Filtered datset - aerobic to anaerobic transition .csv

Selected Cell

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Sheet1

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hybA	b2996			2.45	2.94	3.12	hydrogenase 2 4Fe-4S ferredoxin-type component
hybO	b2997		3.25	8.19	11.97	12.26	hydrogenase 2 - small subunit
exbD	b3005				0.40	0.31	membrane spanning protein in TonB-ExbB-ExbD complex
exbB	b3006				0.34	0.35	membrane spanning protein in TonB-ExbB-ExbD complex
b3007	b3007		3.93	2.02			"FALSE ANNOTATION (Riley2005) - """"orf - hypothetical protein"""""
metC	b3008					0.47	cystathionine beta-lyase - PLP-dependent
yqhD	b3011			2.51	2.32		alcohol dehydrogenase - NAD(P)-dependent
yqhH	b3014					2.01	predicted outer membrane lipoprotein
ribB	b3041		2.15	2.73	2.89	2.99	3 -4-dihydroxy-2-butanone-4-phosphate synthase
yqiI	b3048				2.13		conserved protein
glgS	b3049			3.28	3.19		predicted glycogen synthesis protein
yqiJ	b3050		2.05		2.16		predicted inner membrane protein
rpsU	b3065	0.32	0.43				30S ribosomal subunit protein S21
ygjG	b3073		0.41	0.29	0.26	0.26	putrescine:2-oxoglutaric acid aminotransferase - PLP-dependent
ygjR	b3087		2.13				predicted NAD(P)-binding dehydrogenase
uxaC	b3092			2.07			uronate isomerase
yqjC	b3097				0.45	0.48	conserved protein
yqjD	b3098				0.46	0.34	conserved protein
yqjE	b3099					0.37	conserved inner membrane protein
yqjK	b3100				0.45	0.38	conserved protein
yhaQ	b3112				3.87	3.42	putative l-serine dehydratase
tdcF	b3113			3.01	5.79	5.07	predicted L-PSP (mRNA) endoribonuclease
tdcE	b3114					2.18	pyruvate formate-lyase 4/2-ketobutyrate formate-lyase
tdcD	b3115			5.09	6.14	5.31	propionate kinase/acetate kinase C - anaerobic
tdcC	b3116			2.70	2.72	2.68	L-threonine/L-serine transporter
tdcB	b3117			11.05	11.98	11.75	catabolic threonine dehydratase - PLP-dependent
tdcA	b3118			2.76	3.55	2.60	DNA-binding transcriptional activator
tdcR	b3119			2.76	2.79	3.37	DNA-binding transcriptional activator
garD	b3128				2.02	2.52	(D)-galactarate dehydrogenase
yhbT	b3157		2.78	3.04	2.54		predicted lipid carrier protein
rpmA	b3185	0.47	0.48				50S ribosomal subunit protein L27
gltB	b3212			0.39	0.39	0.38	glutamate synthase - large subunit
argR	b3237			2.49	2.42	2.49	DNA-binding transcriptional dual regulator - L-arginine-binding
yhcO	b3239				0.33	0.37	predicted barnase inhibitor
rpmC	b3312			0.46			50S ribosomal subunit protein L29
rpsC	b3314			0.47			30S ribosomal subunit protein S3
rplV	b3315			0.42			50S ribosomal subunit protein L22
rplD	b3319		0.48				50S ribosomal subunit protein L4
bfr	b3336				0.40	0.43	bacterioferritin - iron storage and detoxification protein
bfd	b3337				0.31	0.29	bacterioferritin-associated ferredoxin
rpsG	b3341		0.37				30S ribosomal subunit protein S7
rpsL	b3342		0.38				30S ribosomal subunit protein S12
argD	b3359			2.49	2.01	2.09	bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase
yhfG	b3362			0.35	0.32	0.39	predicted protein
nirB	b3365		5.44	4.53	3.30	2.67	nitrite reductase - large subunit - NAD(P)H-binding
pck	b3403				2.15		phosphoenolpyruvate carboxykinase
feoA	b3408	4.17	13.93	3.81			ferrous iron transporter - protein A
feoB	b3409		8.44	6.12			fused ferrous iron transporter - protein B: GTP-binding protein ; membrane protein
yhgG	b3410		8.25	7.00			predicted DNA-binding transcriptional regulator
glgP	b3428					2.30	glycogen phosphorylase
glgA	b3429			2.35	3.62	4.14	glycogen synthase
glgC	b3430			2.89	4.78	5.38	glucose-1-phosphate adenylyltransferase
glgX	b3431		2.01	2.57	4.29	4.19	glycogen debranching enzyme
glgB	b3432			2.19	3.44	3.53	1 -4-alpha-glucan branching enzyme
asd	b3433			2.40	3.27	3.14	aspartate-semialdehyde dehydrogenase - NAD(P)-binding
ugpA	b3452		0.31		0.26	0.22	glycerol-3-phosphate transporter subunit ; membrane component of ABC superfamily
livJ	b3460			0.45	0.28	0.20	leucine/isoleucine/valine transporter subunit ; periplasmic-binding component of ABC superfamily
nikA	b3476			3.79	4.52	5.24	nickel transporter subunit ; periplasmic-binding component of ABC superfamily
nikD	b3479		2.48	12.96	14.56	11.37	nickel transporter subunit ; ATP-binding component of ABC superfamily
nikE	b3480			6.17	5.86	6.14	nickel transporter subunit ; ATP-binding component of ABC superfamily
uspA	b3495			2.41	2.33		universal stress global response regulator
gadX	b3516			0.48	0.43	0.48	DNA-binding transcriptional dual regulator
dctA	b3528		0.46	0.16	0.16	0.21	C4-dicarboxylic acid - orotate and citrate transporter
bcsG	b3538				0.45		predicted inner membrane protein
dppD	b3541		0.43	0.32	0.25	0.27	dipeptide transporter ; ATP-binding component of ABC superfamily
dppC	b3542		0.40	0.37	0.34	0.36	dipeptide transporter ; membrane component of ABC superfamily
dppB	b3543		0.47	0.47	0.38	0.38	dipeptide transporter; membrane component of ABC superfamily
dppA	b3544				0.43	0.36	dipeptide transporter ; periplasmic-binding component of ABC superfamily
yiaG	b3555			0.48	0.32	0.32	predicted transcriptional regulator
cspA	b3556	2.60	2.60	6.70	7.11	10.82	major cold shock protein
yiaI	b3573		2.19	3.48	2.90	3.06	predicted hydrogenase - 4Fe-4S ferredoxin-type component
aldB	b3588			0.21	0.28	0.20	aldehyde dehydrogenase B
selA	b3591		2.22	3.01	2.35	2.37	selenocysteine synthase
lldP	b3603				0.21	0.19	L-lactate permease
lldR	b3604			0.45	0.48	0.37	DNA-binding transcriptional repressor
lldD	b3605			0.40	0.28	0.26	L-lactate dehydrogenase - FMN-linked
cysE	b3607		0.50				serine acetyltransferase
yibN	b3611		0.49				predicted rhodanese-related sulfurtransferase
gpmI	b3612			2.13			phosphoglycero mutase III - cofactor-independent
mutM	b3635		0.44				formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase
rpmG	b3636	0.47	0.34	0.49			50S ribosomal subunit protein L33
dinD	b3645			2.07	2.48		DNA-damage-inducible protein
nlpA	b3661					0.44	cytoplasmic membrane lipoprotein-28
ilvN	b3670		0.43	0.23	0.26	0.24	acetolactate synthase I - small subunit
ilvB	b3671		0.39	0.30	0.24	0.23	acetolactate synthase I - large subunit
yidB	b3698			0.45			conserved protein
rpmH	b3703	0.40	0.37				50S ribosomal subunit protein L34
rnpA	b3704	0.38	0.39				protein C5 component of RNase P
mdtL	b3710				2.86	2.81	multidrug efflux system protein
yieG	b3714		0.29	0.43	0.43		predicted inner membrane protein
atpD	b3732			0.38	0.41	0.36	F1 sector of membrane-bound ATP synthase - beta subunit
atpA	b3734				0.49		F1 sector of membrane-bound ATP synthase - alpha subunit
yieN	b3746		2.24	3.23	2.67	2.53	fused predicted transcriptional regulator: sigma54 activator protein ; conserved protein
ilvG	b3767M		3.02			0.40	acetolactate synthase ii - large subunit
ilvM	b3769		2.35	2.53			acetolactate synthase II - small subunit
ilvE	b3770			2.38			branched-chain amino-acid aminotransferase
ilvD	b3771			2.48			dihydroxyacid dehydratase
ilvC	b3774		0.23	0.20	0.23	0.19	ketol-acid reductoisomerase - NAD(P)-binding
yifK	b3795				0.37	0.43	predicted transporter
xerC	b3811		0.48				site-specific tyrosine recombinase
yigI	b3820		0.28	0.20	0.16		conserved protein
metR	b3828		0.34	0.27	0.23	0.28	DNA-binding transcriptional activator - homocysteine-binding
metE	b3829			0.12	0.07	0.06	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase
tatB	b3838	0.45					TatABCE protein translocation system subunit
fadA	b3845		0.48	0.26	0.27	0.25	3-ketoacyl-CoA thiolase (thiolase I)
fadB	b3846		0.26	0.13	0.14	0.13	fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase ; 3-hydroxyacyl-CoA dehydrogenase
yihI	b3866		0.47	0.36	0.42	0.47	conserved protein
rhaB	b3904				2.23	3.17	rhamnulokinase
sodA	b3908			0.35	0.25	0.35	superoxide dismutase - Mn
yiiO	b3913M				4.62	7.09	uncharacterized periplasmic protein
yiiT	b3923		2.00				stress-induced protein
glpX	b3925				2.42		fructose 1 -6-bisphosphatase II
rraA	b3929		2.07	2.59	2.26	2.09	ribonuclease E (RNase E) inhibitor protein
metB	b3939			0.46			cystathionine gamma-synthase - PLP-dependent
gldA	b3945		4.13	8.05	10.22	8.18	glycerol dehydrogenase - NAD
fsaB	b3946			2.12	2.07	2.38	fructose-6-phosphate aldolase 2
argC	b3958			2.28			N-acetyl-gamma-glutamylphosphate reductase - NAD(P)-binding
birA	b3973				2.36	3.52	bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase and DNA-binding transcriptional repressor - bio-5'-AMP-binding
rplA	b3984		0.41				50S ribosomal subunit protein L1
thiH	b3990				0.34	0.33	thiamin biosynthesis ThiGH complex subunit
thiG	b3991				0.39	0.30	thiamin biosynthesis ThiGH complex subunit
thiF	b3992				0.33	0.40	thiamin (thiazole moiety) biosynthesis protein
thiE	b3993		0.44	0.40	0.34	0.31	thiamin phosphate synthase (thiamin phosphate pyrophosphorylase)
thiC	b3994		0.46	0.45	0.35	0.27	thiamin (pyrimidine moiety) biosynthesis protein
rsd	b3995		0.49	0.42	0.33	0.45	stationary phase protein - binds sigma 70 RNA polymerase subunit
yjaH	b4001			2.12	2.51	2.31	conserved protein
zraP	b4002				7.64	11.38	Zn-binding periplasmic protein
metA	b4013		0.47	0.29	0.34	0.28	homoserine transsuccinylase
aceA	b4015			0.29	0.16	0.16	isocitrate lyase
aceK	b4016			0.35	0.23	0.29	isocitrate dehydrogenase kinase/phosphatase
yjbD	b4023					2.03	conserved protein
lysC	b4024				2.45	2.42	aspartokinase III
malG	b4032			2.19	3.75	5.05	maltose transporter subunit ; membrane component of ABC superfamily
malF	b4033		2.35	2.89	4.67	5.48	maltose transporter subunit ; membrane component of ABC superfamily
malE	b4034				2.44	2.77	maltose transporter subunit ; periplasmic-binding component of ABC superfamily
malK	b4035				2.03	2.53	fused maltose transport subunit - ATP-binding component of ABC superfamily ; regulatory protein
lamB	b4036					2.49	maltose outer membrane porin (maltoporin)
malM	b4037				2.64	3.59	maltose regulon periplasmic protein
ubiC	b4039		0.37	0.36	0.38	0.36	chorismate pyruvate lyase
zur	b4046		2.06	2.32	2.13		DNA-binding transcriptional repressor - Zn(II)-binding
yjbO	b4050			2.23	2.49	2.28	phage shock protein G
tyrB	b4054		0.46		0.45	0.35	tyrosine aminotransferase - tyrosine-repressible - PLP-dependent
yjcB	b4060				2.18	2.76	predicted inner membrane protein
actP	b4067			0.14	0.07	0.05	acetate transporter
yjcH	b4068			0.10	0.03	0.02	conserved inner membrane protein involved in acetate transport
acs	b4069			0.15	0.07	0.06	acetyl-CoA synthetase
fdhF	b4079				2.47	2.18	formate dehydrogenase-H - selenopolypeptide subunit
phnK	b4097			2.90	3.25	4.14	carbon-phosphorus lyase complex subunit
fumB	b4122				2.38	3.93	anaerobic class I fumarate hydratase (fumarase B)
dcuB	b4123				2.28	3.75	C4-dicarboxylate antiporter
yjdC	b4135		0.34	0.46	0.42	0.45	predicted transcriptional regulator
dcuA	b4138			3.28	4.79	3.72	C4-dicarboxylate antiporter
aspA	b4139		2.24	3.18	3.20	3.00	aspartate ammonia-lyase
blc	b4149			0.37	0.34	0.33	outer membrane lipoprotein (lipocalin)
frdD	b4151			3.41	3.28	4.48	fumarate reductase (anaerobic) - membrane anchor subunit
frdC	b4152		2.35	4.22	4.18	4.74	fumarate reductase (anaerobic) - membrane anchor subunit
frdB	b4153		2.75	5.10	5.59	5.80	fumarate reductase (anaerobic) - Fe-S subunit
frdA	b4154		2.02	2.50	3.25	3.23	fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit
mutL	b4170				2.69	5.96	methyl-directed mismatch repair protein
hflK	b4174			0.48	0.46		modulator for HflB protease specific for phage lambda cII repressor
yjfN	b4188	2.33					predicted protein
yjfO	b4189	2.80					conserved protein
ulaA	b4193				2.03		L-ascorbate-specific enzyme IIC component of PTS
rplI	b4203		0.48				50S ribosomal subunit protein L9
cycA	b4208		0.37	0.30	0.27	0.31	D-alanine/D-serine/glycine transporter
cpdB	b4213					0.49	2':3'-cyclic-nucleotide 2'-phosphodiesterase
ytfJ	b4216			0.41	0.32	0.36	predicted transcriptional regulator
ytfK	b4217					0.47	conserved protein
ytfQ	b4227			0.27	0.24	0.21	predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily
ytfR	b4228			0.44	0.32	0.35	putative atp-binding component of a transport system
treB	b4240			2.06	3.12	4.28	fused trehalose(maltose)-specific PTS enzyme: IIB component ; IIC component
pyrI	b4244		0.39	0.11	0.09	0.06	aspartate carbamoyltransferase - regulatory subunit
pyrB	b4245		0.45	0.14	0.07	0.05	aspartate carbamoyltransferase - catalytic subunit
argI	b4254		0.48	2.67			ornithine carbamoyltransferase 1
insN	b4283			0.30	0.25	0.24	KpLE2 phage-like element; partial regulator of insertion element IS911B. Interrupted by insertion of IS30 element.
sgcE	b4301			0.49	0.37	0.41	KpLE2 phage-like element; predicted epimerase
sgcA	b4302			0.48	0.28	0.41	KpLE2 phage-like element; predicted phosphotransferase enzyme IIA component
sgcQ	b4303			0.42	0.26	0.18	KpLE2 phage-like element; predicted nucleoside triphosphatase
sgcC	b4304				0.32	0.23	KpLE2 phage-like element; predicted phosphotransferase enzyme IIC component
sgcX	b4305				0.30	0.24	KpLE2 phage-like element; predicted endoglucanase with Zn-dependent exopeptidase domain
fimE	b4313					2.81	tyrosine recombinase/inversion of on/off regulator of fimA
yjiL	b4334			4.35	4.67	5.31	predicted ATPase - activator of (R)-hydroxyglutaryl-CoA dehydratase
yjiM	b4335			6.76	9.70	9.38	predicted 2-hydroxyglutaryl-CoA dehydratase
hsdR	b4350					2.07	endonuclease R
prfC	b4375		0.46				peptide chain release factor RF-3
osmY	b4376			0.35	0.26	0.29	periplasmic protein
yjjW	b4379					2.52	predicted pyruvate formate lyase activating enzyme
yjjI	b4380		5.80	12.77	10.13	8.04	conserved protein
deoC	b4381		2.03				2-deoxyribose-5-phosphate aldolase - NAD(P)-linked
deoA	b4382				0.43	0.39	thymidine phosphorylase
arcA	b4401		0.39	0.26	0.26	0.26	DNA-binding response regulator in two-component regulatory system with ArcB or CpxA