Selected Cell
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| Gene_name | Gene_ID | 2min/0min | 5min/0min | 10min/0min | 15min/0min | 20min/0min | Description | ||
| b0031 | dapB | 0.47 | 0.44 | dihydrodipicolinate reductase | |||||
| b0032 | carA | 3.1 | 3.13 | carbamoyl phosphate synthetase small subunit - glutamine amidotransferase | |||||
| b0033 | carB | 2.44 | 3.47 | 4.56 | carbamoyl-phosphate synthase large subunit | ||||
| b0034 | caiF | 0.47 | 0.26 | 0.28 | 0.26 | 0.3 | DNA-binding transcriptional activator | ||
| b0046 | kefF | 2.29 | 2.43 | flavoprotein subunit for the KefC potassium efflux system | |||||
| b0114 | aceE | 7.16 | 6.3 | 5.16 | 5.8 | pyruvate dehydrogenase - decarboxylase component E1 - thiamin-binding | |||
| b0115 | aceF | 5.1 | 4.98 | 4.77 | 5.19 | pyruvate dehydrogenase - dihydrolipoyltransacetylase component E2 | |||
| b0116 | lpd | 4.03 | 4.01 | 3.96 | 4.53 | lipoamide dehydrogenase - E3 component is part of three enzyme complexes | |||
| b0118 | acnB | 4.12 | 3.36 | 3.54 | 2.85 | bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase | |||
| b0124 | gcd | 2.56 | 3.52 | 3.76 | 5.7 | glucose dehydrogenase | |||
| b0126 | can | 2.25 | 2.15 | 2.61 | 2.92 | carbonic anhydrase | |||
| b0150 | fhuA | 3.37 | 3.37 | 3.31 | 4.07 | ferrichrome outer membrane transporter | |||
| b0151 | fhuC | 2.44 | 2.09 | 3.04 | 2.93 | iron-hydroxamate transporter subunit ; ATP-binding component of ABC superfamily | |||
| b0168 | map | 2.13 | methionine aminopeptidase | ||||||
| b0197 | metQ | 2.04 | DL-methionine transporter subunit ; periplasmic-binding component of ABC superfamily | ||||||
| b0199 | metN | 2.68 | DL-methionine transporter subunit ; ATP-binding component of ABC superfamily | ||||||
| b0210 | yafE | 0.45 | predicted S-adenosyl-L-methionine-dependent methyltransferase | ||||||
| b0221 | fadE | 2.31 | 2.31 | 2.05 | acyl coenzyme A dehydrogenase | ||||
| b0240 | crl | 2.63 | 3.19 | 2.56 | 2.75 | 2.55 | DNA-binding transcriptional regulator | ||
| b0260 | mmuP | 4.17 | CP4-6 prophage; predicted S-methylmethionine transporter | ||||||
| b0261 | mmuM | 3.32 | CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase | ||||||
| b0269 | yagF | 2.01 | CP4-6 prophage; predicted dehydratase | ||||||
| b0272 | yagI | 2.08 | 2.99 | 3.87 | CP4-6 prophage; predicted DNA-binding transcriptional regulator | ||||
| b0273 | argF | 2.46 | 3.95 | 5.61 | CP4-6 prophage; ornithine carbamoyltransferase 2 - chain F | ||||
| b0287 | yagU | 2.09 | 2.18 | conserved inner membrane protein | |||||
| b0311 | betA | 3.79 | 3.34 | 2.99 | 2.72 | choline dehydrogenase - a flavoprotein | |||
| b0312 | betB | 6.29 | 5.22 | 4.9 | 4.16 | betaine aldehyde dehydrogenase - NAD-dependent | |||
| b0313 | betI | 3.4 | 7.35 | 6.25 | 5.18 | 4.02 | DNA-binding transcriptional repressor | ||
| b0314 | betT | 3.33 | 2.56 | 2.65 | 2.57 | choline transporter of high affinity | |||
| b0319 | yahE | 2 | 2.25 | predicted protein | |||||
| b0337 | codA | 2.17 | cytosine deaminase | ||||||
| b0352 | mhpE | 0.45 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase - class I | ||||||
| b0365 | tauA | 2.36 | taurine transporter subunit ; periplasmic-binding component of ABC superfamily | ||||||
| b0366 | tauB | 2.18 | 2.26 | 2.2 | taurine transporter subunit ; ATP-binding component of ABC superfamily | ||||
| b0392 | ykiA | 0.29 | 0.24 | 0.25 | 0.22 | predicted protein | |||
| b0404 | yajB | 2.01 | conserved protein | ||||||
| b0428 | cyoE | 6.6 | 8.6 | 8.1 | 8.92 | protoheme IX farnesyltransferase | |||
| b0429 | cyoD | 19.35 | 19.06 | 18.81 | 19.95 | cytochrome o ubiquinol oxidase subunit IV | |||
| b0430 | cyoC | 19.63 | 16.16 | 19.31 | 17.72 | cytochrome o ubiquinol oxidase subunit III | |||
| b0431 | cyoB | 17.1 | 17.88 | 15.86 | 15.16 | cytochrome o ubiquinol oxidase subunit I | |||
| b0432 | cyoA | 5.32 | 17.37 | 15.28 | 17.52 | 16.99 | cytochrome o ubiquinol oxidase subunit II | ||
| b0453 | ybaY | 3.53 | 3.63 | 4.02 | 3.4 | predicted outer membrane lipoprotein | |||
| b0458 | ylaC | 2.52 | 2.19 | 2.34 | 2.38 | predicted inner membrane protein | |||
| b0459 | maa | 0.38 | 0.41 | 0.4 | 0.36 | maltose O-acetyltransferase | |||
| b0468 | ybaN | 2.17 | conserved inner membrane protein | ||||||
| b0484 | copA | 0.45 | 0.33 | 0.29 | 0.33 | copper transporter | |||
| b0553 | nmpC | 0.43 | 0.13 | 0.2 | 0.14 | DLP12 prophage; truncated outer membrane porin (pseudogene) | |||
| b0570 | cusS | 0.35 | 0.36 | 0.28 | 0.27 | sensory histidine kinase in two-component regulatory system with CusR - senses copper ions | |||
| b0571 | cusR | 0.35 | 0.26 | 0.25 | 0.27 | 0.25 | DNA-binding response regulator in two-component regulatory system with CusS | ||
| b0572 | cusC | 0.31 | 0.09 | 0.06 | 0.06 | 0.06 | copper/silver efflux system - outer membrane component | ||
| b0573 | cusF | 0.23 | 0.08 | 0.06 | 0.06 | periplasmic copper-binding protein | |||
| b0574 | cusB | 0.1 | 0.07 | 0.08 | 0.08 | copper/silver efflux system - membrane fusion protein | |||
| b0575 | cusA | 0.35 | 0.25 | 0.21 | 0.25 | copper/silver efflux system - membrane component | |||
| b0584 | fepA | 3 | 4.16 | 4.41 | 5.2 | iron-enterobactin outer membrane transporter | |||
| b0585 | fes | 2.08 | 2.21 | 2.47 | 2.63 | enterobactin/ferric enterobactin esterase | |||
| b0586 | entF | 2.1 | 2.37 | 2.54 | enterobactin synthase multienzyme complex component - ATP-dependent | ||||
| b0590 | fepD | 2.21 | 2.05 | 2.47 | 2.5 | iron-enterobactin transporter subunit ; membrane component of ABC superfamily | |||
| b0591 | ybdA | 2.1 | 2.35 | 2.72 | predicted transporter | ||||
| b0594 | entE | 7.14 | 7.62 | 10.39 | 11.17 | 2 -3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex | |||
| b0595 | entB | 3 | 5.46 | 6.63 | 7.47 | isochorismatase | |||
| b0596 | entA | 3.04 | 6.3 | 7.72 | 8.61 | 2 -3-dihydro-2 -3-dihydroxybenzoate dehydrogenase | |||
| b0597 | ybdB | 5.48 | 6.41 | 7.42 | conserved protein | ||||
| b0599 | ybdH | 3.57 | predicted oxidoreductase | ||||||
| b0600 | ybdL | 2.9 | methionine aminotransferase - PLP-dependent | ||||||
| b0605 | ahpC | 2.19 | 4.17 | 3.65 | 2.61 | 2.89 | alkyl hydroperoxide reductase - C22 subunit | ||
| b0606 | ahpF | 2.82 | alkyl hydroperoxide reductase - F52a subunit - FAD/NAD(P)-binding | ||||||
| b0621 | dcuC | 0.35 | 0.33 | 0.33 | 0.29 | anaerobic C4-dicarboxylate transport | |||
| b0628 | lipA | 2.04 | 2.08 | 2.49 | lipoate synthase | ||||
| b0651 | rihA | 0.5 | 0.4 | 0.44 | 0.37 | ribonucleoside hydrolase 1 | |||
| b0684 | fldA | 2.12 | flavodoxin 1 | ||||||
| b0693 | speF | 2.28 | ornithine decarboxylase isozyme - inducible | ||||||
| b0721 | sdhC | 5.09 | 9.55 | 5.32 | 4.83 | 3.28 | succinate dehydrogenase - membrane subunit - binds cytochrome b556 | ||
| b0722 | sdhD | 4.4 | 8.46 | 4.4 | 5.54 | 2.65 | succinate dehydrogenase - membrane subunit - binds cytochrome b556 | ||
| b0723 | sdhA | 8.63 | 4.53 | 3.75 | 3.01 | succinate dehydrogenase - flavoprotein subunit | |||
| b0724 | sdhB | 8.35 | 5.78 | 3.89 | 2.84 | succinate dehydrogenase - FeS subunit | |||
| b0725 | b0725 | 3.99 | 2.52 | 2.11 | 2.06 | "FALSE ANNOTATION (Riley2005) - """"orf - hypothetical protein""""" | |||
| b0726 | sucA | 3.31 | 3.41 | 3.52 | 2.74 | 2-oxoglutarate decarboxylase - thiamin-requiring | |||
| b0727 | sucB | 3.46 | 3.18 | 2.4 | dihydrolipoyltranssuccinase | ||||
| b0728 | sucC | 3.97 | 3.19 | 2.43 | succinyl-CoA synthetase - beta subunit | ||||
| b0750 | nadA | 0.42 | quinolinate synthase - subunit A | ||||||
| b0751 | pnuC | 0.43 | predicted nicotinamide mononucleotide transporter | ||||||
| b0755 | gpmA | 2.35 | 2.87 | 3.06 | 2.2 | phosphoglyceromutase 1 | |||
| b0774 | bioA | 2.32 | 2.51 | 7 -8-diaminopelargonic acid synthase - PLP-dependent | |||||
| b0775 | bioB | 2 | 2.25 | biotin synthase | |||||
| b0776 | bioF | 2.11 | 2.76 | 8-amino-7-oxononanoate synthase | |||||
| b0777 | bioC | 2.79 | predicted methltransferase - enzyme of biotin synthesis | ||||||
| b0782 | moaB | 0.45 | molybdopterin biosynthesis protein B | ||||||
| b0790 | ybhP | 2.04 | 1.94 | predicted DNase | |||||
| b0804 | ybiX | 1.99 | 2.01 | conserved protein | |||||
| b0814 | ompX | 2.94 | outer membrane protein | ||||||
| b0836 | yliH | 0.33 | 0.21 | conserved protein | |||||
| b0849 | grxA | 4.76 | 5.75 | 3.19 | 2.68 | 2.65 | glutaredoxin 1 - redox coenzyme for ribonucleotide reductase (RNR1a) | ||
| b0850 | ybjC | 1.98 | 2.48 | predicted inner membrane protein | |||||
| b0855 | potG | 2.53 | 2.42 | 2 | putrescine transporter subunit: ATP-binding component of ABC superfamily | ||||
| b0871 | poxB | 2.18 | 2.79 | 3.24 | pyruvate dehydrogenase (pyruvate oxidase) - thiamin-dependent - FAD-binding | ||||
| b0880 | cspD | 0.36 | 0.33 | 0.39 | cold shock protein homolog | ||||
| b0895 | dmsB | 0.4 | 0.23 | 0.21 | 0.22 | dimethyl sulfoxide reductase - anaerobic - subunit B | |||
| b0896 | dmsC | 0.44 | 0.44 | 0.46 | dimethyl sulfoxide reductase - anaerobic - subunit C | ||||
| b0897 | ycaC | 2.3 | predicted hydrolase | ||||||
| b0903 | pflB | 0.46 | 0.4 | 0.37 | 0.44 | pyruvate formate lyase I | |||
| b0904 | focA | 0.39 | 0.25 | 0.29 | 0.26 | formate transporter | |||
| b0919 | ycbJ | 0.41 | 0.37 | 0.38 | conserved protein | ||||
| b0929 | ompF | 0.41 | 0.33 | outer membrane porin 1a (Ia;b;F) | |||||
| b0932 | pepN | 2.04 | aminopeptidase N | ||||||
| b0972 | hyaA | 0.2 | 0.12 | 0.09 | hydrogenase 1 - small subunit | ||||
| b0973 | hyaB | 0.25 | 0.14 | 0.12 | hydrogenase 1 - large subunit | ||||
| b0974 | hyaC | 0.27 | 0.16 | 0.16 | hydrogenase 1 - b-type cytochrome subunit | ||||
| b0975 | hyaD | 0.26 | 0.16 | 0.1 | protein involved in processing of HyaA and HyaB proteins | ||||
| b0976 | hyaE | 0.45 | 0.3 | 0.35 | protein involved in processing of HyaA and HyaB proteins | ||||
| b0977 | hyaF | 0.3 | 0.2 | 0.2 | protein involved in nickel incorporation into hydrogenase-1 proteins | ||||
| b1006 | ycdG | 2.04 | predicted transporter | ||||||
| b1014 | putA | 2.12 | fused DNA-binding transcriptional regulator ; proline dehydrogenase ; pyrroline-5-carboxylate dehydrogenase | ||||||
| b1016M | ycdN | 2 | 2.94 | 2.75 | 3.08 | 3.01 | NOT IN UP TO DATE ANNOTATION high-affinity iron permease | ||
| b1018 | ycdO | 2.27 | 2.24 | 2.45 | 2.64 | conserved protein | |||
| b1019 | ycdB | 2.11 | 2.16 | conserved protein | |||||
| b1024 | ycdS | 0.45 | 0.46 | predicted outer membrane protein | |||||
| b1101 | ptsG | 0.17 | 0.16 | 0.19 | fused glucose-specific PTS enzymes: IIBcomponent ; IIC component | ||||
| b1109 | ndh | 6.46 | 10.16 | 6.37 | 6.34 | 4.7 | respiratory NADH dehydrogenase 2/cupric reductase | ||
| b1112 | ycfR | 2.71 | 4.01 | 5.43 | 6.04 | predicted protein | |||
| b1135 | ymfC | 2.03 | 23S rRNA pseudouridine synthase | ||||||
| b1136 | icd | 4.3 | 3.6 | e14 prophage; isocitrate dehydrogenase - specific for NADP+ | |||||
| b1164 | ycgZ | 2.28 | 2.29 | predicted protein | |||||
| b1165 | ymgA | 2.42 | 2.49 | predicted protein | |||||
| b1166 | ymgB | 2.07 | predicted protein | ||||||
| b1172 | ymgG | 0.47 | 0.39 | 0.47 | predicted protein | ||||
| b1189 | dadA | 2.55 | 3.44 | 2.57 | 2.48 | D-amino acid dehydrogenase | |||
| b1190 | dadX | 2.08 | 3.8 | 3.47 | 2.76 | 2.46 | alanine racemase 2 - PLP-binding | ||
| b1200 | dhaK | 0.42 | 0.31 | 0.31 | 0.3 | dihydroxyacetone kinase - N-terminal domain | |||
| b1224 | narG | 0.21 | 0.13 | 0.11 | 0.15 | nitrate reductase 1 - alpha subunit | |||
| b1225 | narH | 0.43 | 0.27 | 0.25 | 0.28 | nitrate reductase 1 - beta (Fe-S) subunit | |||
| b1226 | narJ | 0.28 | 0.21 | 0.23 | molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 | ||||
| b1241 | adhE | 0.37 | 0.37 | 0.34 | 0.33 | fused acetaldehyde-CoA dehydrogenase ; iron-dependent alcohol dehydrogenase ; pyruvate-formate lyase deactivase | |||
| b1245 | oppC | 0.47 | oligopeptide transporter subunit ; membrane component of ABC superfamily | ||||||
| b1246 | oppD | 0.44 | 0.49 | oligopeptide transporter subunit ; ATP-binding component of ABC superfamily | |||||
| b1252 | tonB | 2.7 | 2.6 | 2.96 | 3.17 | membrane spanning protein in TonB-ExbB-ExbD complex | |||
| b1256 | ompW | 0.47 | 0.16 | 0.13 | 0.12 | outer membrane protein W | |||
| b1265 | trpL | 0.48 | trp operon leader peptide | ||||||
| b1275 | cysB | 2.3 | 2.51 | 2.38 | DNA-binding transcriptional dual regulator - O-acetyl-L-serine-binding | ||||
| b1276 | acnA | 2.05 | 2.24 | 2.58 | 2.68 | aconitate hydratase 1 | |||
| b1287 | yciW | 2.05 | 2.41 | 2.32 | predicted oxidoreductase | ||||
| b1297 | puuA | 2.58 | 3.83 | 4.64 | gamma-Glu-putrescine synthase | ||||
| b1298 | puuD | 3.1 | 3.38 | 4.93 | 5.97 | gamma-Glu-GABA hydrolase | |||
| b1300 | puuC | 2.73 | 3.5 | gamma-Glu-gamma-aminobutyraldehyde dehydrogenase - NAD(P)H-dependent | |||||
| b1301 | puuB | 3.15 | 4.38 | gamma-Glu-putrescine oxidase - FAD/NAD(P)-binding | |||||
| b1302 | puuE | 2.5 | 3.51 | GABA aminotransferase - PLP-dependent | |||||
| b1324 | tpx | 2.14 | 2.39 | 2.47 | 2.48 | lipid hydroperoxide peroxidase | |||
| b1332 | ynaJ | 2.17 | 2.67 | 2.11 | 2.06 | predicted inner membrane protein | |||
| b1376 | uspF | 0.5 | 0.48 | 0.35 | 0.34 | stress-induced protein - ATP-binding protein | |||
| b1378 | ydbK | 2.3 | 3.4 | 3.17 | fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein ; conserved protein ; FeS binding protein | ||||
| b1380 | ldhA | 2.43 | 2.39 | 2.17 | 1.99 | fermentative D-lactate dehydrogenase - NAD-dependent | |||
| b1426 | ydcH | 0.39 | 0.4 | predicted protein | |||||
| b1452 | yncE | 5.96 | 5.12 | 8.84 | 9.12 | conserved protein | |||
| b1463 | nhoA | 2.34 | 2.48 | N-hydroxyarylamine O-acetyltransferase | |||||
| b1481 | bdm | 2.06 | 3.42 | biofilm-dependent modulation protein | |||||
| b1492 | gadC | 0.49 | predicted glutamate:gamma-aminobutyric acid antiporter | ||||||
| b1528 | ydeA | 2.18 | 2.47 | 2.67 | predicted arabinose transporter | ||||
| b1541 | ydfZ | 0.4 | 0.25 | 0.19 | conserved protein | ||||
| b1587 | ynfE | 0.46 | 0.34 | 0.46 | 0.46 | oxidoreductase subunit | |||
| b1588 | ynfF | 0.48 | 0.3 | 0.25 | 0.26 | oxidoreductase subunit | |||
| b1589 | ynfG | 0.13 | oxidoreductase - Fe-S subunit | ||||||
| b1590 | ynfH | 0.29 | 0.31 | 0.26 | oxidoreductase - membrane subunit | ||||
| b1593 | ynfK | 0.45 | 0.36 | 0.34 | 0.31 | 0.36 | predicted dethiobiotin synthetase | ||
| b1594 | dgsA | 0.43 | 0.44 | 0.4 | 0.39 | DNA-binding transcriptional repressor | |||
| b1681 | sufD | 2.06 | 2.09 | component of SufBCD complex | |||||
| b1682 | sufC | 2.27 | component of SufBCD complex - ATP-binding component of ABC superfamily | ||||||
| b1683 | sufB | 2.02 | component of SufBCD complex | ||||||
| b1684 | sufA | 2.22 | 2.12 | Fe-S cluster assembly protein | |||||
| b1690 | ydiM | 0.4 | 0.46 | predicted transporter | |||||
| b1702 | pps | 2.86 | 3.37 | 2.99 | 2.86 | phosphoenolpyruvate synthase | |||
| b1729 | ydjN | 2.42 | 2.44 | 2.78 | 2.27 | predicted transporter | |||
| b1748 | astC | 2.05 | 2.27 | 2.08 | succinylornithine transaminase - PLP-dependent | ||||
| b1750 | ydjX | 0.26 | 0.24 | 0.21 | 0.2 | 0.18 | predicted inner membrane protein | ||
| b1752 | ydjZ | 0.38 | 0.33 | 0.31 | 0.32 | conserved inner membrane protein | |||
| b1753 | ynjA | 0.46 | conserved protein | ||||||
| b1757 | ynjE | 0.43 | 0.41 | 0.39 | predicted thiosulfate sulfur transferase | ||||
| b1761 | gdhA | 0.45 | 0.4 | 0.38 | glutamate dehydrogenase - NADP-specific | ||||
| b1778 | yeaA | 2.91 | 3.44 | 2.84 | 2.94 | 2.61 | methionine sulfoxide reductase B | ||
| b1779 | gapA | 0.46 | glyceraldehyde-3-phosphate dehydrogenase A | ||||||
| b1795 | yeaQ | 2 | 2.41 | conserved inner membrane protein | |||||
| b1817 | manX | 0.23 | 0.14 | 0.1 | fused mannose-specific PTS enzymes: IIA component ; IIB component | ||||
| b1818 | manY | 0.26 | 0.13 | 0.09 | mannose-specific enzyme IIC component of PTS | ||||
| b1819 | manZ | 0.24 | 0.14 | 0.11 | mannose-specific enzyme IID component of PTS | ||||
| b1841 | yobA | 2.1 | 2.52 | 2.09 | conserved protein | ||||
| b1847 | yebF | 2.03 | predicted protein | ||||||
| b1854 | pykA | 0.47 | 0.43 | 0.45 | 0.44 | pyruvate kinase II | |||
| b1891 | flhC | 0.48 | DNA-binding transcriptional dual regulator with FlhD | ||||||
| b1896 | otsA | 2.04 | 2.1 | trehalose-6-phosphate synthase | |||||
| b1905 | ftn | 0.23 | 0.14 | 0.12 | 0.11 | ferritin iron storage protein (cytoplasmic) | |||
| b1906 | yecH | 0.44 | 0.38 | 0.35 | 0.36 | predicted protein | |||
| b1917 | yecC | 2.48 | 2.96 | 2.87 | predicted transporter subunit: ATP-binding component of ABC superfamily | ||||
| b1918 | yecS | 2.18 | 2.5 | 2.49 | predicted transporter subunit: membrane component of ABC superfamily | ||||
| b1919 | yedO | 2.22 | 2.51 | 2.3 | D-cysteine desulfhydrase - PLP-dependent | ||||
| b1920 | fliY | 2.66 | 3 | 3.05 | 3.3 | cystine transporter subunit ; periplasmic-binding component of ABC superfamily | |||
| b1929 | yedE | 0.48 | 0.44 | 0.49 | predicted inner membrane protein | ||||
| b1987 | cbl | 1.94 | 3.75 | 4.34 | 4.06 | DNA-binding transcriptional activator of cysteine biosynthesis | |||
| b2013 | yeeE | 2.09 | 2.39 | 2.42 | 2.21 | predicted inner membrane protein | |||
| b2081 | yegQ | 2.01 | 2.39 | predicted peptidase | |||||
| b2087M | gatR | 0.33 | 0.32 | 0.32 | galactitol utilization operon repressor | ||||
| b2091 | gatD | 0.11 | 0.06 | 0.05 | galactitol-1-phosphate dehydrogenase - Zn-dependent and NAD(P)-binding |
