Assays

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SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

Short Name: 09_As1_tr_limmaDE-R Assay Class: DRY Assay Type: R Title: Assembly1 transcripts differential expression analysis using limma voom package Description: Using output files of mapReadsToAs1 generated by STAR, the counts were analyzed for differential expression in R using limma voom approach. Analyst: MPE Phenodata: ../../phenodata_20190523.txt Featuredata: Data: ../_A_08_mapReadsToAs1-STAR/output

Submitter: Marko Petek

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_T31_mealybug

Study: _S_P4_Pcitri_tr1

Organisms: No organisms

SOPs: No SOPs

Data files: _Assay_METADATA.TXT, output/PCA_PC1_top10genes.txt, output/PCA_PC2_top10genes.txt, output/P_citri_alldata_RNAseq_logFC_padj_TMMcpm..., output/P_citri_alldata_RNAseq_logFC_padj_TMMcpm..., output/Pcitri_tr1_counts_STAR_bothStr.txt

Snapshots: No snapshots

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:25

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