Filtered datset - aerobic to anaerobic transition .csv

Selected Cell

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Value:

Sheet1

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ynfH	b1590			9.01	10.18	9.12	oxidoreductase - membrane subunit
dmsD	b1591				2.79		twin-argninine leader-binding protein for DmsA and TorA
ynfK	b1593		9.18	9.19	10.55	7.52	predicted dethiobiotin synthetase
fumC	b1611			0.23	0.14	0.14	fumarate hydratase (fumarase C) -aerobic Class II
fumA	b1612		0.39	0.22	0.19	0.17	fumarate hydratase (fumarase A) - aerobic Class I
hdhA	b1619					0.36	7-alpha-hydroxysteroid dehydrogenase - NAD-dependent
rsxC	b1629		0.42				fused predicted 4Fe-4S ferredoxin-type protein ; conserved protein
ydgR	b1634			2.37	2.59	2.37	predicted transporter
ydhH	b1640			2.19			conserved protein
ydhD	b1654				0.48	0.49	conserved protein
purR	b1658	0.26	0.26	0.35	0.31	0.32	DNA-binding transcriptional repressor - hypoxanthine-binding
cfa	b1661					0.34	cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase)
ydhU	b1670				2.22	2.29	predicted cytochrome
ydhW	b1672				3.56	4.13	predicted protein
ydhV	b1673			2.59	4.62	4.23	predicted oxidoreductase
ydhY	b1674				8.37		predicted 4Fe-4S ferridoxin-type protein
sufS	b1680				0.50	0.40	selenocysteine lyase - PLP-dependent
sufC	b1682			0.45	0.31	0.32	component of SufBCD complex - ATP-binding component of ABC superfamily
sufB	b1683			0.41	0.31	0.35	component of SufBCD complex
ydiH	b1685			2.38	2.18		predicted protein
ydiU	b1706				0.49		conserved protein
btuE	b1710			0.45			predicted glutathione peroxidase
ydiZ	b1724					0.46	predicted protein
yniA	b1725		2.51	2.41	2.25	2.09	predicted phosphotransferase/kinase
ydjN	b1729				0.38	0.29	predicted transporter
osmE	b1739			0.46	0.37	0.25	DNA-binding transcriptional activator
astA	b1747			0.24			arginine succinyltransferase
astC	b1748		0.39	0.17	0.22	0.25	succinylornithine transaminase - PLP-dependent
xthA	b1749					0.48	exonuclease III
ydjY	b1751			3.22	3.35	3.54	predicted protein
ydjZ	b1752			2.66	2.60	2.58	conserved inner membrane protein
ynjA	b1753			2.21	2.11	2.15	conserved protein
ynjE	b1757			2.94	2.93	2.75	predicted thiosulfate sulfur transferase
gdhA	b1761				2.10	2.17	glutamate dehydrogenase - NADP-specific
yeaA	b1778		0.18	0.13	0.13	0.11	methionine sulfoxide reductase B
mipA	b1782		0.33	0.41	0.40	0.42	scaffolding protein for murein synthesizing machinery
yeaG	b1783			0.32	0.20	0.20	conserved protein with nucleoside triphosphate hydrolase domain
yeaQ	b1795			0.36	0.32	0.25	conserved inner membrane protein
manX	b1817			2.54	2.46		fused mannose-specific PTS enzymes: IIA component ; IIB component
manY	b1818			3.17	2.46	2.67	mannose-specific enzyme IIC component of PTS
manZ	b1819		2.07	2.98	3.20	3.29	mannose-specific enzyme IID component of PTS
yebN	b1821				2.30	2.14	conserved inner membrane protein
yebV	b1836					0.31	predicted protein
yebE	b1846				2.47	3.30	conserved protein
pykA	b1854			2.58	2.36	2.13	pyruvate kinase II
otsA	b1896			0.28	0.25	0.30	trehalose-6-phosphate synthase
otsB	b1897			0.37	0.30	0.36	trehalose-6-phosphate phosphatase - biosynthetic
araF	b1901				2.28		L-arabinose transporter subunit ; periplasmic-binding component of ABC superfamily
yecI	b1902			3.80	6.03	4.45	predicted ferritin-like protein
ftn	b1905				2.73	2.14	ferritin iron storage protein (cytoplasmic)
yecH	b1906			3.14	3.15	2.77	predicted protein
yecA	b1908				2.03		conserved metal-binding protein
yecF	b1915			2.07	2.15		predicted protein
fliY	b1920			0.30	0.27	0.23	cystine transporter subunit ; periplasmic-binding component of ABC superfamily
yodD	b1953			0.40		0.25	predicted protein
yedP	b1955			0.43			conserved protein
yodB	b1974				0.49		predicted cytochrome
amn	b1982			0.46	0.43	0.45	AMP nucleosidase
yeeD	b2012			0.35	0.35	0.27	conserved protein
yeeE	b2013			0.28	0.28	0.26	predicted inner membrane protein
hisD	b2020			4.77	2.64		bifunctional histidinal dehydrogenase and histidinol dehydrogenase
hisC	b2021			5.62	2.41		histidinol-phosphate aminotransferase
hisH	b2023			2.53			imidazole glycerol phosphate synthase - glutamine amidotransferase subunit with HisF
hisF	b2025			2.13	2.39		imidazole glycerol phosphate synthase - catalytic subunit with HisH
hisI	b2026				2.11		fused phosphoribosyl-AMP cyclohydrolase ; phosphoribosyl-ATP pyrophosphatase
cld	b2027	0.49					regulator of length of O-antigen component of lipopolysaccharide chains
yegP	b2080				0.27	0.17	predicted protein
yegS	b2086			0.36	0.37	0.32	conserved protein
fbaB	b2097				0.38	0.29	fructose-bisphosphate aldolase class I
yehZ	b2131			0.32	0.41	0.40	predicted transporter subunit: periplasmic-binding component of ABC superfamily
yeiT	b2146		2.01	5.90	9.25	10.45	predicted oxidoreductase
mglC	b2148		0.47	0.23	0.29	0.28	methyl-galactoside transporter subunit ; membrane component of ABC superfamily
mglA	b2149		0.37	0.22	0.24	0.31	fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components
mglB	b2150		0.13	0.04	0.04	0.04	methyl-galactoside transporter subunit ; periplasmic-binding component of ABC superfamily
folE	b2153			0.47	0.40	0.35	GTP cyclohydrolase I
fruA	b2167		2.34	2.59			fused fructose-specific PTS enzymes: IIBcomponent ; IIC components
fruK	b2168		3.47	2.54			fructose-1-phosphate kinase
fruB	b2169		3.21	2.42			fused fructose-specific PTS enzymes: IIA component ; HPr component
yeiP	b2171	0.49	0.39	0.46	0.43		predicted elongtion factor
spr	b2175	0.38					predicted peptidase - outer membrane lipoprotein
yejG	b2181		0.44	0.36			predicted protein
ccmA	b2201		2.57	3.57	3.58	3.56	heme exporter subunit ; ATP-binding component of ABC superfamily
napC	b2202		2.96	3.84	3.85	3.47	nitrate reductase - cytochrome c-type -periplasmic
napB	b2203				2.06	2.30	nitrate reductase - small - cytochrome C550 subunit - periplasmic
napH	b2204			2.87	4.51	4.39	ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)
napG	b2205			2.91	3.43	3.74	ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)
napD	b2207			2.74	3.14	3.10	assembly protein for periplasmic nitrate reductase
nrdA	b2234		0.36		0.39	0.49	ribonucleoside diphosphate reductase 1 - alpha subunit
glpB	b2242			2.81			sn-glycerol-3-phosphate dehydrogenase (anaerobic) - membrane anchor subunit
yfaW	b2247					2.07	predicted enolase
yfaX	b2248			2.82	2.21	2.44	predicted DNA-binding transcriptional regulator
menD	b2264			2.60	2.02		bifunctional 2-oxoglutarate decarboxylase and SHCHC synthase
elaB	b2266			0.24	0.17	0.12	conserved protein
yfbL	b2271			2.48			predicted peptidase
nuoN	b2276					0.35	NADH:ubiquinone oxidoreductase - membrane subunit N
nuoM	b2277				0.41	0.24	NADH:ubiquinone oxidoreductase - membrane subunit M
nuoL	b2278				0.48	0.40	NADH:ubiquinone oxidoreductase - membrane subunit L
nuoK	b2279				0.28	0.27	NADH:ubiquinone oxidoreductase - membrane subunit K
nuoI	b2281				0.36	0.32	NADH:ubiquinone oxidoreductase - chain I
nuoG	b2283				0.41	0.43	NADH:ubiquinone oxidoreductase - chain G
nuoF	b2284			0.45	0.27	0.28	NADH:ubiquinone oxidoreductase - chain F
nuoE	b2285			0.48	0.50	0.45	NADH:ubiquinone oxidoreductase - chain E
yfbS	b2292			2.28	2.31		predicted transporter
ackA	b2296			2.44	2.55	2.38	acetate kinase A and propionate kinase 2
yfcG	b2302			0.38		0.47	predicted glutathione S-transferase
hisP	b2306	0.50	0.46	0.37	0.49	0.42	histidine/lysine/arginine/ornithine transporter subunit ; ATP-binding component of ABC superfamily
hisM	b2307			0.33	0.49	0.50	histidine/lysine/arginine/ornithine transporter subunit ; membrane component of ABC superfamily
hisJ	b2309		0.37	0.31	0.23	0.19	histidine/lysine/arginine/ornithine transporter subunit ; periplasmic-binding component of ABC superfamily
argT	b2310		0.17	0.09	0.08	0.10	lysine/arginine/ornithine transporter subunit ; periplasmic-binding component of ABC superfamily
purF	b2312			0.40	0.30	0.39	amidophosphoribosyltransferase
cvpA	b2313		0.28	0.26	0.33	0.24	membrane protein required for colicin V production
aroC	b2329				2.07	2.63	chorismate synthase
yfcX	b2341			0.34	0.34	0.37	fused enoyl-CoA hydratase and epimerase and isomerase ; 3-hydroxyacyl-CoA dehydrogenase
yfcY	b2342			0.26	0.42	0.42	beta-ketoacyl-CoA thiolase - anaerobic - subunit
fadL	b2344			0.20	0.22	0.20	long-chain fatty acid outer membrane transporter
dsdX	b2365		2.14	2.38	2.10		predicted transporter
yfdY	b2377	2.20	2.69	2.33	2.04		predicted inner membrane protein
ypdG	b2386				2.26		predicted enzyme IIC component of PTS
nupC	b2393		0.41	0.45			nucleoside (except guanosine) transporter
yfeC	b2398		3.45	3.56	3.80	3.44	predicted DNA-binding transcriptional regulator
cysM	b2421				0.38	0.44	cysteine synthase B (O-acetylserine sulfhydrolase B)
cysA	b2422				0.30	0.38	sulfate/thiosulfate transporter subunit ; ATP-binding component of ABC superfamily
cysW	b2423M				0.22	0.31	abc-type sulfate transport system - permease component
cysU	b2424			0.23	0.25	0.21	sulfate/thiosulfate transporter subunit ; membrane component of ABC superfamily
cysP	b2425			0.26	0.34	0.27	thiosulfate transporter subunit ; periplasmic-binding component of ABC superfamily
ucpA	b2426		2.98	3.22	2.58	3.05	predicted oxidoredutase - sulfate metabolism protein
yffS	b2450		2.12	2.31	2.19		CPZ-55 prophage; predicted protein
talA	b2464			0.46	0.24	0.21	transaldolase A
tktB	b2465				0.37	0.23	transketolase 2 - thiamin-binding
bcp	b2480	0.42					thiol peroxidase - thioredoxin-dependent
purM	b2499		0.18	0.20	0.19	0.22	phosphoribosylaminoimidazole synthetase
guaB	b2508		0.49	0.48	0.39		IMP dehydrogenase
ndk	b2518	0.20	0.11	0.08	0.12	0.15	multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase
pepB	b2523				0.50	0.50	aminopeptidase B
iscU	b2529				0.47	0.48	scaffold protein
iscS	b2530		0.34	0.21	0.24	0.22	cysteine desulfurase (tRNA sulfurtransferase) - PLP-dependent
iscR	b2531		0.11	0.13	0.12	0.13	DNA-binding transcriptional repressor
yfhQ	b2532		2.02	2.45	2.05	2.12	predicted methyltransferase
csiE	b2535			0.43	0.42	0.33	stationary phase inducible protein
hcaR	b2537		0.16	0.15	0.17	0.10	DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism
yphA	b2543			0.31	0.29	0.24	predicted inner membrane protein
glyA	b2551		0.33	0.47	0.49	0.49	serine hydroxymethyltransferase
yfiD	b2579	7.60	7.66	7.64	5.95	4.54	pyruvate formate lyase subunit
kgtP	b2587		0.29	0.17	0.14	0.11	alpha-ketoglutarate transporter
clpB	b2592				2.05	2.46	protein disaggregation chaperone
yfiA	b2597		3.83	4.79	4.56	4.54	cold shock protein associated with 30S ribosomal subunit
ypjM	b2641				2.80	3.37	CP4-57 prophage; predicted protein (pseudogene)
ygaQ	b2654		2.02	2.02			predicted protein
ygaF	b2660				0.28	0.16	predicted enzyme
gabD	b2661				0.22	0.19	succinate-semialdehyde dehydrogenase I - NADP-dependent
gabT	b2662					0.27	4-aminobutyrate aminotransferase - PLP-dependent
ygaU	b2665			0.48	0.25	0.22	predicted protein
yqaE	b2666				0.38	0.41	predicted membrane protein
ygaM	b2672					0.43	predicted protein
nrdH	b2673			0.37	0.20	0.25	glutaredoxin-like protein
nrdI	b2674				0.25	0.19	protein that stimulates ribonucleotide reduction
proW	b2678				0.40		glycine betaine transporter subunit ; membrane component of ABC superfamily
luxS	b2687			0.46	0.41	0.34	S-ribosylhomocysteinase
ygaD	b2700				2.02		conserved protein
srlA	b2702				2.08	2.36	glucitol/sorbitol-specific enzyme IIC component of PTS
srlR	b2707		2.69	2.92	2.60	2.29	DNA-bindng transcriptional repressor
hypA	b2726	2.61	9.08	9.10	9.75	9.43	protein involved in nickel insertion into hydrogenases 3
hypB	b2727		7.87	13.00	12.31	11.69	GTP hydrolase involved in nickel liganding into hydrogenases
hypC	b2728		3.39	7.00	6.21	5.95	protein required for maturation of hydrogenases 1 and 3
hypD	b2729			4.03	3.48	3.56	protein required for maturation of hydrogenases
hypE	b2730			2.92	3.01	2.89	carbamoyl phosphate phosphatase - hydrogenase 3 maturation protein
rpoS	b2741			0.39	0.41	0.29	RNA polymerase - sigma S (sigma 38) factor
nlpD	b2742			0.42	0.41	0.37	predicted outer membrane lipoprotein
ygbE	b2749			0.24	0.22	0.15	conserved inner membrane protein
cysC	b2750			0.48	0.40	0.41	adenosine 5'-phosphosulfate kinase
cysN	b2751			0.26	0.28	0.25	sulfate adenylyltransferase - subunit 1
cysD	b2752			0.20	0.29	0.31	sulfate adenylyltransferase - subunit 2
cysI	b2763			0.23	0.11	0.16	sulfite reductase - beta subunit - NAD(P)-binding - heme-binding
cysJ	b2764			0.18	0.18	0.20	sulfite reductase - alpha subunit - flavoprotein
ygcN	b2766			2.75		3.23	predicted oxidoreductase with FAD/NAD(P)-binding domain
fucA	b2800		2.02	2.89	3.68	2.60	L-fuculose-1-phosphate aldolase
fucP	b2801					2.22	L-fucose transporter
yqeI	b2847				3.31		predicted transcriptional regulator
xdhA	b2866			2.53	2.17	2.46	xanthine dehydrogenase - molybdenum binding subunit
xdhB	b2867			2.16	2.53	2.44	xanthine dehydrogenase - FAD-binding subunit
ygeW	b2870		2.97	5.89	7.19	7.68	conserved protein
ygeX	b2871			4.63	6.74	6.99	2 -3-diaminopropionate ammonia-lyase
ygeY	b2872				5.38	5.85	predicted peptidase
yqeC	b2876		5.90	8.16	7.00	6.24	conserved protein
ygfJ	b2877					2.60	conserved protein
ygfK	b2878			6.52	8.55	11.14	predicted oxidoreductase - Fe-S subunit
ssnA	b2879			3.13	3.36	4.91	predicted chlorohydrolase/aminohydrolase
ygfM	b2880				5.94	7.10	predicted oxidoreductase
ygfO	b2882					2.40	predicted transporter
metK	b2942		0.26	0.20	0.21	0.15	methionine adenosyltransferase 1
ansB	b2957			4.80	6.00	5.75	periplasmic L-asparaginase II
yqgA	b2966				2.05		predicted inner membrane protein
glcB	b2976				0.35	0.38	malate synthase G
glcG	b2977			0.34	0.26	0.24	conserved protein
glcF	b2978			0.45	0.33	0.32	glycolate oxidase iron-sulfur subunit
glcC	b2980		0.26	0.21	0.21	0.20	DNA-binding transcriptional dual regulator - glycolate-binding
hybE	b2992				2.95	3.15	hydrogenase 2-specific chaperone
hybD	b2993					2.21	predicted maturation element for hydrogenase 2
hybC	b2994			2.16	2.48	3.20	hydrogenase 2 - large subunit
hybB	b2995			3.24	4.57	5.62	predicted hydrogenase 2 cytochrome b type component