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Metadata
Organism_sample
Data_ExtracellularMetabolites
Results_CalculatedFluxes
Instrument_chemostat
Instrument_measurements_envPara
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Metadata | Values | ||||||||
Asset Title | Characterization of flux distribution and general physiology of S. pyogenes in continuous cultures | ||||||||
Uploader | Martijn Bekker | ||||||||
Uploader SEEK ID | 53 | ||||||||
Project | SysmoLab | ||||||||
ASSAY | |||||||||
Assay SEEK ID | 109 | ||||||||
Assay Title | Physiological characterization of Lactic acid bacteria grown in C-limited continuous cultures | ||||||||
Assay_type | catabolic flux distribution | ||||||||
Technology_type | HPLC | ||||||||
Description | S. pyogenes was grown in C-limited cultures at pH 6.7 and 7.5 and at a growth rate of 0.05 and 0.15 | ||||||||
Experimentalist | Martijn Bekker, Tomas Fiedler | ||||||||
Date | 2010-08-01T0:0:0+0000 | ||||||||
SOP | 2 | ||||||||
Experimental_conditions | |||||||||
Item | temperature | Growth_Medium | Growth_Medium | ||||||
Compound (if concentration) | Glucose | Acetate | |||||||
Unit | ÂșC | mM | mM | ||||||
Start_value (optional) | 65 | 12 | |||||||
End_value (optional) | 37 | ||||||||
Comments | standard medium with additional glucose | standard medium with additional acetate | |||||||
Culture Growth | Chemostat | ||||||||
FACTORS_STUDIED | |||||||||
Item | pH | dilution_rate | |||||||
Compound (if concentration) | |||||||||
Unit | 1/h | ||||||||
Start_value (optional) | 6.5 | 0.05 | |||||||
End_value (optional) | 7.5 | 0.15 | |||||||
SD (optional) | |||||||||
Comments | Growth rate dependent flux distribution | ||||||||
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Sample | Treatment(s) | Culture_start_date | Date_at_sampling | Age_at_sampling_hours | |||||||
Organism | NCBI_ID | Strain | Genotype | Phenotype | organism/cell part | pH | Dilution_rate | date | date | age | |
1 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 6.5 | 0.05 | ||||
2 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 6.5 | 0.15 | ||||
3 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 7.5 | 0.05 | ||||
4 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 7.5 | 0.15 | ||||
5 | Streptococcus_pyogenes | 1314 | M49 | Îldh | whole cell | 6.5 | 0.05 | ||||
6 | Streptococcus_pyogenes | 1314 | M49 | Îldh | whole cell | 6.5 | 0.15 | ||||
7 | Streptococcus_pyogenes | 1314 | M49 | Îldh | whole cell | 7.5 | 0.05 | ||||
8 | Streptococcus_pyogenes | 1314 | M49 | Îldh | whole cell | 7.5 | 0.15 | ||||
9 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 6.5 | 0.05 | ||||
10 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 7.5 | 0.05 | ||||
11 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 7.5 | 0.05 | ||||
11a | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 7.5 | 0.15 | ||||
12 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 7.5 | 0.05 | ||||
13 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 7.5 | 0.15 | ||||
13a | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 7.5 | 0.05 | ||||
14 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 6.5 | 0.15 | ||||
15 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 6.5 | 0.05 | ||||
16 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 6.5 | 0.05 | ||||
17 | Streptococcus_pyogenes | 1314 | M49 | wild-type | whole cell | 6.5 | 0.15 | ||||
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Metabolite | Sample | Glucose | Ethanol | Acetate | Lactate | Formiate | Succinate | Pyruvate | Acetoin | 2,3 Butanediol | CO2 | O2 | Aspartic acid | Serine | Glutamate | Glycine | Histidine | NH3 | Arginine | Threonine | Alanine | Proline | Cysteine | Tyrosine | Valine | Methionine | Ornithine | Lysine | Isoluecine | Leucine | Phenylalanine |
Metabolite ID | CHEBI:17234 | CHEBI:16236 | CHEBI:30089 | CHEBI:24996 | CHEBI:15740 | CHEBI:30779 | CHEBI:15361 | CHEBI:15688 | CHEBI:62064 | CHEBI:16526 | CHEBI:15379 | CHEBI:22660 | CHEBI:17822 | CHEBI:15428 | CHEBI:27570 | CHEBI:16134 | CHEBI:29016 | CHEBI:26986 | CHEBI:16449 | CHEBI:26271 | CHEBI:15356 | CHEBI:18186 | CHEBI:27266 | CHEBI:16811 | CHEBI:18257 | CHEBI:25094 | CHEBI:24898 | CHEBI:25017 | CHEBI:28044 | ||
Unit | mM | mM | mM | mM | mM | mM | mM | mM | mM | % | % | mM | mM | mM | mM | mM | mM | mM | mM | mM | mM | mM | mM | mM | mM | ÎŒM | mM | mM | mM | mM | |
1 | 0 | 19.3 | 35.1 | 70 | 35.4 | 0 | 1.5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
2 | 0 | 0 | 20.3 | 99.7 | 8.1 | 0 | 1.4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
3 | 0 | 8.3 | 22.8 | 83.8 | 13.6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
4 | 0 | 11 | 20.2 | 56.2 | 20.7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
5 | 0 | 44.1 | 40.3 | 1.8 | 65.4 | 0 | 8.2 | 3.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
6 | 0 | 55.7 | 42.1 | 2.3 | 74.6 | 0 | 19.5 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
7 | 0 | 61.1 | 40.8 | 1.7 | 71.5 | 0 | 15.4 | 2.6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
8 | 0 | 55.3 | 39.6 | 0.8 | 69 | 0 | 15 | 2.5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
9 | 0 | 28.5996 | 26.5911 | 33.2897 | 27.1529 | 2.7314 | 0.2222 | 9.0482 | 0 | ||||||||||||||||||||||
10 | 0 | 32.5404 | 58.4248 | 12.1797 | 71.7257 | 4.2334 | 0.2573 | 2.9294 | 0 | ||||||||||||||||||||||
11 | 0 | 16.9109 | 46.1068 | 34.7783 | 45.5907 | 0 | 0 | 1.7379 | 0 | ||||||||||||||||||||||
11a | 0 | 4.5031 | 25.3673 | 65.3299 | 11.4123 | 0 | 0 | 1.7817 | 0 | ||||||||||||||||||||||
12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||||||||
13 | 4.8704 | 0 | 16.1389 | 85.2263 | 0 | 0 | 0 | 1.0621 | 0 | ||||||||||||||||||||||
13a | 0 | 12.0724 | 35.0679 | 66.9688 | 26.5225 | 0 | 0 | 1.6499 | 0 | ||||||||||||||||||||||
14 | 0 | 0 | 15.1085 | 96.3673 | 0 | 0 | 0 | 1.178 | 0 | ||||||||||||||||||||||
15 | 0 | 6.8169 | 32.5884 | 69.796 | 17.6214 | 0.1566 | 0.806 | 0 | 0 | ||||||||||||||||||||||
16 | 0 | 0 | 35.4929 | 75.7861 | 0 | 0.6109 | 0.4942 | 0 | 0 | ||||||||||||||||||||||
17 | 0 | 11.4256 | 44.4907 | 68.0624 | 38.2789 | 0.3511 | 0 | 0 | 0 | ||||||||||||||||||||||
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Metabolite | ||||||||||||||||||||||||||||||||||||||||||||
Sample | Dilution rate | Glucose | Ethanol | Acetate | Lactate | Formate | Succinate | Pyruvate | Acetoin | 2,3-butanediol | CO2 | O2 | Aspartic acid | Serine | Glutamate | Glycine | Histidine | NH3 | Arginine | Threonine | Alanine | Proline | Cysteine | Tyrosine | Valine | Methionine | Ornithine | Lysine | Isoluecine | Leucine | Phenylalanine | Yield glucose | Yield glucose | ATP (calculated) | Lactate (mol/mol glucose) | Formate (mol/mol glucose) | EtOH (mol/mol glucose) | Acetate (mol/mol glucose) | Acetoin (mol/mol glucose) | EtOH+ Acetate (mol/mol glucose) | Carbon balance | Redox balance | PDH flux | Relative PDH flux |
CHEBI:17234 | CHEBI:16236 | CHEBI:30089 | CHEBI:24996 | CHEBI:15740 | CHEBI:30779 | CHEBI:15361 | CHEBI:15688 | CHEBI:62064 | CHEBI:16526 | CHEBI:15379 | CHEBI:22660 | CHEBI:17822 | CHEBI:15428 | CHEBI:27570 | CHEBI:16134 | CHEBI:29016 | CHEBI:26986 | CHEBI:16449 | CHEBI:26271 | CHEBI:15356 | CHEBI:18186 | CHEBI:27266 | CHEBI:16811 | CHEBI:18257 | CHEBI:25094 | CHEBI:24898 | CHEBI:25017 | CHEBI:28044 | ||||||||||||||||
Unit | /hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | mmol/gram/hour | g/mol | g/g | mmol/gram/hour | mol/mol | mol/mol | mol/mol | mol/mol | mol/mol | mol/mol | % | mol NADH produced-mol NADH consumed | mmol/gram/hour | percentage |
1 | 0.05 | -2.7083333333333335 | 0.8041666666666668 | 0.9625 | 2.916666666666667 | 1.475 | 0 | 0.06250000000000001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13.076923076923077 | 0.07264957264957264 | 5.708333333333334 | 1.0769230769230769 | 0.5446153846153846 | 0.29692307692307696 | 0.35538461538461535 | 0 | -0.6523076923076924 | 0.8761538461538462 | 0.5125 | 0.29166666666666674 | 0.16509433962264153 |
2 | 0.15 | -13.928571428571429 | 0 | 1.778571428571429 | 21.364285714285717 | 1.7357142857142855 | 0 | 0.3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 12.102564102564102 | 0.06723646723646723 | 25.221428571428575 | 1.533846153846154 | 0.1246153846153846 | 0 | 0.12769230769230772 | 0 | -0.12769230769230772 | 0.8415384615384617 | 2.1214285714285723 | 0.04285714285714337 | 0.02409638554216896 |
3 | 0.05 | -5 | 0.6384615384615385 | 0.8307692307692308 | 6.446153846153846 | 1.0461538461538462 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11.384615384615385 | 0.06324786324786325 | 8.746153846153847 | 1.2892307692307692 | 0.20923076923076925 | 0.12769230769230772 | 0.16615384615384615 | 0 | -0.29384615384615387 | 0.7915384615384615 | 0.6153846153846154 | 0.42307692307692313 | 0.2879581151832461 |
4 | 0.15 | -9.75 | 1.65 | 1.2299999999999998 | 8.43 | 3.105 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10.76923076923077 | 0.05982905982905983 | 12.54 | 0.8646153846153846 | 0.31846153846153846 | 0.1692307692307692 | 0.12615384615384612 | 0 | -0.29538461538461536 | 0.58 | -0.6450000000000002 | -0.2250000000000001 | -0.07812500000000003 |
5 | 0.05 | -3.25 | 2.205 | 1.415 | 0.09000000000000001 | 3.2700000000000005 | 0 | 0.41 | 0.16000000000000003 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11.641025641025642 | 0.06467236467236467 | 5.855 | 0.027692307692307697 | 1.0061538461538464 | 0.6784615384615384 | 0.43538461538461537 | 0.04923076923076924 | -1.113846153846154 | 0.6830769230769231 | 0.28999999999999965 | 0.34999999999999964 | 0.09668508287292808 |
6 | 0.15 | -7.8 | 6.684 | 3.6119999999999997 | 0.27599999999999997 | 8.952 | 0 | 2.34 | 0.36 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15.076923076923077 | 0.08376068376068375 | 17.244 | 0.03538461538461538 | 1.1476923076923078 | 0.856923076923077 | 0.46307692307692305 | 0.046153846153846156 | -1.3199999999999998 | 0.8738461538461538 | 1.3319999999999987 | 1.3439999999999994 | 0.1305361305361305 |
7 | 0.05 | -5 | 4.7 | 2.215384615384615 | 0.13076923076923078 | 5.5 | 0 | 1.1846153846153846 | 0.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8.461538461538462 | 0.04700854700854701 | 10.846153846153845 | 0.026153846153846156 | 1.1 | 0.9400000000000001 | 0.44307692307692303 | 0.04 | -1.383076923076923 | 0.8630769230769232 | 0.5153846153846152 | 1.4153846153846157 | 0.20467185761957735 |
8 | 0.15 | -9.285714285714285 | 7.8999999999999995 | 3.942857142857142 | 0.11428571428571428 | 9.857142857142856 | 0 | 2.142857142857143 | 0.35714285714285715 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 12.461538461538463 | 0.06923076923076923 | 18.757142857142856 | 0.01230769230769231 | 1.0615384615384615 | 0.8507692307692308 | 0.42461538461538456 | 0.038461538461538464 | -1.2753846153846153 | 0.7976923076923076 | 0.8857142857142856 | 1.9857142857142858 | 0.16767189384800968 |
9 | 0.05 | -4.887218045112782 | 2.150345864661654 | 1.0970751879699248 | 2.5029849624060154 | 2.0415714285714284 | 0.20536842105263156 | 0.016706766917293236 | 0.6803157894736841 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11.666666666666666 | 0.06481481481481481 | 8.635556390977444 | 0.5121492307692309 | 0.41773692307692306 | 0.4399938461538461 | 0.22447846153846154 | 0.1392030769230769 | -0.6644723076923077 | 0.729223076923077 | 1.5299172932330825 | 1.2058496240601504 | 0.3713253084576078 |
10 | 0.05 | -7.222222222222222 | 3.6155999999999997 | 5.158311111111111 | 1.3533000000000002 | 7.969522222222222 | 0.4703777777777778 | 0.028588888888888886 | 0.3254888888888889 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 27.692307692307693 | 0.15384615384615385 | 16.905844444444448 | 0.18738000000000002 | 1.1034723076923076 | 0.5006215384615385 | 0.7142276923076922 | 0.04506769230769231 | -1.214849230769231 | 0.7481615384615385 | 3.026666666666667 | 0.804388888888889 | 0.0916796259618161 |
11 | 0.05 | -5.613636363636301 | 1.460486818181802 | 2.94558727272724 | 3.003580454545421 | 3.9373786363635928 | 0 | 0 | 0.15009136363636197 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11.743589743589745 | 0.06524216524216525 | 10.655424545454427 | 0.5350507692307692 | 0.7013953846153846 | 0.2601676923076923 | 0.5247200000000001 | 0.026736923076923078 | -0.7848876923076924 | 0.686706153846154 | 2.2539786363636116 | 0.4686954545454496 | 0.10637484637684573 |
11a | 0.15 | -11.470588235294118 | 0.7946647058823529 | 2.358935294117647 | 11.52880588235294 | 2.013935294117647 | 0 | 0 | 0.3144176470588236 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13.102564102564104 | 0.0727920227920228 | 17.67017647058823 | 1.0050753846153844 | 0.17557384615384616 | 0.06927846153846154 | 0.20565076923076922 | 0.027410769230769235 | -0.27492923076923076 | 0.6674130769230767 | 3.332770588235294 | 1.1396647058823528 | 0.36138530754767656 |
12 | 0.05 | -7.386363636363637 | 0 | -1.3636363636363638 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6.717948717948718 | 0.037321937321937323 | -2.7272727272727275 | 0 | 0 | 0 | -0.18461538461538463 | 0 | 0.18461538461538463 | -0.09230769230769231 | -2.7272727272727275 | -1.3636363636363638 | 1 |
13 | 0.15 | -12.355397260273973 | 0 | 0.8504589041095889 | 17.512253424657533 | 0 | 0 | 0 | 0.21823972602739727 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11.641025641025642 | 0.06467236467236467 | 19.649650684931505 | 1.4173767994465287 | 0 | 0 | 0.06883298741385273 | 0.017663513477555147 | -0.06883298741385273 | 0.7607684069077459 | 2.137397260273972 | 0.8504589041095889 | 1 |
13a | 0.05 | -4.126984126984206 | 0.766501587301602 | 1.4646285714285996 | 4.251987301587382 | 1.6839682539682863 | 0 | 0 | 0.10475555555555754 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10.598290598290596 | 0.058879392212725534 | 8.157257142857299 | 1.0302892307692306 | 0.4080384615384616 | 0.18572923076923079 | 0.3548907692307693 | 0.02538307692307692 | -0.5406200000000001 | 0.8108376923076923 | 1.454800000000028 | 0.5471619047619154 | 0.24523979590384834 |
14 | 0.15 | -18.055555555555554 | 0 | 0.863472222222222 | 26.768694444444442 | 0 | 0 | 0 | 0.3272222222222222 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8.307692307692308 | 0.046153846153846156 | 29.15008333333333 | 1.4825738461538462 | 0 | 0 | 0.04782307692307691 | 0.018123076923076922 | -0.04782307692307691 | 0.7833215384615384 | 2.381388888888888 | 0.863472222222222 | 1 |
15 | 0.05 | -4.421768707482879 | 0.46373469387753913 | 1.4005714285713924 | 4.748027210884232 | 1.1987346938775203 | 0.01065306122448952 | 0.0548299319727877 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11.299145299145296 | 0.06277302943969609 | 8.089040816326325 | 1.0737846153846158 | 0.2710984615384616 | 0.10487538461538465 | 0.3167446153846154 | 0 | -0.42162000000000005 | 0.7539023076923078 | 1.657238095238052 | 0.6655714285714112 | 0.35700758612385186 |
16 | 0.05 | -4.744525547445547 | 0 | 1.7148102189782075 | 5.531832116788662 | 0 | 0.04459124087591516 | 0.036072992700732144 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 9.726495726495726 | 0.0540360873694207 | 9.086708029197638 | 1.1659400000000002 | 0 | 0 | 0.3614292307692308 | 0 | -0.3614292307692308 | 0.7674861538461539 | 3.465693430657147 | 1.7148102189782075 | 1 |
17 | 0.15 | -14.828897338402546 | 2.6066007604561863 | 7.4123269961974705 | 15.527543726235221 | 8.732828897338111 | 0.08009885931558669 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7.076923076923076 | 0.03931623931623931 | 33.11899619771752 | 1.047113846153846 | 0.5889061538461539 | 0.17577846153846152 | 0.49985692307692303 | 0 | -0.6756353846153845 | 0.8613746153846152 | 6.09182509505683 | 1.2860988593155458 | 0.12836691615641568 |
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Sample | Age | Date | Chemostat | Medium flow | Volume | Temperature | pH Chemostat | Dilution rate | %O2 input | Airflow | N2 flow | Total flow | Comments | |
Unit | 1 | hours | Date | name | ml/hour | ml | Celcius | 1 | 1/hour | volume% | ml/min | ml/min | ml/min | 1 |
1 | Tomas1 | 750 | 37 | 6.5 | 0.05 | 0 | 0 | 500 | 100 | wild-type | ||||
2 | Tomas1 | 750 | 37 | 6.5 | 0.15 | 0 | 0 | 500 | 100 | wild-type | ||||
3 | Tomas1 | 750 | 37 | 7.5 | 0.05 | 0 | 0 | 500 | 100 | wild-type | ||||
4 | Tomas1 | 750 | 37 | 7.5 | 0.15 | 0 | 0 | 500 | 100 | wild-type | ||||
5 | Tomas1 | 750 | 37 | 6.5 | 0.05 | 0 | 0 | 500 | 100 | Îldh | ||||
6 | Tomas1 | 750 | 37 | 6.5 | 0.15 | 0 | 0 | 500 | 100 | Îldh | ||||
7 | Tomas1 | 750 | 37 | 7.5 | 0.05 | 0 | 0 | 500 | 100 | Îldh | ||||
8 | Tomas1 | 750 | 37 | 7.5 | 0.15 | 0 | 0 | 500 | 100 | Îldh | ||||
9 | 144 | 2009-11-09T0:0:0+0000 | Sysmo1 | 50 | 1000 | 37 | 6.5 | 0.05 | 0 | 0 | 100 | 100 | wild-type | |
10 | 144 | 2009-11-13T0:0:0+0000 | Sysmo1 | 50 | 1000 | 37 | 7.5 | 0.05 | 0 | 0 | 100 | 100 | wild-type, way to high OD | |
11 | 144 | 25-01-2010 | Sysmo3 | 50 | 1000 | 37 | 7.5 | 0.05 | 0 | 0 | 100 | 100 | wild-type | |
11a | 168 | 26-01-2010 | Sysmo3 | 75 | 500 | 37 | 7.5 | 0.15 | 0 | 0 | 100 | 100 | wild-type | |
12 | 96 | 2010-03-04T0:0:0+0000 | SYSMO4 | 50 | 1000 | 37 | 7.5 | 0.05 | 0 | 0 | 100 | 100 | wild-type | |
13 | 96 | 2010-03-05T0:0:0+0000 | SYSMO4 | 150 | 1000 | 37 | 7.5 | 0.15 | 0 | 0 | 100 | 100 | wild-type | |
13a | 96 | 2010-03-06T0:0:0+0000 | SYSMO3 | 50 | 1000 | 37 | 7.5 | 0.05 | 0 | 0 | 100 | 100 | wild-type | |
14 | 96 | 2010-03-09T0:0:0+0000 | SYSMO4 | 150 | 1000 | 37 | 6.5 | 0.15 | 0 | 0 | 100 | 100 | wild-type | |
15 | 96 | 26-03-2010 | SYSMO3 | 50 | 1000 | 37 | 6.5 | 0.05 | 0 | 0 | 100 | 100 | wild-type | |
16 | 96 | 26-03-2010 | SYSMO4 | 50 | 1000 | 37 | 6.5 | 0.05 | 0 | 0 | 100 | 100 | wild-type | |
17 | 168 | 29-03-2010 | SYSMO4 | 150 | 1000 | 37 | 6.5 | 0.15 | 0 | 0 | 100 | 100 | wild-type | |
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Identifier | Sample | CO2 | O2 | CO2 | pH | RPM | OD | standard deviation OD | Dryweight correction calculated | Dry weight | Dry weight | standard deviation dryweight | |
Unit | volume% | volume% | volume% | 1 | rpm | AU | AU | gram/liter | gram/liter | gram/liter | |||
Description | Inputgas | Outputgas | Outputgas | stirring rate | Optical density (600nm) | Optical density (600nm) | Calculated | Dryweight measured as described in SOP X | |||||
1 | 400 | 2.55 | 0.47058823529411764 | 0.85 | 1.2 | ||||||||
2 | 400 | 2.36 | 0.2966101694915254 | 0.7866666666666666 | 0.7 | ||||||||
3 | 400 | 2.22 | 0.2927927927927928 | 0.7400000000000001 | 0.65 | ||||||||
4 | 400 | 2.1 | 0.47619047619047616 | 0.7000000000000001 | 1 | ||||||||
5 | 400 | 2.27 | 0.44052863436123346 | 0.7566666666666667 | 1 | ||||||||
6 | 400 | 2.94 | 0.4251700680272109 | 0.98 | 1.25 | ||||||||
7 | 400 | 1.65 | 0.393939393939394 | 0.5499999999999999 | 0.65 | ||||||||
8 | 400 | 2.43 | 0.43209876543209874 | 0.81 | 1.05 | ||||||||
9 | 0.01 | ND | ND | 6.3 | 400 | 2.275 | 0.10606601717796739 | 0.2923076923076923 | 0.7583333333333333 | 0.665 | 0.24748737341529123 | ||
10 | 0.01 | ND | ND | 7.41 | 400 | 5.4 | 0.14142135623729543 | 0.08333333333333333 | 1.8 | 0.45 | 0.08485281374238561 | ||
11 | 0.01 | ND | ND | 7.21 | 400 | 2.29 | 0.1697056274847673 | 0.25281544472535333 | 0.7633333333333333 | 0.5789473684210591 | 0.029772917102586262 | ||
11a | 0.01 | ND | ND | 7.44 | 400 | 2.555 | 0.10606601717799251 | 0.33268101761252444 | 0.8516666666666667 | 0.85 | 0.0742462120246034 | ||
12 | 0.01 | ND | ND | 7.51 | 400 | 1.31 | 0.15556349186103902 | 0.33587786259541985 | 0.4366666666666667 | 0.44 | 0.0742462120246034 | ||
13 | 0.01 | ND | ND | 7.32 | 100 | 2.27 | 0.09899494936611793 | 0.32158590308370044 | 0.7566666666666667 | 0.73 | |||
13a | 0.01 | ND | ND | ND | 100 | 2.0666666666666664 | 0.09073771725877823 | 0.38104838709676697 | 0.6888888888888888 | 0.787499999999985 | 0.18031222920258855 | ||
14 | 0.01 | ND | ND | 6.44 | 100 | 1.62 | 0.3676955262170038 | 0.3333333333333333 | 0.54 | 0.54 | |||
15 | 0.01 | ND | ND | 6.46 | 100 | 2.203333333333333 | 0.15567059238448272 | 0.7344444444444443 | 0.735000000000019 | 0.07778174593052666 | |||
16 | 0.01 | ND | ND | 6.57 | 100 | 1.8966666666666667 | 0.15044378795195365 | 0.6322222222222222 | 0.6849999999999579 | 0.014142135623761574 | |||
17 | 0.01 | ND | ND | 6.69 | 100 | 1.38 | 0.20223748416156723 | 0.45999999999999996 | 0.657500000000022 | 0.003535533905865814 | |||
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Identifier | Sample | Glucose | Ethanol | Acetate | Lactate | Formiate | Succinate | Pyruvate | Acetoin | 2,3 Butanediol | %O2 | CO2 | Aspartic acid | Serine | Glutamate | Glycine | Histidine | NH3 | Arginine | Threonine | Alanine | Proline | Cysteine | Tyrosine | Valine | Methionine | Ornithine | Lysine | Isoluecine | Leucine | Phenylalanine |
Unit | mM | mM | mM | mM | mM | mM | mM | mM | mM | % | % | mM | mM | mM | mM | mM | mM | mM | mM | mM | mM | mM | mM | mM | mM | ÎŒM | mM | mM | mM | mM | |
1 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
2 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
3 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
4 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
5 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
6 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
7 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
8 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
9 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||||||||
10 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||||||||
11 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||||||||
11a | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
12 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
13 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
13a | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
14 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
15 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
16 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
17 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
0 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
0 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
0 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
0 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
0 | 65 | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||