Filtered datset - aerobic to anaerobic transition .csv

Selected Cell

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Gene_name	Gene_ID	2min/0min	5min/0min	10min/0min	15min/0min	20min/0min	Description
thrL	b0001			0.35	0.29	0.24	thr operon leader peptide
thrA	b0002					0.49	fused aspartokinase I ; homoserine dehydrogenase I
thrB	b0003				0.45	0.34	homoserine kinase
thrC	b0004				0.43	0.36	threonine synthase
ispH	b0029				0.38	0.45	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase - 4Fe-4S protein
rihC	b0030				2.18		ribonucleoside hydrolase 3
dapB	b0031			2.31	3.13	3.25	dihydrodipicolinate reductase
carA	b0032		0.16	0.27	0.26	0.30	carbamoyl phosphate synthetase small subunit - glutamine amidotransferase
carB	b0033			0.34	0.38		carbamoyl-phosphate synthase large subunit
caiF	b0034		2.27	5.23	6.27	5.22	DNA-binding transcriptional activator
apaG	b0050				0.43	0.48	protein associated with Co2+ and Mg2+ efflux
ksgA	b0051				0.44		S-adenosylmethionine-6-N' -N'-adenosyl (rRNA) dimethyltransferase
thiP	b0067		0.21	0.14			fused thiamin transporter subunits of ABC superfamily: membrane components
leuD	b0071			0.47	0.32	0.25	3-isopropylmalate isomerase subunit
leuC	b0072				0.30	0.24	3-isopropylmalate isomerase subunit - dehydratase component
leuB	b0073		0.37	0.40	0.26	0.27	3-isopropylmalate dehydrogenase
leuA	b0074		0.47	0.47	0.26	0.29	2-isopropylmalate synthase
guaC	b0104		0.50				GMP reductase
ampD	b0110			2.11			N-acetyl-anhydromuranmyl-L-alanine amidase
aceE	b0114			0.16	0.09	0.08	pyruvate dehydrogenase - decarboxylase component E1 - thiamin-binding
aceF	b0115			0.40	0.23	0.17	pyruvate dehydrogenase - dihydrolipoyltransacetylase component E2
lpd	b0116			0.20	0.09	0.11	lipoamide dehydrogenase - E3 component is part of three enzyme complexes
acnB	b0118			0.20	0.14	0.12	bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase
cueO	b0123		3.59	2.41	3.61	4.25	multicopper oxidase (laccase)
gcd	b0124			0.44	0.48		glucose dehydrogenase
can	b0126		0.25	0.23	0.23	0.27	carbonic anhydrase
yadI	b0129		2.03	2.19	2.29	2.40	predicted PTS Enzyme IIA
pcnB	b0143		0.35	0.46			poly(A) polymerase I
ldcC	b0186				0.47		lysine decarboxylase 2 - constitutive
metQ	b0197			0.44	0.40	0.30	DL-methionine transporter subunit ; periplasmic-binding component of ABC superfamily
metI	b0198			0.39	0.35	0.27	DL-methionine transporter subunit ; membrane component protein of ABC superfamily
metN	b0199		0.46	0.37	0.46	0.43	DL-methionine transporter subunit ; ATP-binding component of ABC superfamily
fadE	b0221			0.25	0.20	0.17	acyl coenzyme A dehydrogenase
crl	b0240		0.38	0.40	0.46	0.36	DNA-binding transcriptional regulator
yagU	b0287				0.42	0.23	conserved inner membrane protein
betI	b0313			0.26		0.23	DNA-binding transcriptional repressor
yahK	b0325			0.41	0.29	0.34	predicted oxidoreductase - Zn-dependent and NAD(P)-binding
prpC	b0333			0.14	0.16	0.13	2-methylcitrate synthase
prpD	b0334				0.14	0.10	2-methylcitrate dehydratase
prpE	b0335			0.22	0.23	0.18	predicted propionyl-CoA synthetase with ATPase domain
codB	b0336				0.42		cytosine transporter
codA	b0337		0.47	0.41	0.46	0.39	cytosine deaminase
mhpR	b0346		0.18	0.12	0.13	0.17	DNA-binding transcriptional activator - 3HPP-binding
frmA	b0356			0.47	0.46	0.43	alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase
psiF	b0384			0.47	0.41	0.31	conserved protein
rdgC	b0393	0.44					DNA-binding protein - non-specific
yajB	b0404			0.36	0.31	0.34	conserved protein
cyoE	b0428			0.31	0.17	0.13	protoheme IX farnesyltransferase
cyoD	b0429			0.16	0.08	0.07	cytochrome o ubiquinol oxidase subunit IV
cyoC	b0430			0.10	0.05	0.04	cytochrome o ubiquinol oxidase subunit III
cyoB	b0431			0.13	0.08	0.10	cytochrome o ubiquinol oxidase subunit I
cyoA	b0432		0.16	0.11	0.09	0.10	cytochrome o ubiquinol oxidase subunit II
yajG	b0434				0.49		predicted lipoprotein
tig	b0436		0.37				peptidyl-prolyl cis/trans isomerase (trigger factor)
ybaV	b0442			2.27	2.49	2.12	conserved protein
ybaE	b0445		2.21	2.15	2.42	2.14	predicted transporter subunit: periplasmic-binding component of ABC superfamily
ybaY	b0453			0.32	0.34	0.26	predicted outer membrane lipoprotein
copA	b0484		5.13	11.73	15.47	22.13	copper transporter
ybaS	b0485					0.46	predicted glutaminase
ybbJ	b0488			2.40	2.22		conserved inner membrane protein
purE	b0523		0.27	0.20	0.20	0.26	N5-carboxyaminoimidazole ribonucleotide mutase
nmpC	b0553			2.23	2.19		DLP12 prophage; truncated outer membrane porin (pseudogene)
borD	b0557		0.42				DLP12 prophage; predicted lipoprotein
cusS	b0570				3.41	4.68	sensory histidine kinase in two-component regulatory system with CusR - senses copper ions
cusR	b0571		2.10	2.87	4.65	5.28	DNA-binding response regulator in two-component regulatory system with CusS
cusC	b0572		10.60	16.76	30.52	33.48	copper/silver efflux system - outer membrane component
cusF	b0573			25.20	30.58	43.04	periplasmic copper-binding protein
cusB	b0574			11.71	16.92	31.68	copper/silver efflux system - membrane fusion protein
cusA	b0575			2.60	3.22	4.93	copper/silver efflux system - membrane component
pheP	b0576		0.37	0.29			phenylalanine transporter
entA	b0596				0.34	0.31	2 -3-dihydro-2 -3-dihydroxybenzoate dehydrogenase
cstA	b0598			0.29	0.18	0.19	carbon starvation protein
uspG	b0607		2.60	4.46	5.49	4.32	universal stress protein UP12
citB	b0620			2.09	2.03		DNA-binding response regulator in two-component regulatory system with citA
dcuC	b0621		7.45	16.53	15.48	14.01	anaerobic C4-dicarboxylate transport
lipA	b0628			0.47			lipoate synthase
gltK	b0653			0.18			glutamate and aspartate transporter subunit ; membrane component of ABC superfamily
gltI	b0655		0.38	0.24	0.18	0.18	glutamate and aspartate transporter subunit ; periplasmic-binding component of ABC superfamily
nagB	b0678			0.48	0.40	0.40	glucosamine-6-phosphate deaminase
ybfA	b0699			3.98	4.45	3.48	predicted protein
gltA	b0720			0.30	0.17	0.17	citrate synthase
sdhC	b0721		0.13	0.08	0.06	0.05	succinate dehydrogenase - membrane subunit - binds cytochrome b556
sdhD	b0722		0.19	0.11	0.10	0.10	succinate dehydrogenase - membrane subunit - binds cytochrome b556
sdhA	b0723		0.30	0.07	0.06	0.06	succinate dehydrogenase - flavoprotein subunit
sdhB	b0724			0.09	0.08	0.06	succinate dehydrogenase - FeS subunit
b0725	b0725			0.20		0.18	"FALSE ANNOTATION (Riley2005) - """"orf - hypothetical protein"""""
sucA	b0726			0.19	0.19	0.14	2-oxoglutarate decarboxylase - thiamin-requiring
sucB	b0727			0.30	0.15	0.14	dihydrolipoyltranssuccinase
sucC	b0728			0.40	0.31	0.34	succinyl-CoA synthetase - beta subunit
sucD	b0729			0.42	0.23	0.20	succinyl-CoA synthetase - NAD(P)-binding - alpha subunit
cydA	b0733			2.45			cytochrome d terminal oxidase - subunit I
cydB	b0734		2.17	2.46	2.11		cytochrome d terminal oxidase - subunit II
ybgF	b0742					0.49	predicted protein
ybgS	b0753			0.34	0.29	0.29	conserved protein
gpmA	b0755			0.31	0.16	0.17	phosphoglyceromutase 1
ybhE	b0767				0.29	0.29	6-phosphogluconolactonase
ybhC	b0772		0.43				predicted pectinesterase
bioF	b0776					0.48	8-amino-7-oxononanoate synthase
moaA	b0781			2.36	2.45	2.07	molybdopterin biosynthesis protein A
moaB	b0782			2.98	3.05	2.51	molybdopterin biosynthesis protein B
moaC	b0783			2.37	2.46		molybdopterin biosynthesis - protein C
moaD	b0784			2.38	2.28	2.29	molybdopterin synthase - small subunit
moaE	b0785			3.10			molybdopterin synthase - large subunit
ybhP	b0790			0.12		0.14	predicted DNase
ybiA	b0798			2.17	2.47	2.06	conserved protein
glnQ	b0809		0.31	0.15	0.18	0.15	glutamine transporter subunit ; ATP-binding component of ABC superfamily
glnP	b0810		0.34	0.15	0.20	0.28	glutamine transporter subunit ; membrane component of ABC superfamily
glnH	b0811			0.26	0.19	0.18	glutamine transporter subunit ; periplasmic binding component of ABC superfamily
iaaA	b0828			0.47		0.46	L-asparaginase
yliH	b0836	2.59	4.37	6.37	7.87	8.47	conserved protein
dacC	b0839			0.47			D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
ybjM	b0848		3.11	3.34	3.22	2.97	predicted inner membrane protein
potG	b0855		0.35	0.19	0.18	0.18	putrescine transporter subunit: ATP-binding component of ABC superfamily
ybjP	b0865				0.43	0.39	predicted lipoprotein
poxB	b0871			0.39	0.38	0.31	pyruvate dehydrogenase (pyruvate oxidase) - thiamin-dependent - FAD-binding
hcp	b0873		2.98	3.30	4.02	2.84	hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases
cspD	b0880			2.09	2.17		cold shock protein homolog
infA	b0884	0.36	0.40				translation initiation factor IF-1
dmsB	b0895			7.97	7.19	5.19	dimethyl sulfoxide reductase - anaerobic - subunit B
dmsC	b0896			4.21	4.86		dimethyl sulfoxide reductase - anaerobic - subunit C
ycaC	b0897			0.43	0.34	0.23	predicted hydrolase
focA	b0904			2.46	2.30	2.11	formate transporter
aroA	b0908		0.34	0.32	0.33	0.45	5-enolpyruvylshikimate-3-phosphate synthetase
ycbJ	b0919		4.81	5.76	6.67	5.52	conserved protein
aspC	b0928		0.48	0.50	0.45	0.49	aspartate aminotransferase - PLP-dependent
pepN	b0932				0.48	0.36	aminopeptidase N
yccJ	b1003				0.48	0.30	predicted protein
wrbA	b1004			0.47	0.33	0.23	predicted flavoprotein in Trp regulation
putP	b1015			0.36	0.47		proline:sodium symporter
yceK	b1050					0.38	predicted lipoprotein
yceJ	b1057				0.29	0.18	predicted cytochrome b561
yceP	b1060		3.86	7.05	9.98	7.18	predicted protein
pyrC	b1062	0.39	0.21	0.17	0.25	0.27	dihydro-orotase
grxB	b1064					0.44	glutaredoxin 2 (Grx2)
flgD	b1075					0.50	flagellar hook assembly protein
ycfH	b1100			0.40	0.36	0.28	predicted metallodependent hydrolase
hinT	b1103					0.49	purine nucleoside phosphoramidase
potD	b1123				0.47		polyamine transporter subunit ; periplasmic-binding component of ABC superfamily
potC	b1124			0.48	0.40	0.39	polyamine transporter subunit ; membrane component of ABC superfamily
potB	b1125		0.49				polyamine transporter subunit ; membrane component of ABC superfamily
purB	b1131		0.39	0.33	0.32	0.28	adenylosuccinate lyase
hflD	b1132		0.24	0.26	0.28	0.39	predicted lysogenization regulator
icd	b1136			0.34	0.23	0.17	e14 prophage; isocitrate dehydrogenase - specific for NADP+
minE	b1174				0.49	0.48	cell division topological specificity factor
ycgB	b1188			0.20	0.14	0.11	conserved protein
dadA	b1189		0.40	0.17	0.15	0.15	D-amino acid dehydrogenase
dadX	b1190			0.16	0.17	0.10	alanine racemase 2 - PLP-binding
ychF	b1203		0.48	0.48	0.47		predicted GTP-binding protein
ychH	b1205	2.62	2.53	2.25	2.17		predicted inner membrane protein
narG	b1224		5.13	14.50	12.57	9.41	nitrate reductase 1 - alpha subunit
narJ	b1226			6.76	5.80	5.34	molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1
narI	b1227			2.66	2.57	2.35	nitrate reductase 1 - gamma (cytochrome b(NR)) subunit
adhE	b1241		2.47	2.34	2.09		fused acetaldehyde-CoA dehydrogenase ; iron-dependent alcohol dehydrogenase ; pyruvate-formate lyase deactivase
oppA	b1243			5.75	7.31	4.63	oligopeptide transporter subunit ; periplasmic-binding component of ABC superfamily
oppB	b1244			7.61	5.72	5.38	oligopeptide transporter subunit ; membrane component of ABC superfamily
oppC	b1245			5.58	5.77	5.56	oligopeptide transporter subunit ; membrane component of ABC superfamily
oppD	b1246			6.13	6.63	6.55	oligopeptide transporter subunit ; ATP-binding component of ABC superfamily
tonB	b1252				0.37	0.40	membrane spanning protein in TonB-ExbB-ExbD complex
ompW	b1256	4.04	6.48	6.78	5.38	3.83	outer membrane protein W
yciF	b1258				0.45	0.32	conserved protein
trpB	b1261			0.39	0.39	0.37	tryptophan synthase - beta subunit
trpC	b1262			0.38	0.36	0.27	fused indole-3-glycerolphosphate synthetase ; N-(5-phosphoribosyl)anthranilate isomerase
trpD	b1263		0.39	0.33	0.37	0.27	fused glutamine amidotransferase (component II) of anthranilate synthase ; anthranilate phosphoribosyl transferase
trpE	b1264		0.31	0.39	0.33	0.29	component I of anthranilate synthase
acnA	b1276			0.47	0.31	0.23	aconitate hydratase 1
sapF	b1290			2.16			predicted antimicrobial peptide transporter subunit ; ATP-binding component of ABC superfamily
pspA	b1304			2.25	2.55	2.61	regulatory protein for phage-shock-protein operon
pspB	b1305			2.84	2.75	3.15	DNA-binding transcriptional regulator of psp operon
pspC	b1306			2.01	2.20		DNA-binding transcriptional activator
pspE	b1308			2.83	3.52	2.53	thiosulfate:cyanide sulfurtransferase (rhodanese)
tpx	b1324		0.43	0.19	0.13	0.11	lipid hydroperoxide peroxidase
ynaJ	b1332			0.49			predicted inner membrane protein
uspE	b1333		2.57	2.46	2.64		stress-induced protein
uspF	b1376			2.97	2.56		stress-induced protein - ATP-binding protein
paaJ	b1397		0.42	0.32	0.30	0.37	predicted beta-ketoadipyl CoA thiolase
paaX	b1399		0.48	0.35	0.34	0.39	DNA-binding transcriptional repressor of phenylacetic acid degradation - aryl-CoA responsive
aldA	b1415		0.21	0.06	0.06	0.08	aldehyde dehydrogenase A - NAD-linked
gapC	b1416.M		0.47				glyceraldehyde-3-phosphate dehydrogenase - Pseudogene?
ydcI	b1422		0.30	0.33	0.30	0.42	predicted DNA-binding transcriptional regulator
ydcH	b1426		2.43	3.30	4.46	4.09	predicted protein
ydcS	b1440			0.47	0.34	0.43	predicted spermidine/putrescine transporter subunit ; periplasmic-binding component of ABC superfamily
ydcU	b1442			0.34			predicted spermidine/putrescine transporter subunit ; membrane component of ABC superfamily
ydcV	b1443			0.26	0.13	0.09	predicted spermidine/putrescine transporter subunit ; membrane component of ABC superfamily
ydcW	b1444			0.45	0.41	0.34	medium chain aldehyde dehydrogenase
yncE	b1452				0.41	0.47	conserved protein
yncG	b1454					0.31	predicted enzyme
adhP	b1478				0.22	0.25	alcohol dehydrogenase - 1-propanol preferring
bdm	b1481					0.46	biofilm-dependent modulation protein
osmC	b1482				0.42	0.23	osmotically inducible - stress-inducible membrane protein
ddpD	b1484			0.26	0.20	0.22	D-ala-D-ala transporter subunit ; ATP-binding component of ABC superfamily
ddpX	b1488			0.38	0.38	0.38	D-ala-D-ala dipeptidase - Zn-dependent
yddV	b1490					0.49	predicted diguanylate cyclase
ydeK	b1510			2.08			predicted lipoprotein
tam	b1519			0.40	0.38		trans-aconitate methyltransferase
ydfZ	b1541		2.08	5.63	6.13	7.10	conserved protein
cspB	b1557					2.65	Qin prophage; cold shock protein
ynfE	b1587		3.37	6.66	5.98	6.08	oxidoreductase subunit
ynfF	b1588			10.18	10.32	9.11	oxidoreductase subunit
ynfG	b1589			8.20	9.15	8.52	oxidoreductase - Fe-S subunit