltransferases;Hydrolases acting on ester bonds;Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;exoribonuclease H;RNA-directed DNA polymerase	Gag-Pol polyprotein_Viral DNA-directed DNA polymerase_DNA integration	DNA-recombination/replication/integration	Nucleus	0.002674297328376969	0	0	0	1	0	0	0
Pcordatum_s8589_g64989	A0A2E6D6E1, Reverse transcriptase Ty1/copia-type domain-containing protein, P10978, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral_Retrovirus-related Pol polyprotein Ty1/copia-type domain-containing protein_DNA integration	Viral protein_DNA-integration	Nucleus	0	1.3984280177805448E-4	0	0	0	1	0	0
Pcordatum_s7111_g59680	A0A1Q9BW95, Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment), P04146, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases	Viral_Retrovirus-related Pol polyprotein from transposon TNT 1-94_DNA integration	Viral protein_DNA-integration	Nucleus	0	0	0	9.833159196551437E-4	0	0	0	1
Pcordatum_s7270_g60274	A0A813D6L0, Hypothetical protein, P04146, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases	Aspartyl protease_viral DNA integration_Pol polyprotein	Viral_Pol polyprotein_DNA integration	Nucleus	0	0	0.009403062263943957	0	0	0	1	0
Pcordatum_s4062_g44813	A0A1Q9ETT6, Copia protein, P04146, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases	Aspartyl protease_viral DNA integration_Pol polyprotein	Viral_Pol polyprotein_DNA integration	Nucleus	0	5.93686635400041E-4	0	0.00145287960194092	0	1	0	1
Pcordatum_s820_g16762	P25600, Putative transposon Ty5-1 protein YCL074W, Q94HW2, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	Viral RNA-directed DNA polymerase_Retrovirus-related Pol polyprotein from transposon TNT 1-94_DNA integration	Viral protein_DNA-integration	Nucleus	0.008022891985130906	0	0	0	1	0	0	0
Pcordatum_s19245_g84463	A0A7S0A5X2, Hypothetical protein, O13535, DNA-directed DNA polymerase;Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;ribonuclease H;RNA-directed DNA polymerase	Transposon Ty1-H Gag-Pol polyprotein_Viral DNA-directed DNA polymerase_Transposon Ty1-H Gag-Pol polyprotein_DNA integration	Viral protein_DNA-integration	Nucleus	0	0.008698631184635859	0	0.002997798598798446	0	1	0	1
Pcordatum_s279_g7787	A0A7S3M3V3, Hypothetical protein (Fragment), P12502, DNA-directed DNA polymerase;retroviral ribonuclease H;Transferases transferring phosphorus-containing groups nucleotidyltransferases;Hydrolases acting on ester bonds;exoribonuclease H;HIV-1 retropepsin;RNA-directed DNA polymerase	Gag-Pol polyprotein_Viral DNA-directed DNA polymerase_DNA integration	Viral protein_DNA-integration	Nucleus	0	0.0068999169222386395	0	0	0	1	0	0
Pcordatum_s2396_g33223	O19048, Poly(rC)-binding protein 1 (Alpha-CP1) (Heterogeneous nuclear ribonucleoprotein E1) (hnRNP E1)	Poly(rC)-binding protein 1_Ribonucleoprotein_viral RNA genome replication	Ribonucleoprotein_viral RNA genome replication	Nucleus	0	0.014524786237145659	0	0.005102481994918314	0	1	0	1
Pcordatum_s2734_g35849	Q15366, Poly(rC)-binding protein 2 (Alpha-CP2) (Heterogeneous nuclear ribonucleoprotein E2) (hnRNP E2), Q28K17, polyribonucleotide nucleotidyltransferase	Poly(rC)-binding protein 2_viral RNA genome replication_Single-stranded nucleic acid binding protein	Viral protein_DNA replication	Nucleus	0.07488032519455512	0.12196368786346083	0	0.002643174894461171	1	1	0	1
Pcordatum_s17111_g82438	A0A1Q9ERZ7, LINE-1 retrotransposable element ORF2 protein, P11369, RNA-directed DNA polymerase;Hydrolases acting on ester bonds endodeoxyribonucleases producing 5\'-phosphomonoesters	RNA-directed DNA polymerase_DNA recombination	DNA-recombination/replication/integration_DNA-polymerase_RNA-directed	Nucleus	0	6.331569906924368E-4	0	0	0	1	0	0

				Sum	0.11633193378439813	0.15345370863535152	0.016455358961901926	0.013179651009773995	5	7	2	5
					7.06954701223682	11.643230046193988
	Further proteins related to replication
Pcordatum_s318_g8612	P34730, Protein BMH2	BMH2_DNA damage checkpoint signaling_DNA replication initiation	DNA-recombination/replication/integration_damage-checkpoint signaling	Nucleus	0.07488032519455512	0.10187542309332108	0.02350765565985989	0.04160762395873918	1	1	1	1
Pcordatum_s2433_g33523	P34730, Protein BMH2	BMH2_DNA damage checkpoint signaling_DNA replication initiation	DNA-recombination/replication/integration_damage-checkpoint signaling	Nucleus	0.041451608589843016	0.04864119519124791	0	0.02616725060159772	1	1	0	1

				Sum	0.041451608589843016	0.04864119519124791	0	0.02616725060159772	9	15	4	11
					Nuclei	1.8588576970435702

					relative share				No. of proteins					relative share				No. of proteins
Accession	Protein function	Protein function (translated)	Biological process	Kategory	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG		Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG
													Sum total	1.178027973150055	0.4755356214522492	0.12615775204124807	0.20463942911944605	17	27	7	23
	NER/BER													9.337737507917003	2.323773201960428
Pcordatum_s2841_g36691	Q9DE27, RuvB-like 2 (EC 3.6.4.12) (Reptin), Q9DE27, DNA helicase	DNA helicase_RuvB-like 2_ core component of the chromatin remodeling INO80 complex	DNA-recombination/replication/repair_DNA helicase	Nucleus	0.014708635306073328	0.0011770054147993243	0.006268708175962638	0	1	1	1	0
Pcordatum_s19050_g84322	Q9DE27, RuvB-like 2 (EC 3.6.4.12) (Reptin), Q9DE27, DNA helicase	DNA helicase_RuvB-like 2_ core component of the chromatin remodeling INO80 complex	DNA-recombination/replication/repair_DNA helicase	Nucleus	0	0.030866484861557	0	0.01027383905693486	0	1	0	1
Pcordatum_s11019_g71801	A0A5A8D0A9, RRM domain-containing protein	ATP-dependent DNA helicase RRM3_DNA duplex unwinding_DNA-repair/replication	DNA-recombination/replication/integration	Nucleus	0.013371486641884844	0.062215836303289154	0	0.0010388530361227534	1	1	0	1
Pcordatum_s639_g14175	A0A1Q9ELG4, RRM domain-containing protein	ATP-dependent DNA helicase RRM3_DNA duplex unwinding_DNA-repair/replication	DNA-recombination/replication/integration	Nucleus	0.01872008129863878	0.03983975547647867	0	0.002041716212238817	1	1	0	1
Pcordatum_s87_g3177	A0A7S3M0Y9, Hypothetical protein, Q97VY9, DNA helicase	ATP-dependent DNA helicase Hel308_DNA damage,_DNA repair	DNA-repair/damage	Nucleus	0	0	0	0.003921508196708842	0	0	0	1
Pcordatum_s1974_g29482	A0A813DR07, Hypothetical protein (Fragment), Q8VEG4, exodeoxyribonuclease I	Double-strand break repair_Exonuclease 3'-5' domain-containing protein 2_DNA double-strand break processing	DNA-repair/damage_DNA double-strand break processing	Nucleus	0	0.012416196334557957	0	0	0	1	0	0
Pcordatum_s4077_g44895	A0A516AG34, NAD(P)(+)--arginine ADP-ribosyltransferase (EC 2.4.2.31) (Mono(ADP-ribosyl)transferase) (Fragment), O88554, Transferases glycosyltransferases pentosyltransferases;NAD+ ADP-ribosyltransferase	Double-strand break repair_Base-excision repair_Poly [ADP-ribose] polymerase 2	DNA-repair/damage_base-excision repair	Nucleus	0.017382932634450298	0	0	0	1	0	0	0
Pcordatum_s859_g17303	A0A812S7M1, Fan1 protein, Q5XVJ4, phosphodiesterase I	Homologous chromosome pairing at meiosis_interstrand cross-link repair	DNA-repair/damage	Nucleus	0.05883454122429331	0.07273884763161081	0	0.003333055900242675	1	1	0	1
Pcordatum_s8716_g65340	A0A7S2DKF4, Hypothetical protein (Fragment), A8LK52, DNA ligase (NAD+)	DNA ligase_DNA repair	DNA-recombination/replication/integration_DNA-polymerase_RNA-directed	Nucleus	0.0681945818736127	0.0016923748610244097	0	0	1	1	0	0
Pcordatum_s1190_g21413	A0A812U9D2, Parp1 protein, P27008, Transferases glycosyltransferases pentosyltransferases;NAD+ ADP-ribosyltransferase	Poly [ADP-ribose] polymerase 1 protein_base-excision repair	DNA repair/damage	Nucleus	0	0.0019068879767547755	0	0	0	1	0	0

				Sum	0.19121225897895328	0.2228533888600721	0.006268708175962638	0.020608972402247946	6	8	1	5
					30.502657582970077	10.813415851620245
	RNA helicase
Pcordatum_s9436_g67583	A0A7S1WQ66, Hypothetical protein, Q9VNV3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.23801246222555023	0.026466743787780835	0.014888181917911265	0.01473971649294087	1	1	1	1
Pcordatum_s2971_g37619	A0A7S0FSP9, Hypothetical protein, Q9VNV3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.14307490706816783	0.013649463681221535	0	0.029981000214115677	1	1	0	1
Pcordatum_s1870_g28486	A0A7S1F1H0, Hypothetical protein (Fragment), Q90WU3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.10162329847832481	0.023408081262578234	0	0.013141573798171442	1	1	0	1
Pcordatum_s2303_g32387	A0A7S2KVR9, Hypothetical protein (Fragment), A2VD92, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.04680020324659696	0.004122201543909718	0	0.003220097775975446	1	1	0	1
Pcordatum_s5494_g52573	A0A7S4UZF8, Hypothetical protein (Fragment), A2VD92, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.01872008129863878	0.02035761151869091	0	0.015977207031110597	1	1	0	1
Pcordatum_s4160_g45392	A0A7S1F1H0, Hypothetical protein (Fragment), Q90WU3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.017382932634450298	2.468709768012627E-4	0.0023507655659859893	0.0030127416248439376	1	1	1	1
Pcordatum_s1957_g29298	A0A813JMV3, Hypothetical protein, Q9VNV3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0.013371486641884844	0.0030727642594134256	0	0.0037927253852527427	1	1	0	1
Pcordatum_s3047_g38169	A0A7S0FV17, Hypothetical protein (Fragment), Q9VNV3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0	0.005236202295319822	0	0.0053241783268690715	0	1	0	1
Pcordatum_s363_g9492	A0A7S1F1H0, Hypothetical protein (Fragment), Q90WU3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0	0.002371048914634859	0	0.006785595724326654	0	1	0	1
Pcordatum_s3047_g38170	A0A7S2QHJ2, Hypothetical protein (Fragment), Q9VNV3, RNA helicase	Exonuclease_RNA helicase Ddx1_DEAD-box ATP-dependent_DNA duplex unwinding_double-strand break repair	RNA helicase_DNA duplex unwinding_double strand break repair	Nucleus	0	0	0	0.0023323705025064126	0	0	0	1

				Sum	0.5789853715936137	0.09893098824035058	0.017238947483897253	0.09830720687611286	7	9	2	10
					33.58588870546991	1.0063452251778837

	Double-strand break repair
Pcordatum_s7354_g60595	Q6XJU9, Osteoclast-stimulating factor 1 (Osteoclast-stimulating factor-like), Q9TXQ1, NAD+ ADP-ribosyltransferase;Transferases glycosyltransferases pentosyltransferases	Double-strand break repair_cellular response to DNA damage stimulus	DNA-repair/damage	Nucleus	0	0	0.004701531131971979	0	0	0	1	0
Pcordatum_s1963_g29363	Q6GL04, vesicle-fusing ATPase	Double-strand break repair_Transitional endoplasmic reticulum ATPase	DNA-repair/damage_Autophagy	Nucleus	0	8.839503521765037E-4	0	0.003225824805624752	0	1	0	1
Pcordatum_s12793_g75715	P53041, Serine/threonine-protein phosphatase 5 (PP5) (EC 3.1.3.16) (Protein phosphatase T) (PP-T) (PPT), P53041, protein-serine/threonine phosphatase	Double-strand break repair_Serine/threonine-protein phosphatase 5	DNA-repair/damage_DNA double-strand break processing	Nucleus	0.36370443665926777	0.10655835889114591	0.08854550298547226	0.06729561260547394	1	1	1	1
Pcordatum_s2381_g33121	O74859, Aprataxin-like protein (EC 3.6.1.71) (EC 3.6.1.72) (Hit family protein 3), P61802, DNA-3\'-diphospho-5\'-guanosine diphosphatase;adenosine-5\'-diphospho-5\'-[DNA] diphosphatase	Double-strand break repair_mismatch repair	DNA-repair/damage_DNA double-strand break processing	Nucleus	0.01203433797769636	0.005831810246692032	0	0.0014280273074890645	1	1	0	1

				Sum	0.37573877463696415	0.11327411949001445	0.09324703411744424	0.07194946471858775	2	3	2	3
					4.02949839845547	1.5743566673227898

	Further proteins involved in DNA repair
Pcordatum_s1820_g28008	Q08E38, RING-type E3 ubiquitin transferase	Pre-mRNA-processing factor 19_DNA damage checkpoint signaling/PRP19C/Prp19 complex	DNA-repair/damage_Ubiquitin conjugation pathway	Nucleus	0	0.005393242687611021	0	0	0	1	0	0
Pcordatum_s2100_g30583	A0A7S3X8A6, Hypothetical protein (Fragment), Q5ZMA2, RING-type E3 ubiquitin transferase	Pre-mRNA-processing factor 19_DNA damage checkpoint signaling/PRP19C/Prp19 complex	DNA-repair/damage_Ubiquitin conjugation pathway	Nucleus	0	0.003752221339910646	0	0	0	1	0	0
Pcordatum_s1542_g25226	A0A812KZ61, POC1B protein, Q5ZMA2, RING-type E3 ubiquitin transferase	Pre-mRNA-processing factor 19_DNA repair, PRP19C/Prp19 complex	DNA-repair/damage_Ubiquitin conjugation pathway	Nucleus	0.004011445992565453	0	0	0	1	0	0	0
Pcordatum_s3608_g41991	Q96FW1, Ubiquitin thioesterase OTUB1 (EC 3.4.19.12) (Deubiquitinating enzyme OTUB1) (OTU domain-containing ubiquitin aldehyde-binding protein 1) (Otubain-1) (hOTU1) (Ubiquitin-specific-processing protease OTUB1), Q96FW1, ubiquitinyl hydrolase 1	Ubiquitin thioesterase OTUB1_non-catalytic role in DNA repair _cellular response to DNA damage stimulus_DNA repair	DNA_repair_Ubiquitin_Ubl conjugation pathway	Nucleus	0	0	0	0.0024074548754349423	0	0	0	1
Pcordatum_s3474_g41099	Q99NB8, Ubiquilin-4 (Ataxin-1 interacting ubiquitin-like protein) (A1Up) (Ataxin-1 ubiquitin-like-interacting protein A1U) (Connexin43-interacting protein of 75 kDa) (CIP75), Q9JK66, RBR-type E3 ubiquitin transferase	Ubiquilin_Regulator of protein degradation_DNA repair	DNA_repair_Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.003980386674416835	0	0	0	1	0	0
Pcordatum_s7698_g61890	O74803, UV excision repair protein rhp23 (RAD23 homolog)	Repair protein rhp23_nucleotide-excision repair	DNA-repair/damage	Nucleus	0	0.0011921584351081242	0	0	0	1	0	0
Pcordatum_s5695_g53602	Q28811, Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA photolyase) (Photoreactivating enzyme), Q28811, deoxyribodipyrimidine photo-lyase	Deoxyribodipyrimidine photo-lyase_protein-chromophore linkage	DNA-repair/damage	Nucleus	0.028080121947958173	0	0	0	1	0	0	0
Pcordatum_s617_g13856	Q10301, UPF0652 protein C22H10.08, Q8K1E6, mRNA N1-methyladenine demethylase	DNA-dealkylation_oxidative single-stranded DNA demethylation	DNA-repair/damage	Nucleus	0	0	0.007835885219953298	0	0	0	1	0
Pcordatum_s6331_g56483	A0A7S1WQN9, Sugar phosphate phosphatase (EC 3.1.3.-) (Fragment), O94725, Hydrolases acting on ester bonds phosphoric-monoester hydrolases	Damage-control phosphatase_regulation of response to DNA damage stimulus	DNA-repair/damage_regulation of response to DNA damage stimulus	Nucleus	0	0.016164865052482328	0.0015671770439906595	0.004025370893625133	0	1	1	1
Pcordatum_s4874_g49461	A0A7S2N0P4, Hypothetical protein (Fragment), Q54VI1, non-specific serine/threonine protein kinase	DNA damage checkpoint signaling_Kinase, Serine/threonine-protein kinase, Transferase	DNA-repair/damage_regulation of response to DNA damage stimulus	Nucleus	0	0.008877277318802763	0	0	0	1	0	0
Pcordatum_s5221_g51203	Q54MH0, non-specific serine/threonine protein kinase	DNA damage checkpoint signaling_Kinase, Serine/threonine-protein kinase, Transferase	DNA-repair/damage_regulation of response to DNA damage stimulus	Nucleus	0	0.0011169733534802505	0	0.004638215815058145	0	1	0	1
Pcordatum_s11304_g72503	Q90WU3, ATP-dependent RNA helicase DDX1 (EC 3.6.4.13) (DEAD box protein 1), Q90WU3, RNA helicase	RNA helicase DDX1_ATP-dependent_DNA duplex unwinding_DNA repair_double-strand break repair	DNA repair/damage	Nucleus	0	0	0	0.0017363374273202433	0	0	0	1
Pcordatum_s8954_g66098	A0A7S1WBK9, Hypothetical protein (Fragment), Q9EPU0, Hydrolases acting on acid anhydrides acting on acid anhydrides to facilitate cellular and subcellular movement	RNA-helicase_Regulator of nonsense transcripts 1_Nonsense-mediated mRNA decay_DNA repair	DNA repair/damage	Nucleus	0	0	0	9.664061110590356E-4	0	0	0	1

				Sum	0.032091567940523626	0.04047712486181197	0.009403062263943957	0.013773785122497498	2	7	2	5
					3.4128847645281204	2.9387074432937395

					relative share				No. of proteins					relative share				No. of proteins
Accession	Protein function	Protein function (translated)	Biological process	Kategory	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG		Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG
													Sum total	2.023105928917177	5.643465788014051	0.12302339795326676	1.031441604162368	42	107	11	89
	RNA helicases													16.444887416340915	5.471435091661927
Pcordatum_s5196_g51086	A0A7S1Q388, Hypothetical protein (Fragment), Q8H136, RNA helicase	RNA helicase 14_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosomebiogenesis_rRNA-processing	Nucleus	0	0	0	0.01600885640548834	0	0	0	1
Pcordatum_s2064_g30255	A0A7S3HIK2, Hypothetical protein (Fragment), Q5N7W4, RNA helicase	RNA helicase 30_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosomebiogenesis_rRNA-processing	Nucleus	0	0	0	0.0061531658686060815	0	0	0	1
Pcordatum_s6523_g57287	A0A7S1Q5B2, Hypothetical protein (Fragment), Q8W4R3, RNA helicase	RNA helicase 30_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosome biogenesis/Nonsense-mediated mRNA decay/rRNA processing	Nucleus	0	0	0	5.898237693558694E-4	0	0	0	1
Pcordatum_s9712_g68359	A0A7S2Q7H8, Hypothetical protein (Fragment), Q9LYJ9, RNA helicase	RNA helicase 46_DEAD-box ATP-dependent	RNA helicase	Nucleus	0.004011445992565453	0	0	0	1	0	0	0
Pcordatum_s6750_g58210	Q9LYJ9, RNA helicase	RNA helicase 46_DEAD-box ATP-dependent	RNA helicase	Nucleus	0	0	0	0.021822168277800095	0	0	0	1
Pcordatum_s7447_g60947	A0A7S2AJ90, Hypothetical protein (Fragment), Q6FLF3, RNA helicase	RNA helicase DBP2_DEAD-box ATP-dependent	RNA helicase_Ribosome biogenesis/Nonsense-mediated mRNA decay/rRNA processing	Nucleus	0	0.006050187745113588	0	0.0039754628444575646	0	1	0	1
Pcordatum_s132_g4421	B7P8J4, RNA helicase (EC 3.6.4.13) (Fragment), Q59LU0, RNA helicase	RNA helicase DBP2_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosomebiogenesis_rRNA-processing	Nucleus	0	0.006037050294013328	0	0.013867248739261106	0	1	0	1
Pcordatum_s5792_g54056	Q59LU0, RNA helicase	RNA helicase DBP2_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosomebiogenesis_rRNA-processing	Nucleus	0	0.001881874617871828	0	0	0	1	0	0
Pcordatum_s883_g17604	A0A813L2F3, Hypothetical protein, P24782, RNA helicase	RNA helicase dbp2_DEAD-box ATP-dependent_Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosome biogenesis/Nonsense-mediated mRNA decay/rRNA processing	Nucleus	0	0	0	0.0013325441592175467	0	0	0	1
Pcordatum_s1374_g23442	A0A7S2EZA5, Hypothetical protein (Fragment), Q5ZI74, RNA helicase	RNA helicase DHX30_DEAD-box ATP-dependent _Nonsense-mediated mRNA decay, Ribosome biogenesis, rRNA processing	RNA helicase_Ribosome biogenesis_RNA helicase	Nucleus	0	3.3943490516607095E-4	0	0	0	1	0	0
Pcordatum_s3864_g43540	Q8LA13, DEAD-box ATP-dependent RNA helicase 11 (EC 3.6.4.13), Q2R1M8, RNA helicase	RNA helicase 11_DEAD-box ATP-dependent	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0.05883454122429331	0.07252424026264408	0.04623172279772446	0.09536936123506425	1	1	1	1
Pcordatum_s3357_g40313	Q5QMN3, DEAD-box ATP-dependent RNA helicase 20 (EC 3.6.4.13), P46942, RNA helicase	RNA helicase 20_DEAD-box ATP-dependent_ involved nonsense-mediated mRNA decay and ribosome biogenesis	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0.017382932634450298	0.0018744358624475084	0	0.014279896296624241	1	1	0	1
Pcordatum_s12862_g75843	Q5QMN3, DEAD-box ATP-dependent RNA helicase 20 (EC 3.6.4.13), Q59LU0, RNA helicase	RNA helicase 20_DEAD-box ATP-dependent_ involved nonsense-mediated mRNA decay and ribosome biogenesis	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0.0013371486641884844	0	0	0	1	0	0	0
Pcordatum_s366_g9544	Q9C718, DEAD-box ATP-dependent RNA helicase 20 (EC 3.6.4.13), P46942, RNA helicase	RNA helicase 20_DEAD-box ATP-dependent_ involved nonsense-mediated mRNA decay and ribosome biogenesis	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0	0.010099930301001227	0	0.0059818824686998714	0	1	0	1
Pcordatum_s1507_g24826	Q5QMN3, DEAD-box ATP-dependent RNA helicase 20 (EC 3.6.4.13), A6ZRX0, RNA helicase	RNA helicase 20_DEAD-box ATP-dependent_ involved nonsense-mediated mRNA decay and ribosome biogenesis	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0	0	0	0.0033559640188398974	0	0	0	1
Pcordatum_s9111_g66579	Q0JM17, DEAD-box ATP-dependent RNA helicase 56 (EC 3.6.4.13) (API5-interacting protein 1), Q0JM17, RNA helicase	RNA helicase 56_DEAD-box ATP-dependent_pre-mRNA splicing_export of mRNA out of the nucleus	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0.24737250287486962	0.12947204567771597	0.016455358961901926	0.05382352891201494	1	1	1	1
Pcordatum_s4666_g48336	Q0JM17, DEAD-box ATP-dependent RNA helicase 56 (EC 3.6.4.13) (API5-interacting protein 1), Q0JM17, RNA helicase	RNA helicase 56_DEAD-box ATP-dependent_pre-mRNA splicing_export of mRNA out of the nucleus	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0.23400101623298478	0.5345536049509633	0	0.1357539629410635	1	1	0	1
Pcordatum_s25_g1103	Q6FLF3, ATP-dependent RNA helicase DBP2 (EC 3.6.4.13), Q6FLF3, RNA helicase	RNA helicase dbp2_ATP-dependent_nonsense-mediated mRNA decay and ribosome biogenesis	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0	8.640121675596616E-4	0	0.006832723149888178	0	1	0	1
Pcordatum_s4897_g49588	Q5B0J9, ATP-dependent RNA helicase dbp2 (EC 3.6.4.13), Q9LYJ9, RNA helicase	RNA helicase dbp2_DEAD-box ATP-dependent_ involved nonsense-mediated mRNA decay and ribosome biogenesis	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0	0.003984649820800363	0	0.003974671610098121	0	1	0	1
Pcordatum_s3837_g43382	A6SFW7, ATP-dependent RNA helicase dbp2 (EC 3.6.4.13), A6SFW7, RNA helicase	RNA helicase dbp2_DEAD-box ATP-dependent_ involved nonsense-mediated mRNA decay and ribosome biogenesis	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0	4.5153100420643286E-4	0	0	0	1	0	0
Pcordatum_s6381_g56691	Q2U070, ATP-dependent RNA helicase dbp2 (EC 3.6.4.13), Q9LYJ9, RNA helicase	RNA helicase dbp2_DEAD-box ATP-dependent_ involved nonsense-mediated mRNA decay and ribosome biogenesis	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0	0	0	5.17030208287062E-4	0	0	0	1
Pcordatum_s5075_g50499	Q501J6, RNA helicase	RNA helicase DDX17_mRNA splicing_ Antiviral defense_Immunity	mRNA splicing_RNA helicase	Nucleus	0	0.03709872635784473	0	0	0	1	0	0
Pcordatum_s2645_g35195	A0A5P1FLC0, Q_MOTIF domain-containing protein, Q8VDW0, RNA helicase	RNA helicase DDX39A_ATP-dependent _pre-mRNA splicing _ export of mRNA out of the nucleus	mRNA splicing_RNA helicase_nuclear export	Nucleus	0	0.004983386114378265	0	0	0	1	0	0
Pcordatum_s1382_g23515	Q54E49, RNA helicase	RNA helicase ddx6_ATP-dependent (probable)_mRNA turnover	mRNA-processing/splicing_RNA helicase	Nucleus	0	0.030517747886986052	0	0.05255906104997085	0	1	0	1
Pcordatum_s2404_g33297	O48534, RNA helicase	RNA helicase DExH13_DExH-box ATP-dependent__component of the U5 snRNP and U4/U6-U5 tri-snRNP complexes	mRNA-processing/splicing_RNA helicase	Nucleus	0	0	0	7.732997139628387E-4	0	0	0	1
Pcordatum_s2539_g34346	P0CQ72, ATP-dependent RNA helicase FAL1 (EC 3.6.4.13), Q9VHS8, RNA helicase	RNA helicase FAL1_ATP-dependent_Nucleolus_ involved in 40S ribosomal subunit biogenesis	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0.07086887920198967	0.002072701170277386	0	0	1	1	0	0
Pcordatum_s751_g15780	A0A7S3UPY2, Hypothetical protein (Fragment), P0CQ96, RNA helicase	RNA helicase SUB2_ATP-dependent_pre-mRNA splicing _ export of mRNA out of the nucleus	mRNA splicing_RNA helicase_nuclear export	Nucleus	0	0.011991114238526885	0	0.0037640148813529333	0	1	0	1
Pcordatum_s3046_g38159	A0A815VGS4, Hypothetical protein, Q27268, RNA helicase	RNA helicase WM6_ATP-dependent _pre-mRNA splicing _ export of mRNA out of the nucleus_chromatin remodeling	mRNA splicing_RNA helicase_nuclear export_chromatin remoddeling	Nucleus	0	0	0.0023507655659859893	0	0	0	1	0
Pcordatum_s1719_g26988	P46942, ATP-dependent RNA helicase-like protein DB10 (EC 3.6.4.13), Q8H136, RNA helicase	RNA helicase-like protein DB10_ATP-dependent	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0.04011445992565453	0.02584945759204341	0	0.015171805808850332	1	1	0	1
Pcordatum_s3594_g41890	P46942, ATP-dependent RNA helicase-like protein DB10 (EC 3.6.4.13), Q9LYJ9, RNA helicase	RNA helicase-like protein DB10_ATP-dependent	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0.017382932634450298	0.002790577319969022	0	0.00710844948524094	1	1	0	1
Pcordatum_s12991_g76082	P46942, ATP-dependent RNA helicase-like protein DB10 (EC 3.6.4.13), P46942, RNA helicase	RNA helicase-like protein DB10_ATP-dependent	mRNA-processing/splicing_RNA helicase_Ribosome biogenesis_rRNA processing	Nucleus	0	4.547356142430308E-4	0	0	0	1	0	0
Pcordatum_s1190_g21418	O22899, Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP43), O22899, RNA helicase	Splicing factor_ ATP-dependent RNA helicase DEAH3	mRNA-processing/splicing_RNA helicase	Nucleus	0	0	0	0.0010581591544931764	0	0	0	1
Pcordatum_s990_g18983	A0A7S1MGG3, Hypothetical protein (Fragment), Q9HEH1, Hydrolases acting on acid anhydrides acting on acid anhydrides to facilitate cellular and subcellular movement	RNA-helicase_RNA-dependent_Regulator of nonsense transcripts_DNA duplex unwinding	mRNA-processing/Helicase	Nucleus	0	0	0	0.022249585543206173	0	0	0	1
Pcordatum_s4074_g44882	A0A7S1M554, Hypothetical protein (Fragment), Q91372, RNA helicase	RNA helicase	mRNA-processing/Helicase	Nucleus	0	0.006472224736584998	0	0.0037233981842348307	0	1	0	1
Pcordatum_s523_g12334	A0A7S4T4E2, Hypothetical protein, O22243, RNA helicase;DNA helicase	RNA helicase/DNA helicase	mRNA-processing/Helicase	Nucleus	0	0.0029876100854771314	0	0	0	1	0	0
Pcordatum_s1518_g24951	A0A813J244, Hypothetical protein (Fragment), Q2R1M8, RNA helicase	RNA helicase	mRNA-processing/Helicase	Nucleus	0	0.03376317682518133	0.018806124527887914	0.03594464661472171	0	1	1	1
Pcordatum_s3327_g40105	A0A812UU05, PL10A protein, Q75HJ0, RNA helicase	RNA helicase	mRNA-processing/Helicase	Nucleus	0	0.0010512135954894297	0	0.011962559246947257	0	1	0	1
Pcordatum_s5624_g53257	A0A7S2K240, Hypothetical protein (Fragment), Q9NXZ2, RNA helicase	RNA helicase	mRNA-processing/Helicase	Nucleus	0	2.588266373224164E-4	0	0	0	1	0	0
Pcordatum_s3503_g41315	A0A7S2VJN2, Hypothetical protein (Fragment), Q75HJ0, RNA helicase	RNA helicase	mRNA-processing/Helicase	Nucleus	0	0	0	0.00653839903930583	0	0	0	1
Pcordatum_s881_g17576	A0A7S2PTC1, Hypothetical protein (Fragment), P46942, RNA helicase	RNA helicase	mRNA-processing/Helicase	Nucleus	0	0	0	0.003226503006504275	0	0	0	1
Pcordatum_s3605_g41967	A0A7S3XAC1, Hypothetical protein (Fragment), F4ILR7, RNA helicase	RNA helicase	mRNA-processing/Helicase	Nucleus	0	0	0	0.0028412849069351822	0	0	0	1
Pcordatum_s182_g5635	A0A813JFN6, Hypothetical protein, P46942, RNA helicase	RNA helicase	mRNA-processing/Helicase	Nucleus	0	0	0	0.001745387641279212	0	0	0	1
Pcordatum_s811_g16636	A0A7S1WP37, Hypothetical protein (Fragment), Q0JL73, RNA helicase	RNA helicase	mRNA-processing/Helicase	Nucleus	0	0	0	8.328306800543067E-4	0	0	0	1
Pcordatum_s7447_g60946	Q26696, RNA helicase	RNA helicase_nucleobase-containing compound metabolic process	mRNA-processing/Helicase	Nucleus	0.02406867595539272	0.018578182918504892	0	0.015863193927697444	1	1	0	1
Pcordatum_s5045_g50334	A0A7S4T642, Hypothetical protein (Fragment), Q8H136, RNA helicase	RNA helicase_Ribosome biogenesis/Nonsense-mediated mRNA decay/rRNA processing	mRNA-processing/Helicase	Nucleus	0.03342871660471211	0.048295938336173724	0	0.005746848186118493	1	1	0	1
Pcordatum_s6755_g58232	A0A813M1P5, Hypothetical protein, Q5ZKD7, RNA helicase	RNA helicase_RNA-mediated gene silencing	mRNA-processing/Helicase	Nucleus	0	0	0	4.788474987699142E-4	0	0	0	1


				Sum	0.7488032519455514	0.9952986170385061	0.08384397185350029	0.5752265654744123	11	27	4	34
	mRNA splicing via sRNPs - spliceosome				8.930913402503494	1.730272342720548

Pcordatum_s14_g652	Q0DKM4, U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)	U1 small nuclear ribonucleoprotein A	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0	0.0029202915239617214	0	0.0021899106399799317	0	1	0	1
Pcordatum_s38_g1606	P09012, U1 small nuclear ribonucleoprotein A (U1 snRNP A) (U1-A) (U1A)	U1 small nuclear ribonucleoprotein A	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0.034765865268900596	0.0026066820055611743	0	0	1	1	0	0
Pcordatum_s9146_g66685	A0A2J8QG60, U1 small nuclear ribonucleoprotein A (Fragment)	U1 small nuclear ribonucleoprotein A	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0	0.016456760075272896	0	0.00300314885018135	0	1	0	1
Pcordatum_s147_g4829	Q9V4Q8, Probable U2 small nuclear ribonucleoprotein A' (U2 snRNP A'), B3Y618, ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase	U2 small nuclear ribonucleoprotein A (Probable)_chromatin organization	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0.06418313588104725	0.10679080187253354	0	0.017649951822627564	1	1	0	1
Pcordatum_s5742_g53812	Q8CCF0, U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA-processing factor 31) (U4/U6 snRNP 61 kDa protein) (Protein 61K)	U4/U6 small nuclear ribonucleoprotein	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0.05482309523172786	0.005566509137055855	0	0.0016366042202037147	1	1	0	1
Pcordatum_s41_g1713	Q2KIA6, U4/U6 small nuclear ribonucleoprotein Prp3 (Pre-mRNA-splicing factor 3)	U4/U6 small nuclear ribonucleoprotein	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0.03744016259727756	0	0	0	1	0	0	0
Pcordatum_s9380_g67422	O43395, U4/U6 small nuclear ribonucleoprotein Prp3 (Pre-mRNA-splicing factor 3) (hPrp3) (U4/U6 snRNP 90 kDa protein)	U4/U6 small nuclear ribonucleoprotein	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0	0.008903958234944572	0	0.002500375931494929	0	1	0	1
Pcordatum_s1556_g25364	Q96DI7, U5 small nuclear ribonucleoprotein 40 kDa protein (U5 snRNP 40 kDa protein) (U5-40K) (38 kDa-splicing factor) (Prp8-binding protein) (hPRP8BP) (U5 snRNP-specific 40 kDa protein) (WD repeat-containing protein 57), P49695, non-specific serine/threonine protein kinase	U5 small nuclear ribonucleoprotein 40 kDa protein	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0	0.037399249176887674	0	0.0033832427653273803	0	1	0	1
Pcordatum_s1220_g21753	Q96DI7, U5 small nuclear ribonucleoprotein 40 kDa protein (U5 snRNP 40 kDa protein) (U5-40K) (38 kDa-splicing factor) (Prp8-binding protein) (hPRP8BP) (U5 snRNP-specific 40 kDa protein) (WD repeat-containing protein 57), P49695, non-specific serine/threonine protein kinase	U5 small nuclear ribonucleoprotein 40 kDa protein	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0	0	0	0.009810778567527175	0	0	0	1
Pcordatum_s9454_g67642	O75643, U5 small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.4.13) (Activating signal cointegrator 1 complex subunit 3-like 1) (BRR2 homolog) (U5 snRNP-specific 200 kDa protein) (U5-200KD), O75643, RNA helicase	U5 SNRNP_U5 small nuclear ribonucleoprotein 200 kDa helicase	mRNA-processing/splicing_RNA helicase	Nucleus	0.022731527291204236	0.005021551424859376	0	0.001220286842525826	1	1	0	1
Pcordatum_s2_g90	Q05856, Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)	Small nuclear ribonucleoprotein B_Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs)	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0	0.04568563120613676	0	0.010243772151276006	0	1	0	1
Pcordatum_s3282_g39791	Q10163, Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)	Small nuclear ribonucleoprotein B_Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs)	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0	0.007678093392460559	0	0.004704001300371882	0	1	0	1
Pcordatum_s10902_g71504	A0A812Z5V8, Snrpb protein	Small nuclear ribonucleoprotein B_Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs)	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0.014708635306073328	0	0	0	1	0	0	0
Pcordatum_s11146_g72120	Q9SSF1, Small nuclear ribonucleoprotein SmD1a (AtSmD1-a)	Small nuclear ribonucleoprotein D1a _splicing regulation_post-transcriptional gene silencing (PTGS)	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0	0.005049798394774728	0	0	0	1	0	0
Pcordatum_s3859_g43510	Q9SY09, Small nuclear ribonucleoprotein SmD1b (AtSmD1-b), P74297, non-specific serine/threonine protein kinase	Small nuclear ribonucleoprotein D1b _splicing regulation_post-transcriptional gene silencing (PTGS)	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0.01872008129863878	0.0019364762427261692	0.014104593395915936	9.680413287352188E-4	1	1	1	1
Pcordatum_s1151_g20934	O14036, Small nuclear ribonucleoprotein Sm D2 (Sm-D2) (Complexed with cdc5 protein 9) (snRNP core protein D2)	Small nuclear ribonucleoprotein D2_Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs)	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0.014708635306073328	0.015765303832760813	0.0023507655659859893	0.01080042436205787	1	1	1	1
Pcordatum_s982_g18878	Q9VLV5, Probable small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E) (Sm-E) (SmE)	Small nuclear ribonucleoprotein E_Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs)	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0.01872008129863878	0.029074078315747657	0	0.00936067925048371	1	1	0	1
Pcordatum_s4060_g44800	Q9SUM2, Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF)	Small nuclear ribonucleoprotein F_Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs)	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0	0.04467567152718181	0	0	0	1	0	0
Pcordatum_s1648_g26274	Q60HC3, Heterogeneous nuclear ribonucleoprotein F (hnRNP F) [Cleaved into: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed]	Small nuclear ribonucleoprotein F_Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs)	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0.01203433797769636	0.014175345988426407	0	0.006619843429371222	1	1	0	1
Pcordatum_s5388_g52057	Q8VYI0, Sm-like protein LSM8 (AtLSM8) (U6 snRNA-associated Sm-like protein LSM8)	Small nuclear ribonucleoprotein_Sm-like protein LSM8_Component of the nuclear LSM2-LSM8 complex	Ribonucleoprotein_mRNA-processing/splicing	Nucleus	0	0.031653354380271864	0	0.0024771663902845844	0	1	0	1
Pcordatum_s5903_g54577	A0A7S2LCZ4, Branchpoint-bridging protein (Fragment)	BBP_Branchpoint-bridging protein_pre-mRNA branch point binding	mRNA-processing_splicing	Nucleus	0.00936004064931939	0.01320922856488166	0	0.005295091044702861	1	1	0	1
Pcordatum_s5628_g53275	P49030, Protein mago nashi homolog 2 (OsMAGO2) (Mago nashi-like protein 2)	EJC_Core component of the splicing-dependent multiprotein exon junction complex (EJC)_RNA-binding	mRNA-processing/splicing	Nucleus	0.004011445992565453	0.00494901993434778	0	0	1	1	0	0
Pcordatum_s11150_g72134	P49030, Protein mago nashi homolog 2 (OsMAGO2) (Mago nashi-like protein 2)	EJC_Core component of the splicing-dependent multiprotein exon junction complex (EJC)_RNA-binding	mRNA-processing/splicing	Nucleus	0	0.09651241394383814	0	0.018463416099788823	0	1	0	1
Pcordatum_s132_g4440	A0A812WJJ5, Eif4a3 protein, Q7ZVA6, RNA helicase	RNA-helicase_Core component of exon junction complex (EJC)_Eukaryotic initiation factor 4A-III	mRNA-processing/splicing_RNA helicase	Nucleus	0	0.7115865587261418	0	0.015472022731519205	0	1	0	1
Pcordatum_s3436_g40856	Q9VHS8, Eukaryotic initiation factor 4A-III (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13), Q9VHS8, RNA helicase	RNA-helicase_Core component of exon junction complex (EJC)_Eukaryotic initiation factor 4A-III	mRNA-processing/splicing_RNA helicase_chromatin organization	Nucleus	0.2647554355093199	1.1941377530719053	0	0.04179601309194003	1	1	0	1
Pcordatum_s132_g4441	A0A7S2BEF9, Hypothetical protein (Fragment), Q91VC3, RNA helicase	RNA-helicase_Core component of exon junction complex (EJC)_Eukaryotic initiation factor 4A-III	mRNA-processing/splicing_RNA helicase_mRNA-transport	Nucleus	0.22998957024041933	0.141424806099289	0.009403062263943957	0.012657790504111666	1	1	1	1
Pcordatum_s16819_g82098	Q29350, Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) (Fragment)	Splicing factor U2AF 35 kDa subunit	mRNA-processing_splicing	Nucleus	0	0.01762245510170776	0	0	0	1	0	0
Pcordatum_s953_g18547	Q9FMY5, Splicing factor U2af small subunit B (U2 auxiliary factor 35 kDa subunit B) (U2 small nuclear ribonucleoprotein auxiliary factor small subunit B) (U2 snRNP auxiliary factor small subunit B) (Zinc finger CCCH domain-containing protein 60) (AtC3H60)	Splicing factor U2af small subunit B_DNA/RNA-binding	Ribonucleoprotein_mRNA-processing/splicing_DNA/RNA-binding	Nucleus	0.04011445992565453	0.09951234945253297	0	0.011634460732564661	1	1	0	1
Pcordatum_s15407_g80221	Q91YR7, Pre-mRNA-processing factor 6 (PRP6 homolog) (U5 snRNP-associated 102 kDa protein) (U5-102 kDa protein)	Processing factor 6_Pre-mRNA_component of the U4/U6-U5 tri-snRNP complex	mRNA-processing_splicing	Nucleus	0.006685743320942422	0	0	0	1	0	0	0
Pcordatum_s20814_g85426	A1A5S1, Pre-mRNA-processing factor 6 (PRP6 homolog) (U5 snRNP-associated 102 kDa protein) (U5-102 kDa protein)	Processing factor 6_Pre-mRNA_component of the U4/U6-U5 tri-snRNP complex	mRNA-processing_splicing	Nucleus	0	5.341838422544327E-4	0	4.385322242649329E-4	0	1	0	1
Pcordatum_s13888_g77794	A0A7S4R455, Hypothetical protein, Q5R723, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing	Nucleus	0	0.05843410645014558	0	0	0	1	0	0
Pcordatum_s840_g17006	A0A812KQV6, Rsp-4 protein, A4FV72, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing	Nucleus	0	0.021995080244405014	0	0	0	1	0	0
Pcordatum_s19272_g84479	A0A812KQV6, Rsp-4 protein, Q9V3G3, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing	Nucleus	0	0.015271126864221194	0	0	0	1	0	0
Pcordatum_s180_g5572	A0A0R4IEW8, ELAV-like protein 4 (Protein elrD), P0C1I6, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing	Nucleus	0	0.0028654288901451236	0	0	0	1	0	0
Pcordatum_s11988_g74037	Q9WX37, Putative RNA-binding protein RbpE, Q9V3G3, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing	Nucleus	0	0.0022909336637199117	0	0.0012666531759892184	0	1	0	1
Pcordatum_s2873_g36894	A0A7S1RNQ1, Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) (Fragment), Q9V3G3, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing	Nucleus	0	0.002179932352271238	0	0.0024205742946710493	0	1	0	1
Pcordatum_s173_g5411	O42847, Uncharacterized RNA-binding protein C23A1.09, Q5R723, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing	Nucleus	0.020057229962827265	0.7528078491403439	0	0.02970354069873747	1	1	0	1
Pcordatum_s12186_g74474	Q9WX37, Putative RNA-binding protein RbpE, P0C196, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing_mRNA-transport	Nucleus	0.010697189313507875	0.0037697741926224185	0	0	1	1	0	0
Pcordatum_s1946_g29197	Q9V535, RNA-binding protein 8A (Protein tsunagi), Q5R723, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing_mRNA-transport	Nucleus	0	0.09191329102389356	0	0	0	1	0	0
Pcordatum_s20425_g85235	A0A7S1RP90, Hypothetical protein (Fragment), Q9V3G3, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing_posttranscriptional base modification	Nucleus	0.01872008129863878	0.0830429014415948	0	0.003786922999950156	1	1	0	1
Pcordatum_s19209_g84433	A0A7S2B7N3, Hypothetical protein (Fragment), Q9V3G3, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing_posttranscriptional base modification	Nucleus	0.010697189313507875	0.06541740123532738	0	0.00855791547608826	1	1	0	1
Pcordatum_s6059_g55288	A0A1G0FXV9, RRM domain-containing protein, Q32LC7;Q9V3G3, RNA helicase;DNA helicase;peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding	mRNA-processing/splicing_RNA/DNA-helicase	Nucleus	0	0.038917886322285405	0	0	0	1	0	0
Pcordatum_s10868_g71420	A0A7K5TTW5, RBM3 protein (Fragment), Q6Q151, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding_Stress response	mRNA-processing/splicing_posttranscriptional base modification	Nucleus	0	0.0023122493956375537	0	0	0	1	0	0
Pcordatum_s8959_g66119	Q99181, Protein HSH49, Q4G338, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_Spliceosome component_protein folding_rotamase_RNA-binding_U2-type prespliceosome assembly	mRNA-processing/splicing	Nucleus	0	0.11919916793822379	0	0.01940302574054137	0	1	0	1
Pcordatum_s1333_g22979	Q9QZH3, peptidylprolyl isomerase	Peptidyl-prolyl cis-trans isomerase E_accelerate the folding of proteins_rotamase_positive regulation of viral genome replication_RNA-binding	mRNA-processing/splicing	Nucleus	0	0.007280482489707019	0	0	0	1	0	0

					relative share				No. of proteins					relative share				No. of proteins
Accession	Protein function	Protein function (translated)	Biological process	Kategory	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG		Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG
													Sum total	0.5789853715936137	1.7260219976151212	0.1363444028271874	0.5006180710319132	21	61	7	41
	RNA polymerase II constituents													4.246491675404241	3.4477820468152682
Pcordatum_s5255_g51380	Q54DH7, DNA-directed RNA polymerase II subunit rpb3 (RNA polymerase II subunit 3) (RNA polymerase II subunit B3) (DNA-directed RNA polymerase II subunit C), O28002, DNA-directed RNA polymerase	Rpb3_DNA-directed RNA polymerase II subunit polr2c_transcription by RNA polymerase II	Transcription/RNA polymerase	Nucleus	0.005348594656753938	0.020466800267901687	0	0	1	1	0	0
Pcordatum_s1739_g27204	A8XGH1, DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA polymerases I, II, and III subunit ABC1) (RPB5 homolog), P31815, DNA-directed RNA polymerase	Rpb5_RPABC1_DNA-directed RNA polymerases I, II, and III subunit RPABC1_Rpb5_transcription, DNA-templated	Transcription/RNA polymerase	Nucleus	0	0.01322235151548402	0	0	0	1	0	0
Pcordatum_s2294_g32292	Q923G2, DNA-directed RNA polymerases I, II, and III subunit RPABC3 (RNA polymerases I, II, and III subunit ABC3) (DNA-directed RNA polymerase II subunit H) (RPB17) (RPB8 homolog)	Rpb5_RpABC3_DNA-directed RNA polymerases I, II, and III subunit RPABC3_Polr2h_transcription, DNA-templated	Transcription/RNA polymerase	Nucleus	0	0.012095517823429621	0	0	0	1	0	0
Pcordatum_s766_g16002	A0A812TRV7, POLR2I protein	Rpb9_DNA-directed RNA polymerase II subunit RPB9_POLR2I	Transcription/RNA polymerase	Nucleus	0	0.014593591099696141	0	0	0	1	0	0
Pcordatum_s348_g9186	O08740, DNA-directed RNA polymerase II subunit RPB11 (RNA polymerase II subunit B11) (DNA-directed RNA polymerase II subunit J) (RNA polymerase II 13.3 kDa subunit) (RPB14), Q980K0, DNA-directed RNA polymerase	Rpb11_DNA-directed RNA polymerase II subunit RPB11_Polr2j_transcription	Transcription/RNA polymerase	Nucleus	0	0.00411719887213313	0	0	0	1	0	0
Pcordatum_s771_g16064	P20290, Transcription factor BTF3 (Nascent polypeptide-associated complex subunit beta) (NAC-beta) (RNA polymerase B transcription factor 3)	BTF3_transcription factor_form a stable complex with RNA polymerase II. Required for the initiation of transcription	Transcription/Transcription factors/regulation_chromatin-binding/RNA-binding	Nucleus	0	0	0	0.01733277987797062	0	0	0	1
Pcordatum_s643_g14257	Q64152, Transcription factor BTF3 (Nascent polypeptide-associated complex subunit beta) (NAC-beta) (RNA polymerase B transcription factor 3)	BTF3_transcription factor_form a stable complex with RNA polymerase II. Required for the initiation of transcription	Transcription/Transcription factors/regulation_chromatin-binding/RNA-binding	Nucleus	0	0	0	0.0023075408147505408	0	0	0	1

				Sum	0.005348594656753938	0.0644954595786446	0	0.01964032069272116	1	5	0	2
					Nuclei	3.2838292504331186
	RNA polymerase (I, II or III) constituents_no clear assignments
Pcordatum_s116_g4023	O27124, DNA-directed RNA polymerase subunit Rpo2C (EC 2.7.7.6) (DNA-directed RNA polymerase subunit B'), Q8CFI7, DNA-directed RNA polymerase	Rpo2C_DNA-directed RNA polymerase subunit_transcription, DNA-templated	Transcription/RNA polymerase	Nucleus	0.017382932634450298	0.001560231823632932	0	0.001524866857519628	1	1	0	1
Pcordatum_s3724_g42733	A0A813BCS9, RpoC2 protein, Q19VA0, DNA-directed RNA polymerase	RpoC2_DNA-directed RNA polymerase subunit beta_transcription, DNA-templated	Transcription/RNA polymerase	Nucleus	0	0	0	0.0023176384722901062	0	0	0	1
Pcordatum_s5600_g53141	P31813, DNA-directed RNA polymerase subunit Rpo1N (EC 2.7.7.6) (DNA-directed RNA polymerase subunit A'), P35084;P24928, DNA-directed RNA polymerase;RNA-directed RNA polymerase	RpoN1_DNA-directed RNA polymerase subunit_transcription, DNA-templated_Forms the clamp head domain (Rpb10?)	Transcription/RNA polymerase	Nucleus	0.006685743320942422	0	0	0	1	0	0	0
Pcordatum_s13520_g77097	A0A7S2IHT2, DNA-directed RNA polymerase (EC 2.7.7.6) (Fragment), A1B017, DNA-directed RNA polymerase	Rpo2C_DNA-directed RNA polymerase subunit_transcription, DNA-templated	Transcription/RNA polymerase	Nucleus	0	0	0	0.00523028518288177	0	0	0	1
Pcordatum_s7160_g59875	P49465, DNA-directed RNA polymerase	RpoA_DNA-directed RNA polymerase subunit alpha_transcription, DNA-templated	Transcription/RNA polymerase	Nucleus	0	0.01032130940248874	0	0.004505213087018348	0	1	0	1
Pcordatum_s18283_g83660	A0A813EBT7, Hypothetical protein, A5EX69, DNA-directed RNA polymerase	RpoC2_DNA-directed RNA polymerase subunit beta_transcription, DNA-templated	Transcription/RNA polymerase	Nucleus	0	0	0	0.0026814631018929115	0	0	0	1
Pcordatum_s632_g14073	O15160, DNA-directed RNA polymerases I and III subunit RPAC1 (DNA-directed RNA polymerase I subunit C) (RNA polymerases I and III subunit AC1) (AC40) (DNA-directed RNA polymerases I and III 40 kDa polypeptide) (RPA40) (RPA39) (RPC40), Q2NFZ6, DNA-directed RNA polymerase	RpAC1_DNA-directed RNA polymerases I, II, and III subunit RPABC1_POLR1C_transcription, DNA-templated	Transcription/RNA polymerase	Nucleus	0	0.004557143978514939	0	0	0	1	0	0

				Sum	0.02406867595539272	0.016438685204636608	0	0.016259466701602766	2	3	0	5
					Nuclei	1.0110224096720328

	Cold-shock proteins
Pcordatum_s5233_g51267	Q9KN00, Cold shock-like protein CspA	Activator_DNA-binding_CspA_negative regulation of DNA-templated transcription, termination	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0.10429759580670178	0.11441400363018168	0	8.60034070888509E-4	1	1	0	1
Pcordatum_s676_g14708	P72366, Cold shock-like protein CspA	Activator_DNA-binding_CspA	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0.07488032519455512	0.2926461485819515	0	0.014392402286971787	1	1	0	1
Pcordatum_s12129_g74351	P0A9Y4, Cold shock protein CspA (CSP-A) (7.4 kDa cold shock protein) (CS7.4)	Activator_DNA-binding_CspA	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0.020057229962827265	0.1891089684289285	0	0.022552063135473456	1	1	0	1
Pcordatum_s18023_g83425	Q9Z3S6, Cold shock protein CspA	Activator_DNA-binding_CspA_stress response	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0.002674297328376969	0.025614404521033217	0	0	1	1	0	0
Pcordatum_s4306_g46247	Q9S1B7, Cold shock-like protein CspA	Activator_DNA-binding_CspA_stress response	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0	0.019664125206472385	0	0.016010891008126908	0	1	0	1
Pcordatum_s155_g5017	Q9Z3S6, Cold shock protein CspA	Activator_DNA-binding_CspA_stress response	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0	0.016636421244293022	0	0	0	1	0	0
Pcordatum_s5021_g50221	Q9S1B7, Cold shock-like protein CspA	Activator_DNA-binding_CspA_stress response	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0	0.004985416184084707	0	0	0	1	0	0
Pcordatum_s4008_g44466	P42016, Cold shock protein CspB (Major cold shock protein)	Activator_DNA-binding_CspA_stress response	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0	0.0022838284197473644	0	0	0	1	0	0
Pcordatum_s1810_g27893	Q81DK5, Cold shock-like protein CspE	Activator_DNA-binding_CspE_negative regulation of DNA-templated transcription, termination	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0	0.006312646757160746	0	0.011658499185961088	0	1	0	1
Pcordatum_s64_g2440	Q9S170, Cold shock-like protein CspG	Activator_DNA-binding_CspG_stress response	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0.002674297328376969	0.022499842576413936	0	0	1	1	0	0
Pcordatum_s12818_g75775	Q9S170, Cold shock-like protein CspG	Activator_DNA-binding_CspG_stress response	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0	0.037543964145961194	0	0.009427519714943372	0	1	0	1
Pcordatum_s2497_g34001	P48859, Cold shock protein ScoF	Activator_DNA-binding_ScoF_regulation of gene expression	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0	0.023347686688811577	0	0.009437843439442779	0	1	0	1
Pcordatum_s107_g3743	P48859, Cold shock protein ScoF	Activator_DNA-binding_ScoF_regulation of gene expression	Transcription/stress response/coldshockprotein(CSP)	Nucleus	0	0.017908187412889482	0	0	0	1	0	0

					relative share				No. of proteins					relative share				No. of proteins
Accession	Protein function	Protein function (translated)	Biological process	Kategory	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG		Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG
													Sum total	0.15243494771748725	0.8041150333735769	0.014888181917911265	0.15690322784176616	6	17	2	13
	NPC components													10.238654293584363	5.124910713656645
Pcordatum_s945_g18443	Q02199, Nucleoporin NUP49/NSP49 (Nuclear pore protein NUP49/NSP49), P49687, Hydrolases acting on peptide bonds (peptidases) serine endopeptidases	NUP_Component Nuclear pore complex_NLS-bearing protein import into nucleus_mRNA/tRNA/ribosomal large subunit export	Nuclear import/export	Nucleus	0.005348594656753938	0.004401626138503571	0	2.2100305994057822E-4	1	1	0	1
Pcordatum_s548_g12716	A0A7S4RL33, Nuclear pore complex protein Nup85	NUP_Component Nuclear pore complex_mRNA/protein transport	Nuclear import/export	Nucleus	0	0	0	3.244588363291557E-4	0	0	0	1

				Sum	0.005348594656753938	0.004401626138503571	0	5.454618962697339E-4	1	1	0	2
					Nuclei	8.06953917148952

	Import_Export
Pcordatum_s5186_g51027	O80480, Importin subunit alpha-4 (IMPa-4), Q8GUG9, RING-type E3 ubiquitin transferase	Importin a subunit_NLS-bearing protein import into nucleus	Nuclear import/export	Nucleus	0.006685743320942422	0.014527468829257742	0	0.001680702348503369	1	1	0	1
Pcordatum_s942_g18394	P38545, GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4), Q5R9Y4, small monomeric GTPase	RAN GTP_Nucleocytoplasmic transport_protein transport	Nuclear import/export	Nucleus	0.05482309523172786	0.12080292300631304	0.006268708175962638	0.09046822954571099	1	1	1	1
Pcordatum_s12353_g74818	P32836, GTP-binding nuclear protein GSP2/CNR2, Q4R8X3, small monomeric GTPase	GSP2/CNR2_Nucleus organization_mRNA export_protein import	Nuclear import/export	Nucleus	0	0.001406983311543408	0	0.0013635906883690465	0	1	0	1
Pcordatum_s8024_g63084	Q96VN3, Nuclear transport factor 2 (NTF-2)	Nuclear transport factor (NTF)_mRNA transport_	Nuclear import/export	Nucleus	0	0.0021031522158740175	0	0.0029320131134847106	0	1	0	1

				Sum	0.06150883855267028	0.1388405273629882	0.006268708175962638	0.0964445356960681	2	4	1	4
					9.812043698018346	1.4395893594275295

	Import_Export_further proteins
Pcordatum_s7752_g62085	Q9PW80, Insulin-like growth factor 2 mRNA-binding protein 3 (IGF2 mRNA-binding protein 3) (IMP-3) (Decapentaplegic and Vg-related 1 RNA-binding protein) (IGF-II mRNA-binding protein 3) (VICKZ family member 3) (Vg1 RNA-binding protein) (Vg1-RBP)	mRNA transport, Translation regulation, Transport	Nuclear import/export_mRNA transport_Translation regulation	Nucleus	0	0.0017822416967792304	0	0.001488666001683753	0	1	0	1
Pcordatum_s441_g10901	Q9PW80, Insulin-like growth factor 2 mRNA-binding protein 3 (IGF2 mRNA-binding protein 3) (IMP-3) (Decapentaplegic and Vg-related 1 RNA-binding protein) (IGF-II mRNA-binding protein 3) (VICKZ family member 3) (Vg1 RNA-binding protein) (Vg1-RBP)	mRNA transport, Translation regulation, Transport	Nuclear import/export_mRNA transport_Translation regulation	Nucleus	0	0.001170088677299518	0	0	0	1	0	0
Pcordatum_s1393_g23648	Q5RB68, Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2 mRNA-binding protein 2) (IMP-2) (IGF-II mRNA-binding protein 2) (VICKZ family member 2)	mRNA transport, Translation regulation, Transport	Nuclear import/export_mRNA transport_Translation regulation	Nucleus	0	0.015286569894488058	0	0.0062886930110307715	0	1	0	1
Pcordatum_s604_g13656	O42254, Insulin-like growth factor 2 mRNA-binding protein 1 (IGF2 mRNA-binding protein 1) (IMP-1) (IGF-II mRNA-binding protein 1) (VICKZ family member 1) (Zip-code binding polypeptide) (Zipcode-binding protein 1) (ZBP-1), B9DTE3, polyribonucleotide nucleotidyltransferase	mRNA transport, Translation regulation, Transport	Nuclear import/export_mRNA transport_Translation regulation	Nucleus	0.005348594656753938	0.009044294053651335	0	0	1	1	0	0
Pcordatum_s17796_g83170	A0A813G3T8, Hypothetical protein (Fragment), P49792, Transferases acyltransferases aminoacyltransferases	E3 SUMO-protein ligase RanBP2_centrosome localization_NLS-bearing protein import into nucleus_nuclear export	Nuclear protein export	Nucleus	0.06418313588104725	0.3877868154241509	0	0.01217453469962485	1	1	0	1
Pcordatum_s18441_g83801	A0A7S3TIX4, Hypothetical protein, Q9ERU9, Transferases acyltransferases aminoacyltransferases	E3 SUMO-protein ligase RanBP2_centrosome localization_NLS-bearing protein import into nucleus_nuclear export	Nuclear protein export	Nucleus	0	0.033860910181048615	0	0.006699268287928699	0	1	0	1
Pcordatum_s2406_g33315	A0A7S2BVC2, Hypothetical protein (Fragment), P49792, Transferases acyltransferases aminoacyltransferases	E3 SUMO-protein ligase RanBP2_centrosome localization_NLS-bearing protein import into nucleus_nuclear export	Nuclear protein export	Nucleus	0.016045783970261813	0.016560221127811928	0.008619473741948627	0.005198786519810587	1	1	1	1
Pcordatum_s50_g1978	A0A7S4VR13, Hypothetical protein (Fragment), H2QII6, Transferases acyltransferases aminoacyltransferases	E3 SUMO-protein ligase RanBP2_centrosome localization_NLS-bearing protein import into nucleus_nuclear export	Nuclear protein export	Nucleus	0	0.033835534309718085	0	0	0	1	0	0
Pcordatum_s6065_g55316	H2QII6, Transferases acyltransferases aminoacyltransferases	E3 SUMO-protein ligase RanBP2_centrosome localization_NLS-bearing protein import into nucleus_nuclear export	Nuclear protein export	Nucleus	0	0.008827903123442511	0	0	0	1	0	0
Pcordatum_s1459_g24337	A0A7S3U1G8, Hypothetical protein, P97343, non-specific serine/threonine protein kinase	Kinase_regulation of cell cycle/protein export from nucleus	Nuclear protein export	Nucleus	0	0.00894223954940891	0	0	0	1	0	0
Pcordatum_s7000_g59218	A0A7S2FDZ7, Hypothetical protein, Q63285, non-specific serine/threonine protein kinase	Kinase_regulation of cell cycle/protein export from nucleus	Nuclear protein export	Nucleus	0	0.1145894596548099	0	0.027506697338655746	0	1	0	1
Pcordatum_s4695_g48498	Q7XKC0, Probable protein arginine N-methyltransferase 6.1 (EC 2.1.1.-), Q54EF2, type I protein arginine methyltransferase	mRNA export_histone methyltransferase activity	Nuclear import/export	Nucleus	0	0	0	5.56584390693912E-4	0	0	0	1
Pcordatum_s6018_g55104	Q5RBU8, Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2/B1), Q4KMD7, polynucleotide adenylyltransferase;RNA uridylyltransferase	Ribonucleoproteins A2/B1_nuclear_mRNA transport_mRNA export from nucleus	Nuclear protein export_Ribonucleoprotein_mRNA-export	Nucleus	0	0.02918660217947616	0	0	0	1	0	0

				Sum	0.085577514508063	0.6608728798720851	0.008619473741948627	0.05991323024942832	3	12	1	7
					9.928392042263624	11.030499893275092

					relative share				No. of proteins					relative share				No. of proteins
Accession	Protein function	Protein function (translated)	Biological process	Kategory	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG		Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG
													Sum total	0.10429759580670178	1.0426523565224262	0.007835885219953298	0.3030611238395877	9	30	2	32
	Ubiquitin-conjugation system													13.310250581659668	3.440402857722883
Pcordatum_s760_g15913	P84589, Ubiquitin (Fragment), A7E320, RING-type E3 ubiquitin transferase	Ubiquitin_Fragment	Ubiquitin_Ubl conjugation pathway	Nucleus	0.005348594656753938	0.0017465124699458496	0	0	1	1	0	0
Pcordatum_s10634_g70829	Q5U300, E1 ubiquitin-activating enzyme	E1 Ubiquitin-like modifier-activating enzyme 1 Uba1_Catalyzes the first step in ubiquitin conjugation to mark cellular proteins for degradation through the ubiquitin-proteasome_cellular response to DNA damage stimulus	Ubiquitin_Ubl conjugation pathway	Nucleus	0.005348594656753938	0.022853074705334864	0	0	1	1	0	0
Pcordatum_s5982_g54945	A0A1Q9DYY1, Ubiquitin-activating enzyme E1 2, Q29504, E1 ubiquitin-activating enzyme	E1 Ubiquitin-like modifier-activating enzyme 1 Uba1_Catalyzes the first step in ubiquitin conjugation to mark cellular proteins for degradation through the ubiquitin-proteasome	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0	0	0.002943165750170201	0	0	0	1
Pcordatum_s7294_g60369	P31255, Ubiquitin-activating enzyme E1 Y (EC 6.2.1.45) (Fragment), Q55C16, E1 ubiquitin-activating enzyme	E1 Ubiquitin-like modifier-activating enzyme 1 Uba1_Catalyzes the first step in ubiquitin conjugation to mark cellular proteins for degradation through the ubiquitin-proteasome	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0	0	0.00435683780570936	0	0	0	1
Pcordatum_s5589_g53083	A0A813IQ53, Hypothetical protein (Fragment), P31251, E1 ubiquitin-activating enzyme	E1 Ubiquitin-activating enzyme Uba2_ cellular response to DNA damage stimulus	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.008031100763663986	0	0.011771758732841437	0	1	0	1
Pcordatum_s2674_g35403	A0A7S1M4I5, Hypothetical protein (Fragment), P20973, E1 ubiquitin-activating enzyme	E1 Ubiquitin-activating enzyme Uba1_ cellular response to DNA damage stimulus	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.0018776694734799126	0	0.015187103006466245	0	1	0	1
Pcordatum_s6888_g58764	Q5UQ88, E2 ubiquitin-conjugating enzyme	E2 ubiquitin-conjugating enzyme R521_DNA protection	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.009774133114113077	0	0	0	1	0	0
Pcordatum_s507_g12087	P46595, Ubiquitin-conjugating enzyme E2 4 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 4) (Ubiquitin carrier protein 4) (Ubiquitin-protein ligase 4), P46595, E2 ubiquitin-conjugating enzyme	E2 Ubiquitin-conjugating enzyme E24_positive regulation of mitotic metaphase/anaphase transition	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.01579771244557437	0	0	0	1	0	0
Pcordatum_s2708_g35653	P53152, Ubiquitin-conjugating enzyme variant MMS2 (UEV MMS2), Q94490, E2 ubiquitin-conjugating enzyme	E2 Ubiquitin-conjugating enzyme E2B_protein ubiquitination and degradation	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.12548585880413787	0.0023507655659859893	0.017709708855678873	0	1	1	1
Pcordatum_s212_g6315	O74196, Ubiquitin-conjugating enzyme E2-16 kDa (EC 2.3.2.23) (Colletotrichum hard-surface-induced protein 1) (E2 ubiquitin-conjugating enzyme 1) (Ubiquitin carrier protein) (Ubiquitin-protein ligase), O74196, E2 ubiquitin-conjugating enzyme	E2 Ubiquitin-conjugating enzyme E2-16 kDa_Catalyzes the covalent attachment of ubiquitin to other proteins.	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.03918752308079462	0	0.001820291160639869	0	1	0	1
Pcordatum_s1535_g25128	O74196, Ubiquitin-conjugating enzyme E2-16 kDa (EC 2.3.2.23) (Colletotrichum hard-surface-induced protein 1) (E2 ubiquitin-conjugating enzyme 1) (Ubiquitin carrier protein) (Ubiquitin-protein ligase), O74196, E2 ubiquitin-conjugating enzyme	E2 Ubiquitin-conjugating enzyme E2-16 kDa_Catalyzes the covalent attachment of ubiquitin to other proteins.	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.05650191510454979	0	0.008868606834563097	0	1	0	1
Pcordatum_s3011_g37904	P70711, Ubiquitin-conjugating enzyme E2 D2B (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme D2B) (Ubiquitin carrier protein D2B) (Ubiquitin-conjugating enzyme E2(17)KB 2B) (Ubiquitin-conjugating enzyme E2-17 kDa 2B) (Ubiquitin-protein ligase D2B), Q66KB0, E2 ubiquitin-conjugating enzyme	E2 Ubiquitin-conjugating enzyme E2-16 kDa_Catalyzes the covalent attachment of ubiquitin to other proteins_Apoptosis regulation	Ubiquitin_Ubl conjugation pathway	Nucleus	0	9.487675778036193E-4	0	0	0	1	0	0
Pcordatum_s7734_g62018	P53152, Ubiquitin-conjugating enzyme variant MMS2 (UEV MMS2), P21734, E2 ubiquitin-conjugating enzyme	E2 Ubiquitin-conjugating enzyme variant MMS2_free ubiquitin chain polymerization_postreplication repair	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.054877134314500954	0	0.004036274856654799	0	1	0	1
Pcordatum_s805_g16552	A0A7S3HIG9, Hypothetical protein (Fragment), Q5BDP1, HECT-type E3 ubiquitin transferase	E3 ubiquitin ligase RSP5_cellular response to UV_chromatin assembly/disassembly	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.031821342648479946	0	0.009457209842335825	0	1	0	1
Pcordatum_s2839_g36673	A0A7S2CC24, Hypothetical protein (Fragment), O95714, HECT-type E3 ubiquitin transferase	E3 ubiquitin ligase HERC2_cellular response to DNA damage stimulus	Ubiquitin_Ubl conjugation pathway	Nucleus	0	7.393803880820197E-4	0	0	0	1	0	0
Pcordatum_s7766_g62144	A0A813JWM0, Hypothetical protein, Q5U5Q3, RING-type E3 ubiquitin transferase	E3 ubiquitin ligase MEX3C_post-transcriptional regulation_RNA-binding	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.0011572847376510296	0	0	0	1	0	0
Pcordatum_s1458_g24327	A0A813K212, Hypothetical protein, Q9ZT50, RING-type E3 ubiquitin transferase	E3 ubiquitin ligase RHA2A_signaling and responses to salt and osmotic stresses	Ubiquitin_Ubl conjugation pathway	Nucleus	0.008022891985130906	0	0	0	1	0	0	0
Pcordatum_s10309_g69962	P19848, Ubiquitin, A7E320, RING-type E3 ubiquitin transferase	E3 ubiquitin ligase UHRF1_histone monoubiquination_DNA repair_chromatin organization	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0	0.005485119653967308	0.0098030169352393	0	0	1	1
Pcordatum_s9870_g68792	A0A7S1LPN1, Hypothetical protein, Q05A36, RING-type E3 ubiquitin transferase	E3 ubiquitin ligase MEX3C_post-transcriptional regulation_RNA-binding	Ubiquitin_Ubl conjugation pathway	Nucleus	0.01203433797769636	0.017866280973949357	0	0.010497720702830747	1	1	0	1
Pcordatum_s3749_g42890	Q54KL5, WD repeat-containing protein 5 homolog, Q922B6, RING-type E3 ubiquitin transferase	E3 ubiquitin-protein ligase TRAF7_apoptosis	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0	0	0.008857378842224328	0	0	0	1
Pcordatum_s8425_g64409	A0A7S3LZT3, Hypothetical protein, Q5WA76, RING-type E3 ubiquitin transferase;Transferases transferring phosphorus-containing groups protein-serine/threonine kinases	PUB70_Kinase/Transferase_ U-box domain-containing protein 70_functions as an E3 ubiquitin ligase	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.0019986761284817647	0	0.0019912203889756617	0	1	0	1
Pcordatum_s754_g15838	A0A7S4VRD1, Hypothetical protein, O95155, RING-type E3 ubiquitin transferase	E4 B_Ubiquitin conjugation factor	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0	0	2.797051138459623E-4	0	0	0	1

				Sum	0.03075441927633514	0.39066436673054306	0.007835885219953298	0.10757999882817569	4	16	2	14
					3.9248174792073383	3.6313847461041826
	Deubiquitylation
Pcordatum_s192_g5850	F1M625, Ubiquitin carboxyl-terminal hydrolase 46 (EC 3.4.19.12) (Deubiquitinating enzyme 46) (Ubiquitin thioesterase 46) (Ubiquitin-specific-processing protease 46), Q9FPT1, ubiquitinyl hydrolase 1	DUBs_Usp46 Ubiquitin carboxyl-terminal hydrolase _Deubiquitinating enzyme	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0	0	0.002331353201187128	0	0	0	1
Pcordatum_s6358_g56600	P56399, Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.4.19.12) (Deubiquitinating enzyme 5) (Isopeptidase T) (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5), P56399, ubiquitinyl hydrolase 1	DUBs_Usp5 Ubiquitin carboxyl-terminal hydrolase_Deubiquitinating enzyme	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0.004866939865966955	0	0.0044057059468616605	0	1	0	1
Pcordatum_s6240_g56095	A0A7S2CGX2, Hypothetical protein (Fragment), Q6P8X6, ubiquitinyl hydrolase 1	DUBs_Usp50 Ubiquitin carboxyl-terminal hydrolase _Deubiquitinating enzyme	Ubiquitin_Ubl conjugation pathway	Nucleus	0.008022891985130906	0.0029546939552369633	0	0.0029895245480682647	1	1	0	1
Pcordatum_s2856_g36801	Q84WC6, Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.4.19.12) (Deubiquitinating enzyme 7) (AtUBP7) (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing protease 7), Q84WC6, ubiquitinyl hydrolase 1	DUBs_Usp7 Ubiquitin carboxyl-terminal hydrolase_Deubiquitinating enzyme	Ubiquitin_Ubl conjugation pathway	Nucleus	0.004011445992565453	0.06370822754748215	0	0.021826614261343632	1	1	0	1
Pcordatum_s2082_g30427	A0A813KVR4, Hypothetical protein (Fragment), Q9FPT1, ubiquitinyl hydrolase 1	DUBs_Usp12 Ubiquitin carboxyl-terminal hydrolase_Deubiquitinating enzyme	Ubiquitin_Ubl conjugation pathway	Nucleus	0	0	0	0.0012402937684717556	0	0	0	1

				Sum	0.01203433797769636	0.07152986136868607	0	0.03279349172593244	2	3	0	5
					Nuclei	2.1812212608065056

	SUMO related proteins

					relative share				No. of proteins					relative share				No. of proteins
Accession	Protein function	Protein function (translated)	Biological process	Kategory	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG		Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG	Nuclei_geLC	Nuclei_SG	Cell_geLC	Cell_SG
													Sum total	0.1631321370309951	0.15913604049940888	0.08619473741948627	0.4330843496332041	3	20	9	23
	Proteasome subunits													1.8925997330565032	0.367448144072136
Pcordatum_s2212_g31602	P85200, 26S proteasome regulatory subunit 6B homolog, D1C4U5, Hydrolases acting on peptide bonds (peptidases) metalloendopeptidases	19S RPT3 (Rpt3, O74894, PRS6B_SCHPO)_26S proteasome regulatory subunit 6B homolog	Proteasome	Nucleus	0.0427887572540315	0.02251144297473646	0.005485119653967308	0.0037024719193188803	1	1	1	1
Pcordatum_s141_g4689	Q27562, Proteasome subunit alpha type-1 (Proteasome subunit C2), Q8ZST5, proteasome endopeptidase complex	20S a1	Proteasome_proteasomal protein catabolic process_alpha_type	Nucleus	0	0.010275560331604277	0.008619473741948627	0.045712246392919244	0	1	1	1
Pcordatum_s766_g16006	P0DKK4, Proteasome subunit alpha type-4-3 (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3), Q8TW10, proteasome endopeptidase complex	20S a4	Proteasome_proteasomal protein catabolic process_alpha_type	Nucleus	0	0.0028089639513102266	0.006268708175962638	0.009203185935127802	0	1	1	1
Pcordatum_s1553_g25328	Q9Z2U1, Proteasome subunit alpha type-5 (Macropain zeta chain) (Multicatalytic endopeptidase complex zeta chain) (Proteasome zeta chain), A9A2U7, proteasome endopeptidase complex	20S a5	Proteasome_proteasomal protein catabolic process_alpha_type	Nucleus	0	0.01542185953992452	0.005485119653967308	0.04909993514179017	0	1	1	1
Pcordatum_s5884_g54489	O23715, Proteasome subunit alpha type-3 (20S proteasome alpha subunit G-1) (DiDi 17A-2a) (Proteasome component 8) (Proteasome subunit alpha type-7), Q8TW10, proteasome endopeptidase complex	20S a3	Proteasome_proteasomal protein catabolic process_alpha_type	Nucleus	0	0.010684401869983812	0.005485119653967308	0.05536688804684956	0	1	1	1
Pcordatum_s9211_g66893	P60901, Proteasome subunit alpha type-6 (Macropain iota chain) (Multicatalytic endopeptidase complex iota chain) (Proteasome iota chain), A3MS44, proteasome endopeptidase complex	20S a6	Proteasome_proteasomal protein catabolic process_alpha_type	Nucleus	0	0.005325525362403274	0	0.02499305881218348	0	1	0	1
Pcordatum_s492_g11827	Q5VRG3, Proteasome subunit alpha type-4-2 (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3), Q8TW10, proteasome endopeptidase complex	20S a4	Proteasome_proteasomal protein catabolic process_alpha_type	Nucleus	0	0.0037928154837905364	0	0.012903826712071973	0	1	0	1
Pcordatum_s5438_g52296	Q9CWH6, Proteasome subunit alpha type-8 (Proteasome alpha 4 subunit) (Alpha4s) (Proteasome subunit alpha-type 7-like), C7P6N4, proteasome endopeptidase complex	20S a7	Proteasome_proteasomal protein catabolic process_alpha_type	Nucleus	0	0.0033751358919390253	0	0.02341933134907688	0	1	0	1
Pcordatum_s1505_g24809	Q10KF0, Proteasome subunit alpha type-2 (20S proteasome alpha subunit B) (20S proteasome subunit alpha-2), Q8TW10, proteasome endopeptidase complex	20S a2	Proteasome_proteasomal protein catabolic process_alpha_type	Nucleus	0.006685743320942422	0.014918112242768816	0.009403062263943957	0.05617146035692374	1	1	1	1
Pcordatum_s3585_g41835	Q7DLR9, Proteasome subunit beta type-4 (20S proteasome beta subunit G-1) (Proteasome component H) (Proteasome subunit beta type-7), A3MXQ6, proteasome endopeptidase complex	20S b4	Proteasome_proteasomal protein catabolic process_alpha_type	Nucleus	0	0.009561410809873752	0.004701531131971979	0.023782545597888113	0	1	1	1
Pcordatum_s542_g12629	Q86A21, Proteasome subunit beta type-1, Q5B7I7, proteasome endopeptidase complex	20S b1	Proteasome_proteasomal protein catabolic process_beta_type	Nucleus	0	0	0.005485119653967308	0.01317051036903109	0	0	1	1
Pcordatum_s1126_g20627	Q09720, Probable proteasome subunit beta type-4, A5UM14, proteasome endopeptidase complex	20S b4	Proteasome_proteasomal protein catabolic process_beta_type	Nucleus	0	0.0035479818269446677	0	0.013677653915607775	0	1	0	1
Pcordatum_s1026_g19439	O65084, Proteasome subunit beta type-3 (20S proteasome alpha subunit C) (20S proteasome subunit beta-3), A8AB58, proteasome endopeptidase complex	20S b3	Proteasome_proteasomal protein catabolic process_beta_type	Nucleus	0	0.0023159470226028593	0	0.030289581614298663	0	1	0	1
Pcordatum_s679_g14754	O24361, Proteasome subunit beta type-5 (EC 3.4.25.1) (20S proteasome subunit E) (Proteasome epsilon chain), O24361, proteasome endopeptidase complex	20S b5	Proteasome_proteasomal protein catabolic process_beta_type	Nucleus	0	0.0010801420888062296	0	0.009095728773550039	0	1	0	1
Pcordatum_s2479_g33861	Q9Z2X2, 26S proteasome non-ATPase regulatory subunit 10 (26S proteasome regulatory subunit p28) (Gankyrin), Q80SY4, RING-type E3 ubiquitin transferase	19S RPN10 (Rpn10, O94444, RPN10_SCHPO	Proteasome_Apoptosis_nucleus	Nucleus	0.11365763645602117	0.013593926774252437	0.03526148348978984	0.012976846340100621	1	1	1	1
Pcordatum_s2306_g32411	O75832, 26S proteasome non-ATPase regulatory subunit 10 (26S proteasome regulatory subunit p28) (Gankyrin) (p28(GANK)), Q3UES3, Transferases glycosyltransferases pentosyltransferases;NAD+ ADP-ribosyltransferase	19S RPN10	Proteasome_Apoptosis_nucleus	Nucleus	0	0	0	2.234822609335014E-4	0	0	0	1
Pcordatum_s373_g9671	Q9SSB5, 26S proteasome regulatory subunit 7 homolog A (26S proteasome AAA-ATPase subunit RPT1a) (26S proteasome subunit 7 homolog A) (Regulatory particle triple-A ATPase subunit 1a), D3F124, Hydrolases acting on peptide bonds (peptidases) metalloendopeptidases	19S RPT1 (Rpt1, O42931, PRS7_SCHPO)	Proteasome_ubiquitin-dependent protein catabolic process_nuclear proteosome complex	Nucleus	0	0.02665539526550092	0	0.015238420206350153	0	1	0	1
Pcordatum_s5938_g54730	F6XBL2, 26S proteasome non-ATPase regulatory subunit 11 (26S proteasome regulatory subunit RPN6)	19S RNP6	Proteasome_ubiquitin-dependent protein catabolic process_nuclear proteosome complex	Nucleus	0	0.007608266244807903	0	0.010613693053229187	0	1	0	1
Pcordatum_s1561_g25409	O48844, 26S proteasome non-ATPase regulatory subunit 1 homolog A (26S proteasome regulatory subunit RPN2a) (AtRPN2a) (26S proteasome regulatory subunit S1 homolog A), Q9ZT94, Hydrolases acting on peptide bonds (peptidases) aspartic endopeptidases;RNA-directed DNA polymerase	19S RNP2	Proteasome_ubiquitin-dependent protein catabolic process_nuclear proteosome complex	Nucleus	0	0.00251308129159629	0	0.0035925656990095063	0	1	0	1
Pcordatum_s18518_g83872	Q54NQ0, 26S proteasome non-ATPase regulatory subunit 13 (26S proteasome regulatory subunit RPN9) (26S proteasome regulatory subunit S11)	19S RNP9	Proteasome_ubiquitin-dependent protein catabolic process_nuclear proteosome complex	Nucleus	0	0.0016017394988807213	0	0.00645978802180378	0	1	0	1
Pcordatum_s5553_g52902	Q9C5U3, 26S proteasome regulatory subunit 8 homolog A (26S proteasome AAA-ATPase subunit RPT6a) (26S proteasome subunit 8 homolog A) (Regulatory particle triple-A ATPase subunit 6a), B0K657, Hydrolases acting on peptide bonds (peptidases) metalloendopeptidases	19S RPT6 (Rpt6, P41836, PRS8_SCHPO)	Proteasome_ubiquitin-dependent protein catabolic process_nuclear proteosome complex	Nucleus	0	0.001207021445458861	0	0.0072633807083853155	0	1	0	1
Pcordatum_s10166_g69583	Q9D8W5, 26S proteasome non-ATPase regulatory subunit 12 (26S proteasome regulatory subunit RPN5) (26S proteasome regulatory subunit p55)	19S RNP5	Proteasome_ubiquitin-dependent protein catabolic process_nuclear proteosome complex	Nucleus	0	3.3731058222325833E-4	0	0.005546552859699352	0	1	0	1
Pcordatum_s114_g3952	O48844, 26S proteasome non-ATPase regulatory subunit 1 homolog A (26S proteasome regulatory subunit RPN2a) (AtRPN2a) (26S proteasome regulatory subunit S1 homolog A)	19S RNP2	Proteasome_ubiquitin-dependent protein catabolic process_nuclear proteosome complex	Nucleus	0	0	0	5.811955470552706E-4	0	0	0	1

				Sum	0.1631321370309951	0.15913604049940888	0.08619473741948627	0.4330843496332041	3	20	9	23
					1.8925997330565032	0.367448144072136