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| ###Cells are coloured only if the enrichment was significant (FDR<0.05). Green - downregulated, Red - upregulated. Included are all BINs that were enriched in at least one of | |||||||||
| ###the contrasts (high1-wt, high2-wt, low1-wt and low2-wt). | |||||||||
| Process | BINs | h1 | h2 | l1 | l2 | ||||
| PHOTOSYNTHESIS | 1 PS | ||||||||
| 1.1 PS.LIGHTREACTION | |||||||||
| 1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II | |||||||||
| 1.1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II.LHC-II | |||||||||
| 1.1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM II.PSII POLYPEPTIDE SUBUNITS | |||||||||
| 1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM I | |||||||||
| 1.1.2.1 PS.LIGHTREACTION.PHOTOSYSTEM I.LHC-I | |||||||||
| 1.1.2.2 PS.LIGHTREACTION.PHOTOSYSTEM I.PSI POLYPEPTIDE SUBUNITS | |||||||||
| 1.1.4 PS.LIGHTREACTION.ATP SYNTHASE | |||||||||
| 1.1.6 PS.LIGHTREACTION.NADH DH | |||||||||
| 1.2 PS.PHOTORESPIRATION | |||||||||
| 1.3 PS.CALVIN CYCLE | |||||||||
| 19 TETRAPYRROLE SYNTHESIS | |||||||||
| 29.3.3 PROTEIN.TARGETING.CHLOROPLAST | |||||||||
| CELL WALL | 10.5.1 CELL WALL.CELL WALL PROTEINS.AGPS | ||||||||
| 10.5.1.1 CELL WALL.CELL WALL PROTEINS.AGPS.AGP | |||||||||
| 10.6 CELL WALL.DEGRADATION | |||||||||
| 10.6.2 CELL WALL.DEGRADATION.MANNAN-XYLOSE-ARABINOSE-FUCOSE | |||||||||
| 26.18 MISC.INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN | |||||||||
| LIPID METABOLISM | 11.1.8 LIPID METABOLISM.FA SYNTHESIS AND FA ELONGATION.ACYL COA LIGASE | ||||||||
| 11.2 LIPID METABOLISM.FA DESATURATION | |||||||||
| 11.6 LIPID METABOLISM.LIPID TRANSFER PROTEINS ETC | |||||||||
| 11.9 LIPID METABOLISM.LIPID DEGRADATION | |||||||||
| 11.9.2 LIPID METABOLISM.LIPID DEGRADATION.LIPASES | |||||||||
| 11.9.2.1 LIPID METABOLISM.LIPID DEGRADATION.LIPASES.TRIACYLGLYCEROL LIPASE | |||||||||
| 11.9.4 LIPID METABOLISM.LIPID DEGRADATION.BETA-OXIDATION | |||||||||
| MAJOR CHO | 2.2 MAJOR CHO METABOLISM.DEGRADATION | ||||||||
| 2.2.1 MAJOR CHO METABOLISM.DEGRADATION.SUCROSE | |||||||||
| 2.2.2 MAJOR CHO METABOLISM.DEGRADATION.STARCH | |||||||||
| 2.2.2.1 MAJOR CHO METABOLISM.DEGRADATION.STARCH.STARCH CLEAVAGE | |||||||||
| MINOR CHO | 3 MINOR CHO METABOLISM | ||||||||
| 3.2 MINOR CHO METABOLISM.TREHALOSE | |||||||||
| ENERGY METABOLISM | 5 FERMENTATION | ||||||||
| 8 TCA / ORGANIC TRANSFORMATION | |||||||||
| 8.2 TCA / ORGANIC TRANSFORMATION.OTHER ORGANIC ACID TRANSFORMATIONS | |||||||||
| 9.1 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.NADH-DH (TYPE I) | |||||||||
| 29.3.2 PROTEIN.TARGETING.MITOCHONDRIA | |||||||||
| TRANSPORT | 34.2 TRANSPORT.SUGARS | ||||||||
| 34.3 TRANSPORT.AMINO ACIDS | |||||||||
| 34.4 TRANSPORT.NITRATE | |||||||||
| 34.10 TRANSPORT.NUCLEOTIDES | |||||||||
| 34.12 TRANSPORT.METAL | |||||||||
| 34.13 TRANSPORT.PEPTIDES AND OLIGOPEPTIDES | |||||||||
| 34.16 TRANSPORT.ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS | |||||||||
| 34.19.1 TRANSPORT.MAJOR INTRINSIC PROTEINS.PIP | |||||||||
| 34.22 TRANSPORT.CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS | |||||||||
| DEV | 33.1 DEVELOPMENT.STORAGE PROTEINS | ||||||||
| 33.3 DEVELOPMENT.SQUAMOSA PROMOTER BINDING LIKE (SPL) | |||||||||
| CELL CYCLE | 31.3 CELL.CYCLE | ||||||||
| 31.3.1 CELL.CYCLE.PEPTIDYLPROLYL ISOMERASE | |||||||||
| SIGNALLING | 29.4.1.57 PROTEIN.POSTRANSLATIONAL MODIFICATION.KINASE.RECEPTOR LIKE CYTOPLASMATIC KINASE VII | ||||||||
| 30.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY | |||||||||
| 30.1.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY.MISC | |||||||||
| 30.2.3 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT III | |||||||||
| 30.2.6 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT VI | |||||||||
| 30.2.19 SIGNALLING.RECEPTOR KINASES.LEGUME-LECTIN | |||||||||
| 30.2.24 SIGNALLING.RECEPTOR KINASES.S-LOCUS GLYCOPROTEIN LIKE | |||||||||
| 30.4.1 SIGNALLING.PHOSPHINOSITIDES.PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | |||||||||
| 30.6 SIGNALLING.MAP KINASES | |||||||||
| 30.11 SIGNALLING.LIGHT | |||||||||
| PROTEIN SYNTHESIS | 29.1 PROTEIN.AA ACTIVATION | ||||||||
| 29.2.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC | |||||||||
| 29.2.1.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST | |||||||||
| 29.2.1.1.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST.30S SUBUNIT | |||||||||
| 29.2.1.1.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST.50S SUBUNIT | |||||||||
| 29.2.1.1.3 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.UNKNOWN ORGANELLAR | |||||||||
| 29.2.1.1.3.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.UNKNOWN ORGANELLAR.50S SUBUNIT | |||||||||
| 29.2.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC | |||||||||
| 29.2.1.2.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC.40S SUBUNIT | |||||||||
| 29.2.1.2.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC.60S SUBUNIT | |||||||||
| 29.2.2 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS | |||||||||
| 29.2.2.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS | |||||||||
| 29.2.2.3.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS.METHYLOTRANSFERASES | |||||||||
| 29.6 PROTEIN.FOLDING | |||||||||
| 29.8 PROTEIN.ASSEMBLY AND COFACTOR LIGATION | |||||||||
| PROTEIN DEGRADATION | 29.5.2 PROTEIN.DEGRADATION.AUTOPHAGY | ||||||||
| 29.5.3 PROTEIN.DEGRADATION.CYSTEINE PROTEASE | |||||||||
| 29.5.9 PROTEIN.DEGRADATION.AAA TYPE | |||||||||
| 29.5.11.3 PROTEIN.DEGRADATION.UBIQUITIN.E2 | |||||||||
| 29.5.11.4.1 PROTEIN.DEGRADATION.UBIQUITIN.E3.HECT | |||||||||
| 29.5.11.4.3 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF | |||||||||
| 29.5.11.4.3.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF.FBOX | |||||||||
| 29.5.11.4.5 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3 | |||||||||
| 29.5.11.4.5.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3.BTB/POZ | |||||||||
| 29.5.11.20 PROTEIN.DEGRADATION.UBIQUITIN.PROTEASOM | |||||||||
| DNA SYNTHESIS | 28.1 DNA.SYNTHESIS/CHROMATIN STRUCTURE | ||||||||
| 28.1.1.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.RETROTRANSPOSON/TRANSPOSASE.HAT-LIKE TRANSPOSASE | |||||||||
| 28.1.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE | |||||||||
| 28.1.3.2 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE | |||||||||
| 28.1.3.2.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H3 | |||||||||
| 28.1.3.2.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H4 | |||||||||
| 23.1 NUCLEOTIDE METABOLISM.SYNTHESIS | |||||||||
| 23.4 NUCLEOTIDE METABOLISM.PHOSPHOTRANSFER AND PYROPHOSPHATASES | |||||||||
| TRANSCRIPTION FACTORS | 27.3.3 RNA.REGULATION OF TRANSCRIPTION.AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY | ||||||||
| 27.3.6 RNA.REGULATION OF TRANSCRIPTION.BASIC HELIX-LOOP-HELIX FAMILY (BHLH) | |||||||||
| 27.3.8 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) DOF ZINC FINGER FAMILY |
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| Process | BINs | h1 | h2 | l1 | l2 | ||||
| PHOTOSYNTHESIS | 1 PS | -0.71 | -0.72 | ||||||
| 1.1 PS.LIGHTREACTION | -0.67 | -0.69 | |||||||
| 1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II | -0.79 | -0.8 | |||||||
| 1.1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II.LHC-II | -0.89 | -0.92 | |||||||
| 1.1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM II.PSII POLYPEPTIDE SUBUNITS | -0.77 | -0.72 | |||||||
| 1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM I | -0.88 | -0.88 | |||||||
| 1.1.2.1 PS.LIGHTREACTION.PHOTOSYSTEM I.LHC-I | -1 | -1 | -0.85 | ||||||
| 1.1.2.2 PS.LIGHTREACTION.PHOTOSYSTEM I.PSI POLYPEPTIDE SUBUNITS | -0.85 | -0.85 | |||||||
| 1.1.4 PS.LIGHTREACTION.ATP SYNTHASE | -0.55 | -0.61 | |||||||
| 1.1.6 PS.LIGHTREACTION.NADH DH | -0.47 | -0.4 | |||||||
| 1.2 PS.PHOTORESPIRATION | -0.58 | -0.58 | |||||||
| 1.3 PS.CALVIN CYCLE | -0.81 | -0.8 | |||||||
| 19 TETRAPYRROLE SYNTHESIS | -0.7 | -0.67 | |||||||
| 29.3.3 PROTEIN.TARGETING.CHLOROPLAST | -0.68 | -0.63 | |||||||
| CELL WALL | 10.5.1 CELL WALL.CELL WALL PROTEINS.AGPS | -0.79 | |||||||
| 10.5.1.1 CELL WALL.CELL WALL PROTEINS.AGPS.AGP | -0.79 | ||||||||
| 10.6 CELL WALL.DEGRADATION | -0.41 | ||||||||
| 10.6.2 CELL WALL.DEGRADATION.MANNAN-XYLOSE-ARABINOSE-FUCOSE | -0.28 | ||||||||
| 26.18 MISC.INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN | -0.75 | -0.5 | -0.63 | ||||||
| LIPID METABOLISM | 11.1.8 LIPID METABOLISM.FA SYNTHESIS AND FA ELONGATION.ACYL COA LIGASE | 0.56 | 0.44 | ||||||
| 11.2 LIPID METABOLISM.FA DESATURATION | -0.53 | -0.4 | |||||||
| 11.6 LIPID METABOLISM.LIPID TRANSFER PROTEINS ETC | 0.5 | ||||||||
| 11.9 LIPID METABOLISM.LIPID DEGRADATION | 0.33 | ||||||||
| 11.9.2 LIPID METABOLISM.LIPID DEGRADATION.LIPASES | 0.35 | 0.42 | |||||||
| 11.9.2.1 LIPID METABOLISM.LIPID DEGRADATION.LIPASES.TRIACYLGLYCEROL LIPASE | 0.34 | 0.41 | |||||||
| 11.9.4 LIPID METABOLISM.LIPID DEGRADATION.BETA-OXIDATION | 0.6 | 0.5 | 0.33 | ||||||
| MAJOR CHO | 2.2 MAJOR CHO METABOLISM.DEGRADATION | 0.28 | |||||||
| 2.2.1 MAJOR CHO METABOLISM.DEGRADATION.SUCROSE | 0.34 | ||||||||
| 2.2.2 MAJOR CHO METABOLISM.DEGRADATION.STARCH | 0.33 | ||||||||
| 2.2.2.1 MAJOR CHO METABOLISM.DEGRADATION.STARCH.STARCH CLEAVAGE | 0.43 | ||||||||
| MINOR CHO | 3 MINOR CHO METABOLISM | 0.41 | |||||||
| 3.2 MINOR CHO METABOLISM.TREHALOSE | 0.63 | ||||||||
| ENERGY METABOLISM | 5 FERMENTATION | 0.5 | |||||||
| 8 TCA / ORGANIC TRANSFORMATION | -0.42 | ||||||||
| 8.2 TCA / ORGANIC TRANSFORMATION.OTHER ORGANIC ACID TRANSFORMATIONS | -0.75 | -0.64 | |||||||
| 9.1 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.NADH-DH (TYPE I) | -0.6 | ||||||||
| 29.3.2 PROTEIN.TARGETING.MITOCHONDRIA | -0.73 | ||||||||
| TRANSPORT | 34.2 TRANSPORT.SUGARS | 0.42 | |||||||
| 34.3 TRANSPORT.AMINO ACIDS | 0.4 | 0.35 | 0.3 | ||||||
| 34.4 TRANSPORT.NITRATE | 0.53 | 0.53 | 0.47 | ||||||
| 34.10 TRANSPORT.NUCLEOTIDES | 0.44 | ||||||||
| 34.12 TRANSPORT.METAL | 0.43 | 0.5 | |||||||
| 34.13 TRANSPORT.PEPTIDES AND OLIGOPEPTIDES | 0.37 | 0.35 | 0.35 | ||||||
| 34.16 TRANSPORT.ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS | 0.37 | ||||||||
| 34.19.1 TRANSPORT.MAJOR INTRINSIC PROTEINS.PIP | 0.45 | 0.59 | |||||||
| 34.22 TRANSPORT.CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS | 0.32 | 0.32 | |||||||
| DEV | 33.1 DEVELOPMENT.STORAGE PROTEINS | 0.44 | 0.5 | ||||||
| 33.3 DEVELOPMENT.SQUAMOSA PROMOTER BINDING LIKE (SPL) | 0.52 | ||||||||
| CELL CYCLE | 31.3 CELL.CYCLE | -0.22 | -0.21 | ||||||
| 31.3.1 CELL.CYCLE.PEPTIDYLPROLYL ISOMERASE | -0.53 | ||||||||
| SIGNALLING | 29.4.1.57 PROTEIN.POSTRANSLATIONAL MODIFICATION.KINASE.RECEPTOR LIKE CYTOPLASMATIC KINASE VII | 0.42 | 0.4 | ||||||
| 30.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY | 0.39 | 0.41 | |||||||
| 30.1.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY.MISC | 0.41 | 0.44 | |||||||
| 30.2.3 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT III | -0.53 | -0.4 | |||||||
| 30.2.6 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT VI | -0.53 | -0.44 | |||||||
| 30.2.19 SIGNALLING.RECEPTOR KINASES.LEGUME-LECTIN | 0.68 | 0.64 | |||||||
| 30.2.24 SIGNALLING.RECEPTOR KINASES.S-LOCUS GLYCOPROTEIN LIKE | 0.5 | ||||||||
| 30.4.1 SIGNALLING.PHOSPHINOSITIDES.PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | 0.64 | 0.73 | |||||||
| 30.6 SIGNALLING.MAP KINASES | 0.37 | 0.51 | |||||||
| 30.11 SIGNALLING.LIGHT | 0.42 | ||||||||
| PROTEIN SYNTHESIS | 29.1 PROTEIN.AA ACTIVATION | -0.41 | -0.59 | ||||||
| 29.2.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC | -0.51 | -0.57 | -0.63 | -0.77 | |||||
| 29.2.1.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST | -0.69 | -0.69 | -0.78 | ||||||
| 29.2.1.1.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST.30S SUBUNIT | -0.78 | -0.78 | -0.74 | ||||||
| 29.2.1.1.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST.50S SUBUNIT | -0.65 | -0.65 | -0.8 | ||||||
| 29.2.1.1.3 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.UNKNOWN ORGANELLAR | -0.7 | ||||||||
| 29.2.1.1.3.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.UNKNOWN ORGANELLAR.50S SUBUNIT | -0.88 | ||||||||
| 29.2.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC | -0.7 | -0.82 | -0.88 | ||||||
| 29.2.1.2.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC.40S SUBUNIT | -0.71 | -0.78 | -0.85 | ||||||
| 29.2.1.2.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC.60S SUBUNIT | -0.74 | -0.85 | -0.88 | ||||||
| 29.2.2 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS | -0.49 | -0.48 | |||||||
| 29.2.2.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS | -0.47 | -0.49 | |||||||
| 29.2.2.3.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS.METHYLOTRANSFERASES | -0.51 | ||||||||
| 29.6 PROTEIN.FOLDING | -0.35 | -0.53 | |||||||
| 29.8 PROTEIN.ASSEMBLY AND COFACTOR LIGATION | -0.61 | ||||||||
| PROTEIN DEGRADATION | 29.5.2 PROTEIN.DEGRADATION.AUTOPHAGY | 0.59 | 0.45 | 0.55 | |||||
| 29.5.3 PROTEIN.DEGRADATION.CYSTEINE PROTEASE | 0.48 | ||||||||
| 29.5.9 PROTEIN.DEGRADATION.AAA TYPE | 0.28 | ||||||||
| 29.5.11.3 PROTEIN.DEGRADATION.UBIQUITIN.E2 | -0.66 | ||||||||
| 29.5.11.4.1 PROTEIN.DEGRADATION.UBIQUITIN.E3.HECT | 0.8 | 0.93 | |||||||
| 29.5.11.4.3 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF | 0.57 | ||||||||
| 29.5.11.4.3.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF.FBOX | 0.56 | ||||||||
| 29.5.11.4.5 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3 | 0.57 | 0.43 | |||||||
| 29.5.11.4.5.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3.BTB/POZ | 0.53 | ||||||||
| 29.5.11.20 PROTEIN.DEGRADATION.UBIQUITIN.PROTEASOM | -0.45 | ||||||||
| DNA SYNTHESIS | 28.1 DNA.SYNTHESIS/CHROMATIN STRUCTURE | -0.36 | -0.3 | -0.36 | |||||
| 28.1.1.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.RETROTRANSPOSON/TRANSPOSASE.HAT-LIKE TRANSPOSASE | -0.37 | ||||||||
| 28.1.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE | -0.53 | -0.65 | -0.65 | ||||||
| 28.1.3.2 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE | -0.57 | -0.71 | -0.71 | ||||||
| 28.1.3.2.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H3 | -0.71 | -0.76 | -0.76 | ||||||
| 28.1.3.2.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H4 | -0.94 | -0.88 | -0.88 | ||||||
| 23.1 NUCLEOTIDE METABOLISM.SYNTHESIS | -0.58 | ||||||||
| 23.4 NUCLEOTIDE METABOLISM.PHOSPHOTRANSFER AND PYROPHOSPHATASES | -0.49 | ||||||||
| TRANSCRIPTION FACTORS | 27.3.3 RNA.REGULATION OF TRANSCRIPTION.AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY | 0.24 | 0.36 | ||||||
| 27.3.6 RNA.REGULATION OF TRANSCRIPTION.BASIC HELIX-LOOP-HELIX FAMILY (BHLH) | 0.48 | ||||||||
| 27.3.8 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) DOF ZINC FINGER FAMILY | 0.53 | 0.41 |
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| ###Cells are coloured in a darker shade if the enrichment was significant (FDR<0.05) and in a lighter shade otherwise. Green - downregulated, Red - upregulated. Included are all BINs that were enriched in at least one of | |||||||||||
| ###the contrasts (high1-wt, high2-wt, low1-wt and low2-wt). | |||||||||||
| Process | BINs | h1 | h2 | l1 | l2 | ||||||
| PHOTOSYNTHESIS | 1 PS | ||||||||||
| 1.1 PS.LIGHTREACTION | |||||||||||
| 1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II | |||||||||||
| 1.1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II.LHC-II | |||||||||||
| 1.1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM II.PSII POLYPEPTIDE SUBUNITS | |||||||||||
| 1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM I | |||||||||||
| 1.1.2.1 PS.LIGHTREACTION.PHOTOSYSTEM I.LHC-I | |||||||||||
| 1.1.2.2 PS.LIGHTREACTION.PHOTOSYSTEM I.PSI POLYPEPTIDE SUBUNITS | |||||||||||
| 1.1.4 PS.LIGHTREACTION.ATP SYNTHASE | |||||||||||
| 1.1.6 PS.LIGHTREACTION.NADH DH | |||||||||||
| 1.2 PS.PHOTORESPIRATION | |||||||||||
| 1.3 PS.CALVIN CYCLE | |||||||||||
| 19 TETRAPYRROLE SYNTHESIS | |||||||||||
| 29.3.3 PROTEIN.TARGETING.CHLOROPLAST | |||||||||||
| CELL WALL | 10.5.1 CELL WALL.CELL WALL PROTEINS.AGPS | ||||||||||
| 10.5.1.1 CELL WALL.CELL WALL PROTEINS.AGPS.AGP | |||||||||||
| 10.6 CELL WALL.DEGRADATION | |||||||||||
| 10.6.2 CELL WALL.DEGRADATION.MANNAN-XYLOSE-ARABINOSE-FUCOSE | |||||||||||
| 26.18 MISC.INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN | |||||||||||
| LIPID METABOLISM | 11.1.8 LIPID METABOLISM.FA SYNTHESIS AND FA ELONGATION.ACYL COA LIGASE | ||||||||||
| 11.2 LIPID METABOLISM.FA DESATURATION | |||||||||||
| 11.6 LIPID METABOLISM.LIPID TRANSFER PROTEINS ETC | |||||||||||
| 11.9 LIPID METABOLISM.LIPID DEGRADATION | |||||||||||
| 11.9.2 LIPID METABOLISM.LIPID DEGRADATION.LIPASES | |||||||||||
| 11.9.2.1 LIPID METABOLISM.LIPID DEGRADATION.LIPASES.TRIACYLGLYCEROL LIPASE | |||||||||||
| 11.9.4 LIPID METABOLISM.LIPID DEGRADATION.BETA-OXIDATION | |||||||||||
| MAJOR CHO | 2.2 MAJOR CHO METABOLISM.DEGRADATION | ||||||||||
| 2.2.1 MAJOR CHO METABOLISM.DEGRADATION.SUCROSE | |||||||||||
| 2.2.2 MAJOR CHO METABOLISM.DEGRADATION.STARCH | |||||||||||
| 2.2.2.1 MAJOR CHO METABOLISM.DEGRADATION.STARCH.STARCH CLEAVAGE | |||||||||||
| MINOR CHO | 3 MINOR CHO METABOLISM | ||||||||||
| 3.2 MINOR CHO METABOLISM.TREHALOSE | |||||||||||
| ENERGY METABOLISM | 5 FERMENTATION | ||||||||||
| 8 TCA / ORGANIC TRANSFORMATION | |||||||||||
| 8.2 TCA / ORGANIC TRANSFORMATION.OTHER ORGANIC ACID TRANSFORMATIONS | |||||||||||
| 9.1 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.NADH-DH (TYPE I) | |||||||||||
| 29.3.2 PROTEIN.TARGETING.MITOCHONDRIA | |||||||||||
| TRANSPORT | 34.2 TRANSPORT.SUGARS | ||||||||||
| 34.3 TRANSPORT.AMINO ACIDS | |||||||||||
| 34.4 TRANSPORT.NITRATE | |||||||||||
| 34.10 TRANSPORT.NUCLEOTIDES | |||||||||||
| 34.12 TRANSPORT.METAL | |||||||||||
| 34.13 TRANSPORT.PEPTIDES AND OLIGOPEPTIDES | |||||||||||
| 34.16 TRANSPORT.ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS | |||||||||||
| 34.19.1 TRANSPORT.MAJOR INTRINSIC PROTEINS.PIP | |||||||||||
| 34.22 TRANSPORT.CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS | |||||||||||
| DEV | 33.1 DEVELOPMENT.STORAGE PROTEINS | ||||||||||
| 33.3 DEVELOPMENT.SQUAMOSA PROMOTER BINDING LIKE (SPL) | |||||||||||
| CELL CYCLE | 31.3 CELL.CYCLE | ||||||||||
| 31.3.1 CELL.CYCLE.PEPTIDYLPROLYL ISOMERASE | |||||||||||
| SIGNALLING | 29.4.1.57 PROTEIN.POSTRANSLATIONAL MODIFICATION.KINASE.RECEPTOR LIKE CYTOPLASMATIC KINASE VII | ||||||||||
| 30.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY | |||||||||||
| 30.1.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY.MISC | |||||||||||
| 30.2.3 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT III | |||||||||||
| 30.2.6 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT VI | |||||||||||
| 30.2.19 SIGNALLING.RECEPTOR KINASES.LEGUME-LECTIN | |||||||||||
| 30.2.24 SIGNALLING.RECEPTOR KINASES.S-LOCUS GLYCOPROTEIN LIKE | |||||||||||
| 30.4.1 SIGNALLING.PHOSPHINOSITIDES.PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | |||||||||||
| 30.6 SIGNALLING.MAP KINASES | |||||||||||
| 30.11 SIGNALLING.LIGHT | |||||||||||
| PROTEIN SYNTHESIS | 29.1 PROTEIN.AA ACTIVATION | ||||||||||
| 29.2.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC | |||||||||||
| 29.2.1.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST | |||||||||||
| 29.2.1.1.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST.30S SUBUNIT | |||||||||||
| 29.2.1.1.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST.50S SUBUNIT | |||||||||||
| 29.2.1.1.3 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.UNKNOWN ORGANELLAR | |||||||||||
| 29.2.1.1.3.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.UNKNOWN ORGANELLAR.50S SUBUNIT | |||||||||||
| 29.2.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC | |||||||||||
| 29.2.1.2.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC.40S SUBUNIT | |||||||||||
| 29.2.1.2.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC.60S SUBUNIT | |||||||||||
| 29.2.2 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS | |||||||||||
| 29.2.2.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS | |||||||||||
| 29.2.2.3.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS.METHYLOTRANSFERASES | |||||||||||
| 29.6 PROTEIN.FOLDING | |||||||||||
| 29.8 PROTEIN.ASSEMBLY AND COFACTOR LIGATION | |||||||||||
| PROTEIN DEGRADATION | 29.5.2 PROTEIN.DEGRADATION.AUTOPHAGY | ||||||||||
| 29.5.3 PROTEIN.DEGRADATION.CYSTEINE PROTEASE | |||||||||||
| 29.5.9 PROTEIN.DEGRADATION.AAA TYPE | |||||||||||
| 29.5.11.3 PROTEIN.DEGRADATION.UBIQUITIN.E2 | |||||||||||
| 29.5.11.4.1 PROTEIN.DEGRADATION.UBIQUITIN.E3.HECT | |||||||||||
| 29.5.11.4.3 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF | |||||||||||
| 29.5.11.4.3.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF.FBOX | |||||||||||
| 29.5.11.4.5 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3 | |||||||||||
| 29.5.11.4.5.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3.BTB/POZ | |||||||||||
| 29.5.11.20 PROTEIN.DEGRADATION.UBIQUITIN.PROTEASOM | |||||||||||
| DNA SYNTHESIS | 28.1 DNA.SYNTHESIS/CHROMATIN STRUCTURE | ||||||||||
| 28.1.1.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.RETROTRANSPOSON/TRANSPOSASE.HAT-LIKE TRANSPOSASE | |||||||||||
| 28.1.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE | |||||||||||
| 28.1.3.2 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE | |||||||||||
| 28.1.3.2.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H3 | |||||||||||
| 28.1.3.2.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H4 | |||||||||||
| 23.1 NUCLEOTIDE METABOLISM.SYNTHESIS | |||||||||||
| 23.4 NUCLEOTIDE METABOLISM.PHOSPHOTRANSFER AND PYROPHOSPHATASES | |||||||||||
| TRANSCRIPTION FACTORS | 27.3.3 RNA.REGULATION OF TRANSCRIPTION.AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY | ||||||||||
| 27.3.6 RNA.REGULATION OF TRANSCRIPTION.BASIC HELIX-LOOP-HELIX FAMILY (BHLH) | |||||||||||
| 27.3.8 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) DOF ZINC FINGER FAMILY |
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| ###Cells are coloured according to the score (percent of genes contributing to the enrichment score). Green - downregulated, Red - upregulated. Percentage is given in bold if enrichment was significant (FDR<0.05). Included are all BINs that were enriched in at least one of | |||||||||
| ###the contrasts (high1-wt, high2-wt, low1-wt and low2-wt). | |||||||||
| Process | BINs | h1 | h2 | l1 | l2 | ||||
| PHOTOSYNTHESIS | 1 PS | -0.71 | -0.72 | -0.54 | -0.63 | ||||
| 1.1 PS.LIGHTREACTION | -0.67 | -0.69 | -0.53 | -0.65 | |||||
| 1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II | -0.79 | -0.8 | -0.53 | 0.05 | |||||
| 1.1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II.LHC-II | -0.89 | -0.92 | 0.11 | 0.08 | |||||
| 1.1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM II.PSII POLYPEPTIDE SUBUNITS | -0.77 | -0.72 | -0.7 | -0.72 | |||||
| 1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM I | -0.88 | -0.88 | -0.63 | -0.84 | |||||
| 1.1.2.1 PS.LIGHTREACTION.PHOTOSYSTEM I.LHC-I | -1 | -1 | -1 | -0.85 | |||||
| 1.1.2.2 PS.LIGHTREACTION.PHOTOSYSTEM I.PSI POLYPEPTIDE SUBUNITS | -0.85 | -0.85 | -0.74 | -0.85 | |||||
| 1.1.4 PS.LIGHTREACTION.ATP SYNTHASE | -0.55 | -0.61 | -0.09 | -0.15 | |||||
| 1.1.6 PS.LIGHTREACTION.NADH DH | -0.47 | -0.4 | -0.33 | -0.33 | |||||
| 1.2 PS.PHOTORESPIRATION | -0.58 | -0.58 | -0.68 | -0.5 | |||||
| 1.3 PS.CALVIN CYCLE | -0.81 | -0.8 | -0.52 | -0.73 | |||||
| 19 TETRAPYRROLE SYNTHESIS | -0.7 | -0.67 | 0.13 | -0.61 | |||||
| 29.3.3 PROTEIN.TARGETING.CHLOROPLAST | -0.68 | -0.63 | 0.16 | -0.47 | |||||
| CELL WALL | 10.5.1 CELL WALL.CELL WALL PROTEINS.AGPS | -0.79 | -0.26 | 0.58 | -0.79 | ||||
| 10.5.1.1 CELL WALL.CELL WALL PROTEINS.AGPS.AGP | -0.79 | -0.26 | 0.58 | -0.79 | |||||
| 10.6 CELL WALL.DEGRADATION | -0.41 | -0.28 | 0.32 | -0.14 | |||||
| 10.6.2 CELL WALL.DEGRADATION.MANNAN-XYLOSE-ARABINOSE-FUCOSE | -0.33 | -0.28 | -0.17 | -0.28 | |||||
| 26.18 MISC.INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN | -0.75 | -0.5 | -0.63 | -0.63 | |||||
| LIPID METABOLISM | 11.1.8 LIPID METABOLISM.FA SYNTHESIS AND FA ELONGATION.ACYL COA LIGASE | 0.56 | 0.44 | 0.22 | 0.33 | ||||
| 11.2 LIPID METABOLISM.FA DESATURATION | -0.53 | -0.4 | -1 | -0.6 | |||||
| 11.6 LIPID METABOLISM.LIPID TRANSFER PROTEINS ETC | 0.5 | 0.55 | 0.09 | 0.41 | |||||
| 11.9 LIPID METABOLISM.LIPID DEGRADATION | 0.39 | 0.33 | -0.21 | 0.35 | |||||
| 11.9.2 LIPID METABOLISM.LIPID DEGRADATION.LIPASES | 0.35 | 0.42 | -0.23 | 0.58 | |||||
| 11.9.2.1 LIPID METABOLISM.LIPID DEGRADATION.LIPASES.TRIACYLGLYCEROL LIPASE | 0.34 | 0.41 | -0.24 | 0.59 | |||||
| 11.9.4 LIPID METABOLISM.LIPID DEGRADATION.BETA-OXIDATION | 0.6 | 0.5 | 0.17 | 0.33 | |||||
| MAJOR CHO | 2.2 MAJOR CHO METABOLISM.DEGRADATION | 0.2 | 0.24 | 0.26 | 0.28 | ||||
| 2.2.1 MAJOR CHO METABOLISM.DEGRADATION.SUCROSE | 0.34 | 0.3 | -0.21 | 0.28 | |||||
| 2.2.2 MAJOR CHO METABOLISM.DEGRADATION.STARCH | 0.16 | 0.22 | 0.31 | 0.33 | |||||
| 2.2.2.1 MAJOR CHO METABOLISM.DEGRADATION.STARCH.STARCH CLEAVAGE | 0.24 | 0.43 | 0.38 | 0.43 | |||||
| MINOR CHO | 3 MINOR CHO METABOLISM | 0.25 | 0.23 | 0.34 | 0.41 | ||||
| 3.2 MINOR CHO METABOLISM.TREHALOSE | 0.21 | 0.29 | 0.5 | 0.63 | |||||
| ENERGY METABOLISM | 5 FERMENTATION | 0.38 | 0.5 | 0.13 | 0.38 | ||||
| 8 TCA / ORGANIC TRANSFORMATION | 0.25 | -0.22 | -0.41 | -0.42 | |||||
| 8.2 TCA / ORGANIC TRANSFORMATION.OTHER ORGANIC ACID TRANSFORMATIONS | -0.18 | -0.32 | -0.75 | -0.64 | |||||
| 9.1 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.NADH-DH (TYPE I) | 0.81 | -1 | -0.6 | -0.6 | |||||
| 29.3.2 PROTEIN.TARGETING.MITOCHONDRIA | 0.37 | -1 | -0.37 | -0.73 | |||||
| TRANSPORT | 34.2 TRANSPORT.SUGARS | 0.19 | 0.42 | 0.23 | 0.34 | ||||
| 34.3 TRANSPORT.AMINO ACIDS | 0.4 | 0.35 | 0.18 | 0.3 | |||||
| 34.4 TRANSPORT.NITRATE | 0.53 | 0.53 | 0.73 | 0.47 | |||||
| 34.10 TRANSPORT.NUCLEOTIDES | 0.44 | 0.25 | -0.31 | 0.44 | |||||
| 34.12 TRANSPORT.METAL | 0.43 | 0.35 | -0.13 | 0.5 | |||||
| 34.13 TRANSPORT.PEPTIDES AND OLIGOPEPTIDES | 0.37 | 0.35 | 0.11 | 0.35 | |||||
| 34.16 TRANSPORT.ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS | 0.17 | 0.26 | 0.49 | 0.37 | |||||
| 34.19.1 TRANSPORT.MAJOR INTRINSIC PROTEINS.PIP | 0.45 | 0.36 | 0.64 | 0.59 | |||||
| 34.22 TRANSPORT.CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS | 0.32 | 0.32 | 0.26 | 0.26 | |||||
| DEV | 33.1 DEVELOPMENT.STORAGE PROTEINS | 0.44 | 0.5 | -0.19 | 0.81 | ||||
| 33.3 DEVELOPMENT.SQUAMOSA PROMOTER BINDING LIKE (SPL) | 0.26 | 0.39 | 0.26 | 0.52 | |||||
| CELL CYCLE | 31.3 CELL.CYCLE | -0.17 | -0.22 | 0.21 | -0.21 | ||||
| 31.3.1 CELL.CYCLE.PEPTIDYLPROLYL ISOMERASE | -0.18 | -0.32 | -0.55 | -0.53 | |||||
| SIGNALLING | 29.4.1.57 PROTEIN.POSTRANSLATIONAL MODIFICATION.KINASE.RECEPTOR LIKE CYTOPLASMATIC KINASE VII | 0.42 | 0.4 | -0.33 | 0.21 | ||||
| 30.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY | 0.39 | 0.41 | 0.44 | 0.22 | |||||
| 30.1.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY.MISC | 0.41 | 0.44 | 0.46 | 0.23 | |||||
| 30.2.3 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT III | -0.53 | -0.4 | 0.71 | -0.38 | |||||
| 30.2.6 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT VI | -0.41 | -0.53 | 0.47 | -0.44 | |||||
| 30.2.19 SIGNALLING.RECEPTOR KINASES.LEGUME-LECTIN | 0.68 | 0.64 | 0.4 | 0.6 | |||||
| 30.2.24 SIGNALLING.RECEPTOR KINASES.S-LOCUS GLYCOPROTEIN LIKE | 0.42 | 0.5 | -0.19 | 0.69 | |||||
| 30.4.1 SIGNALLING.PHOSPHINOSITIDES.PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | 0.36 | 0.64 | 0.95 | 0.73 | |||||
| 30.6 SIGNALLING.MAP KINASES | 0.4 | 0.37 | 0.3 | 0.51 | |||||
| 30.11 SIGNALLING.LIGHT | 0.28 | 0.26 | 0.52 | 0.42 | |||||
| PROTEIN SYNTHESIS | 29.1 PROTEIN.AA ACTIVATION | -0.54 | -0.41 | 0.13 | -0.59 | ||||
| 29.2.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC | -0.51 | -0.57 | -0.63 | -0.77 | |||||
| 29.2.1.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST | -0.69 | -0.69 | -0.66 | -0.78 | |||||
| 29.2.1.1.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST.30S SUBUNIT | -0.78 | -0.78 | -0.56 | -0.74 | |||||
| 29.2.1.1.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST.50S SUBUNIT | -0.65 | -0.65 | -0.68 | -0.8 | |||||
| 29.2.1.1.3 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.UNKNOWN ORGANELLAR | -0.7 | -0.65 | -0.65 | -0.7 | |||||
| 29.2.1.1.3.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.UNKNOWN ORGANELLAR.50S SUBUNIT | -0.75 | -0.81 | -0.81 | -0.88 | |||||
| 29.2.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC | -0.7 | -0.82 | -0.46 | -0.88 | |||||
| 29.2.1.2.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC.40S SUBUNIT | -0.71 | -0.78 | -0.53 | -0.85 | |||||
| 29.2.1.2.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC.60S SUBUNIT | -0.74 | -0.85 | -0.45 | -0.88 | |||||
| 29.2.2 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS | -0.49 | -0.48 | 0.29 | -0.37 | |||||
| 29.2.2.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS | -0.47 | -0.49 | -0.13 | -0.39 | |||||
| 29.2.2.3.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS.METHYLOTRANSFERASES | -0.51 | -0.47 | -0.16 | -0.27 | |||||
| 29.6 PROTEIN.FOLDING | -0.35 | -0.35 | 0.16 | -0.53 | |||||
| 29.8 PROTEIN.ASSEMBLY AND COFACTOR LIGATION | -0.36 | -0.61 | -0.25 | -0.33 | |||||
| PROTEIN DEGRADATION | 29.5.2 PROTEIN.DEGRADATION.AUTOPHAGY | 0.59 | 0.45 | 0.36 | 0.55 | ||||
| 29.5.3 PROTEIN.DEGRADATION.CYSTEINE PROTEASE | 0.48 | 0.33 | -0.17 | 0.35 | |||||
| 29.5.9 PROTEIN.DEGRADATION.AAA TYPE | 0.24 | 0.28 | -0.2 | 0.04 | |||||
| 29.5.11.3 PROTEIN.DEGRADATION.UBIQUITIN.E2 | 0.66 | 0.17 | -0.66 | -0.43 | |||||
| 29.5.11.4.1 PROTEIN.DEGRADATION.UBIQUITIN.E3.HECT | 0.47 | 0.93 | 0.8 | 0.93 | |||||
| 29.5.11.4.3 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF | 0.34 | 0.3 | 0.37 | 0.57 | |||||
| 29.5.11.4.3.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF.FBOX | 0.36 | 0.19 | 0.39 | 0.56 | |||||
| 29.5.11.4.5 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3 | 0.57 | 0.43 | -0.17 | 0.43 | |||||
| 29.5.11.4.5.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3.BTB/POZ | 0.53 | 0.41 | -0.18 | 0.53 | |||||
| 29.5.11.20 PROTEIN.DEGRADATION.UBIQUITIN.PROTEASOM | 0.59 | 0.29 | -0.5 | -0.45 | |||||
| DNA SYNTHESIS | 28.1 DNA.SYNTHESIS/CHROMATIN STRUCTURE | -0.36 | -0.3 | 0.28 | -0.36 | ||||
| 28.1.1.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.RETROTRANSPOSON/TRANSPOSASE.HAT-LIKE TRANSPOSASE | -0.25 | -0.27 | -0.48 | -0.37 | |||||
| 28.1.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE | -0.53 | -0.65 | 0.98 | -0.65 | |||||
| 28.1.3.2 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE | -0.57 | -0.71 | 0.35 | -0.71 | |||||
| 28.1.3.2.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H3 | -0.71 | -0.76 | 0.38 | -0.76 | |||||
| 28.1.3.2.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H4 | -0.94 | -0.88 | 0.5 | -0.88 | |||||
| 23.1 NUCLEOTIDE METABOLISM.SYNTHESIS | -0.68 | -0.68 | 0.39 | -0.58 | |||||
| 23.4 NUCLEOTIDE METABOLISM.PHOSPHOTRANSFER AND PYROPHOSPHATASES | -0.37 | -0.29 | -0.45 | -0.49 | |||||
| TRANSCRIPTION FACTORS | 27.3.3 RNA.REGULATION OF TRANSCRIPTION.AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY | 0.4 | 0.24 | 0.26 | 0.36 | ||||
| 27.3.6 RNA.REGULATION OF TRANSCRIPTION.BASIC HELIX-LOOP-HELIX FAMILY (BHLH) | 0.3 | 0.38 | 0.41 | 0.48 | |||||
| 27.3.8 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) DOF ZINC FINGER FAMILY | 0.53 | 0.41 | 0.38 | 0.28 |
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| ###I have collapsed all subBINs if there were some and if they showed same up- or downregulation trend | komentarji ŠB | ||||||||||
| šele zdaj opazila: profili so povezani feromoni, ne a z rastlo. Low 2 so večje do low1 | |||||||||||
| ali bi lahko bil tukaj ključ, kaj L2 dela bolje? | |||||||||||
| Process | BINs | h1 | h2 | l1 | l2 | ||||||
| PHOTOSYNTHESIS | 1 PS | fotosinteza blokirana zaradi povečane biosinteze feromonov | |||||||||
| 19 TETRAPYRROLE SYNTHESIS | |||||||||||
| 29.3.3 PROTEIN.TARGETING.CHLOROPLAST | |||||||||||
| CELL WALL | 10.5.1 CELL WALL.CELL WALL PROTEINS.AGPS | ? | |||||||||
| 10.6 CELL WALL.DEGRADATION | |||||||||||
| 26.18 MISC.INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN | |||||||||||
| LIPID METABOLISM | 11.1.8 LIPID METABOLISM.FA SYNTHESIS AND FA ELONGATION.ACYL COA LIGASE | metabolizem lipdov kot začetek biosinteze | |||||||||
| 11.2 LIPID METABOLISM.FA DESATURATION | |||||||||||
| 11.6 LIPID METABOLISM.LIPID TRANSFER PROTEINS ETC | |||||||||||
| 11.9 LIPID METABOLISM.LIPID DEGRADATION | |||||||||||
| MAJOR CHO | 2.2 MAJOR CHO METABOLISM.DEGRADATION | l2 bolje razgrajuje cho zato bolje raste | |||||||||
| MINOR CHO | 3 MINOR CHO METABOLISM | ||||||||||
| ENERGY METABOLISM | 5 FERMENTATION | ||||||||||
| 8 TCA / ORGANIC TRANSFORMATION | L2 ima ustavljen energetski metabolizem, zato bolje raste? | ||||||||||
| 9.1 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.NADH-DH (TYPE I) | |||||||||||
| 29.3.2 PROTEIN.TARGETING.MITOCHONDRIA | |||||||||||
| TRANSPORT | 34.2 TRANSPORT.SUGARS | povečana sinteza - povean transport … kar vsega? | |||||||||
| 34.3 TRANSPORT.AMINO ACIDS | |||||||||||
| 34.4 TRANSPORT.NITRATE | |||||||||||
| 34.10 TRANSPORT.NUCLEOTIDES | |||||||||||
| 34.12 TRANSPORT.METAL | |||||||||||
| 34.13 TRANSPORT.PEPTIDES AND OLIGOPEPTIDES | |||||||||||
| 34.16 TRANSPORT.ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS | |||||||||||
| 34.19.1 TRANSPORT.MAJOR INTRINSIC PROTEINS.PIP | |||||||||||
| 34.22 TRANSPORT.CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS | |||||||||||
| DEVELOPMENT | 33.1 DEVELOPMENT.STORAGE PROTEINS | ||||||||||
| 33.3 DEVELOPMENT.SQUAMOSA PROMOTER BINDING LIKE (SPL) | |||||||||||
| CELL CYCLE | 31.3 CELL.CYCLE | ||||||||||
| SIGNALLING | 29.4.1.57 PROTEIN.POSTRANSLATIONAL MODIFICATION.KINASE.RECEPTOR LIKE CYTOPLASMATIC KINASE VII | spremenjena signalizacija zaradi spremenjenega metabolizma | |||||||||
| 30.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY | |||||||||||
| 30.2.3 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT III | |||||||||||
| 30.2.6 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT VI | |||||||||||
| 30.2.19 SIGNALLING.RECEPTOR KINASES.LEGUME-LECTIN | |||||||||||
| 30.2.24 SIGNALLING.RECEPTOR KINASES.S-LOCUS GLYCOPROTEIN LIKE | |||||||||||
| 30.4.1 SIGNALLING.PHOSPHINOSITIDES.PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | |||||||||||
| 30.6 SIGNALLING.MAP KINASES | |||||||||||
| 30.11 SIGNALLING.LIGHT | |||||||||||
| PROTEIN SYNTHESIS | 29.1 PROTEIN.AA ACTIVATION | zavrta sinteza proteinov zaradi povečane sinteze feromonov. Ni čisto logično | |||||||||
| 29.2.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC | |||||||||||
| 29.2.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC | |||||||||||
| 29.2.2 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS | |||||||||||
| 29.6 PROTEIN.FOLDING | |||||||||||
| 29.8 PROTEIN.ASSEMBLY AND COFACTOR LIGATION | |||||||||||
| PROTEIN DEGRADATION | 29.5.2 PROTEIN.DEGRADATION.AUTOPHAGY | razgradnja proteinov kot vir gradnikov za sintezo | |||||||||
| 29.5.3 PROTEIN.DEGRADATION.CYSTEINE PROTEASE | |||||||||||
| 29.5.9 PROTEIN.DEGRADATION.AAA TYPE | |||||||||||
| 29.5.11.3 PROTEIN.DEGRADATION.UBIQUITIN.E2 | |||||||||||
| 29.5.11.4.1 PROTEIN.DEGRADATION.UBIQUITIN.E3.HECT | ubikvitnacija močnejša v L2 - kaže na neke procese, ki potekajo v L2, da raste bolje kot L1 kljub več feromonov | ||||||||||
| 29.5.11.4.3 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF | |||||||||||
| 29.5.11.4.3.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF.FBOX | |||||||||||
| 29.5.11.4.5 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3 | |||||||||||
| 29.5.11.4.5.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3.BTB/POZ | |||||||||||
| 29.5.11.20 PROTEIN.DEGRADATION.UBIQUITIN.PROTEASOM | |||||||||||
| DNA SYNTHESIS | 28.1 DNA.SYNTHESIS/CHROMATIN STRUCTURE | ||||||||||
| 23.1 NUCLEOTIDE METABOLISM.SYNTHESIS | |||||||||||
| 23.4 NUCLEOTIDE METABOLISM.PHOSPHOTRANSFER AND PYROPHOSPHATASES | |||||||||||
| TRANSCRIPTION FACTORS | 27.3.3 RNA.REGULATION OF TRANSCRIPTION.AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY | ||||||||||
| 27.3.6 RNA.REGULATION OF TRANSCRIPTION.BASIC HELIX-LOOP-HELIX FAMILY (BHLH) | |||||||||||
| 27.3.8 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) DOF ZINC FINGER FAMILY | |||||||||||
| 27.3.12 RNA.REGULATION OF TRANSCRIPTION.C3H ZINC FINGER FAMILY | |||||||||||
| 27.3.22 RNA.REGULATION OF TRANSCRIPTION.HOMEOBOX TRANSCRIPTION FACTOR FAMILY (HB) | |||||||||||
| 27.3.25 RNA.REGULATION OF TRANSCRIPTION.MYB DOMAIN TRANSCRIPTION FACTOR FAMILY | |||||||||||
| 27.3.27 RNA.REGULATION OF TRANSCRIPTION.NAC DOMAIN TRANSCRIPTION FACTOR FAMILY | |||||||||||
| 27.3.32 RNA.REGULATION OF TRANSCRIPTION.WRKY DOMAIN TRANSCRIPTION FACTOR FAMILY | |||||||||||
| 27.3.35 RNA.REGULATION OF TRANSCRIPTION.BZIP TRANSCRIPTION FACTOR FAMILY | |||||||||||
| 27.3.40 RNA.REGULATION OF TRANSCRIPTION.AUX/IAA FAMILY | |||||||||||
| 27.3.57 RNA.REGULATION OF TRANSCRIPTION.JUMONJI FAMILY | |||||||||||
| 27.3.63 RNA.REGULATION OF TRANSCRIPTION.PHD FINGER TRANSCRIPTION FACTOR | |||||||||||
| 27.3.69 RNA.REGULATION OF TRANSCRIPTION.SET-DOMAIN TRANSCRIPTIONAL REGULATOR FAMILY | |||||||||||
| AA DEGRADATION | 13.2 AMINO ACID METABOLISM.DEGRADATION | Ak kot vir gradnikov | |||||||||
| SECONDARY METABOLISM | 16 SECONDARY METABOLISM | stress response. Očitno povezan s sintezo ne pa rastjo | |||||||||
| HORMONE METABOLISM | 17 HORMONE METABOLISM | od tukaj pogledam še podrobno (sheet 1(2)) | |||||||||
| STRESS | 20.1.2.2 STRESS.BIOTIC.RECEPTORS.TIR-NBS-LRR | ||||||||||
| 20.1.7 STRESS.BIOTIC.PR-PROTEINS | |||||||||||
| REDOX | 21.2.1 REDOX.ASCORBATE AND GLUTATHIONE.ASCORBATE | ||||||||||
| 21.4 REDOX.GLUTAREDOXINS | |||||||||||
| MISC | 26.10 MISC.CYTOCHROME P450 | ||||||||||
| 26.9 MISC.GLUTATHIONE S TRANSFERASES | |||||||||||
| 26.3 MISC.GLUCO-, GALACTO- AND MANNOSIDASES | |||||||||||
| 26.4 MISC.BETA 1,3 GLUCAN HYDROLASES | |||||||||||
| 26.4.1 MISC.BETA 1,3 GLUCAN HYDROLASES.GLUCAN ENDO-1,3-BETA-GLUCOSIDASE | |||||||||||
| 26.2 MISC.UDP GLUCOSYL AND GLUCORONYL TRANSFERASES | |||||||||||
| 26.8 MISC.NITRILASES, NITRILE LYASES, BERBERINE BRIDGE ENZYMES, RETICULINE OXIDASES, TROPONINE REDUCTASES |
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| Process | low-wt | high-wt | Process | low-wt | high-wt | ||||
| PHOTOSYNTHESIS | PROTEIN SYNTHESIS | ||||||||
| CELL WALL | |||||||||
| LIPID METABOLISM | PROTEIN DEGRADATION | ||||||||
| MAJOR CHO | |||||||||
| MINOR CHO | |||||||||
| ENERGY METABOLISM | |||||||||
| TRANSPORT | DNA SYNTHESIS | ||||||||
| TRANSCRIPTION FACTORS | |||||||||
| DEVELOPMENT | |||||||||
| CELL CYCLE | |||||||||
| SIGNALLING | |||||||||
| AA DEGRADATION | |||||||||
| SECONDARY METABOLISM | |||||||||
| HORMONE METABOLISM | |||||||||
| STRESS | |||||||||
| PROTEIN SYNTHESIS | REDOX | ||||||||
| PROTEIN DEGRADATION | |||||||||
| DNA SYNTHESIS | |||||||||
| TRANSCRIPTION FACTORS | |||||||||
| AA DEGRADATION | |||||||||
| SECONDARY METABOLISM | |||||||||
| HORMONE METABOLISM | |||||||||
| STRESS | |||||||||
| REDOX | |||||||||
| MISC | |||||||||
