Selected Cell
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RI000_centrifuge_kreport
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% | reads | Classif_layer | Classif_ID | Classification_Name | |||||
1.74 | 2874601 | 2874601 | U | 0 | unclassified | ||||
52.28 | 86200010 | 36092 | - | 1 | root | ||||
51.88 | 85547765 | 0 | - | 131567 | cellular organisms | ||||
49.3 | 81300540 | 2584 | D | 2 | Bacteria | ||||
34.25 | 56469351 | 0 | - | 1783272 | Terrabacteria group | ||||
34.24 | 56454456 | 160 | P | 1239 | Firmicutes | ||||
34.23 | 56448087 | 332 | C | 91061 | Bacilli | ||||
19.03 | 31381492 | 341 | O | 1385 | Bacillales | ||||
6.65 | 10965518 | 1311 | F | 186820 | Listeriaceae | ||||
6.65 | 10964192 | 141 | G | 1637 | Listeria | ||||
6.61 | 10903627 | 10408330 | S | 1639 | Listeria monocytogenes | ||||
0.07 | 118153 | 118153 | - | 930781 | Listeria monocytogenes J1816 | ||||
0.06 | 91347 | 91347 | - | 882095 | Listeria monocytogenes ATCC 19117 | ||||
0.04 | 72705 | 72705 | - | 930782 | Listeria monocytogenes J1-220 | ||||
0.03 | 43870 | 43870 | - | 879089 | Listeria monocytogenes SLCC2540 | ||||
0.02 | 30254 | 30254 | - | 1196161 | Listeria monocytogenes serotype 4b str. 81-0861 | ||||
0.01 | 20571 | 20571 | - | 568819 | Listeria monocytogenes serotype 4b str. CLIP 80459 | ||||
0.01 | 19651 | 19651 | - | 1126011 | Listeria monocytogenes 07PF0776 | ||||
0.01 | 19109 | 19109 | - | 882094 | Listeria monocytogenes L312 | ||||
0.01 | 18248 | 18248 | - | 863767 | Listeria monocytogenes serotype 7 str. SLCC2482 | ||||
0.01 | 14411 | 14411 | - | 932919 | Listeria monocytogenes SLCC2755 | ||||
0.01 | 11570 | 11570 | - | 552536 | Listeria monocytogenes HCC23 | ||||
0 | 4428 | 4428 | - | 879088 | Listeria monocytogenes SLCC2378 | ||||
0 | 4056 | 4056 | - | 169963 | Listeria monocytogenes EGD-e | ||||
0 | 3382 | 3382 | - | 879090 | Listeria monocytogenes SLCC7179 | ||||
0 | 3093 | 3093 | - | 1030009 | Listeria monocytogenes M7 | ||||
0 | 3015 | 3015 | - | 563174 | Listeria monocytogenes L99 | ||||
0 | 2590 | 2590 | - | 393130 | Listeria monocytogenes J0161 | ||||
0 | 2527 | 2527 | - | 1457188 | Listeria monocytogenes WSLC1042 | ||||
0 | 2436 | 2436 | - | 265669 | Listeria monocytogenes serotype 4b str. F2365 | ||||
0 | 2187 | 2187 | - | 1230340 | Listeria monocytogenes serotype 4b str. LL195 | ||||
0 | 1776 | 1776 | - | 882097 | Listeria monocytogenes SLCC2376 | ||||
0 | 1442 | 1442 | - | 1288295 | Listeria monocytogenes 6179 | ||||
0 | 1095 | 1095 | - | 393127 | Listeria monocytogenes Finland 1998 | ||||
0 | 819 | 819 | - | 393126 | Listeria monocytogenes FSL R2-561 | ||||
0 | 807 | 807 | - | 1234142 | Listeria monocytogenes N53-1 | ||||
0 | 555 | 0 | - | 1906951 | Listeria monocytogenes serotype 1/2a | ||||
0 | 506 | 506 | - | 1196176 | Listeria monocytogenes serotype 1/2a str. 88-0478 | ||||
0 | 15 | 15 | - | 1196184 | Listeria monocytogenes serotype 1/2a str. 08-6997 | ||||
0 | 12 | 12 | - | 1196183 | Listeria monocytogenes serotype 1/2a str. 08-6569 | ||||
0 | 12 | 12 | - | 1196188 | Listeria monocytogenes serotype 1/2a str. 10-0815 | ||||
0 | 5 | 5 | - | 1196190 | Listeria monocytogenes serotype 1/2a str. 10-1047 | ||||
0 | 3 | 3 | - | 1385996 | Listeria monocytogenes serotype 1/2a str. 01-1280 | ||||
0 | 450 | 450 | - | 882020 | Listeria monocytogenes SLCC2479 | ||||
0 | 444 | 444 | - | 932920 | Listeria monocytogenes SLCC2372 | ||||
0 | 206 | 206 | - | 393133 | Listeria monocytogenes 10403S | ||||
0 | 28 | 28 | - | 1437838 | Listeria monocytogenes R479a | ||||
0 | 27 | 27 | - | 1457187 | Listeria monocytogenes WSLC1001 | ||||
0 | 20 | 20 | - | 653938 | Listeria monocytogenes 08-5578 | ||||
0 | 4 | 4 | - | 882096 | Listeria monocytogenes SLCC5850 | ||||
0 | 2 | 2 | - | 637381 | Listeria monocytogenes 08-5923 | ||||
0 | 0 | 0 | - | 1334565 | Listeria monocytogenes EGD | ||||
0 | 0 | 0 | - | 945968 | Listeria monocytogenes 690 | ||||
0.02 | 28739 | 4893 | S | 1642 | Listeria innocua | ||||
0.01 | 23846 | 23846 | - | 272626 | Listeria innocua Clip11262 | ||||
0.01 | 18833 | 5970 | S | 1638 | Listeria ivanovii | ||||
0 | 5659 | 2967 | - | 202751 | Listeria ivanovii subsp. ivanovii | ||||
0 | 2692 | 2692 | - | 881621 | Listeria ivanovii subsp. ivanovii PAM 55 | ||||
0 | 4525 | 4525 | - | 202752 | Listeria ivanovii subsp. londoniensis | ||||
0 | 2677 | 2677 | - | 1457190 | Listeria ivanovii WSLC3009 | ||||
0 | 5909 | 63 | S | 1643 | Listeria welshimeri | ||||
0 | 5846 | 5846 | - | 386043 | Listeria welshimeri serovar 6b str. SLCC5334 | ||||
0 | 4576 | 1632 | S | 1640 | Listeria seeligeri | ||||
0 | 2943 | 2943 | - | 683837 | Listeria seeligeri serovar 1/2b str. SLCC3954 | ||||
0 | 0 | 0 | - | 702453 | Listeria seeligeri FSL N1-067 | ||||
0 | 1225 | 0 | - | 592374 | environmental samples | ||||
0 | 1225 | 1225 | S | 592375 | uncultured Listeria sp. | ||||
0 | 1042 | 1038 | S | 529731 | Listeria marthii | ||||
0 | 3 | 3 | - | 702457 | Listeria marthii FSL S4-120 | ||||
0 | 54 | 35 | S | 1641 | Listeria grayi | ||||
0 | 18 | 18 | - | 525367 | Listeria grayi DSM 20601 | ||||
0 | 17 | 17 | S | 386333 | Listeria sp. LM4305 | ||||
0 | 5 | 5 | S | 1006155 | Listeria weihenstephanensis | ||||
0 | 4 | 4 | S | 1035157 | Listeria sp. GP3 | ||||
0 | 3 | 3 | S | 1908498 | Listeria sp. KSUM_72 | ||||
0 | 2 | 2 | S | 319384 | Listeria sp. 102 | ||||
0 | 2 | 2 | S | 217065 | Listeria sp. 151 | ||||
0 | 1 | 1 | S | 1494960 | Listeria aquatica | ||||
0 | 1 | 1 | S | 1908492 | Listeria sp. KSUM_62 | ||||
0 | 0 | 0 | S | 647910 | Listeria rocourtiae | ||||
0 | 0 | 0 | S | 1649187 | Listeria sp. ILCC793 | ||||
0 | 0 | 0 | S | 1649188 | Listeria sp. ILCC801 | ||||
0 | 0 | 0 | S | 1069827 | Listeria fleischmannii | ||||
0 | 0 | 0 | S | 1494962 | Listeria floridensis | ||||
0 | 0 | 0 | S | 1844999 | Listeria sp. PSOL-1 | ||||
0 | 0 | 0 | S | 1494964 | Listeria riparia | ||||
0 | 0 | 0 | S | 1552123 | Listeria booriae | ||||
0 | 14 | 0 | G | 2755 | Brochothrix | ||||
0 | 12 | 10 | S | 2756 | Brochothrix thermosphacta | ||||
0 | 1 | 1 | - | 1121126 | Brochothrix thermosphacta DSM 20171 = FSL F6-1036 | ||||
0 | 0 | 0 | S | 2757 | Brochothrix campestris | ||||
0 | 0 | 0 | S | 1679036 | Brochothrix sp. S2 | ||||
0 | 0 | 0 | - | 319956 | environmental samples | ||||
0 | 0 | 0 | S | 319957 | uncultured Brochothrix sp. | ||||
6.33 | 10437662 | 1368 | F | 90964 | Staphylococcaceae | ||||
6.33 | 10436144 | 53298 | G | 1279 | Staphylococcus | ||||
6.2 | 10225403 | 9544558 | S | 1280 | Staphylococcus aureus | ||||
0.4 | 659901 | 443162 | - | 46170 | Staphylococcus aureus subsp. aureus | ||||
0.06 | 96076 | 96076 | - | 548473 | Staphylococcus aureus subsp. aureus TCH60 | ||||
0.01 | 13347 | 13347 | - | 1006543 | Staphylococcus aureus subsp. aureus T0131 | ||||
0.01 | 12480 | 12480 | - | 1381115 | Staphylococcus aureus subsp. aureus Tager 104 | ||||
0 | 8101 | 8101 | - | 1406863 | Staphylococcus aureus subsp. aureus Z172 | ||||
0 | 7950 | 7950 | - | 546342 | Staphylococcus aureus subsp. aureus str. JKD6008 | ||||
0 | 6140 | 6140 | - | 685039 | Staphylococcus aureus subsp. aureus ED133 | ||||
0 | 5701 | 5701 | - | 869816 | Staphylococcus aureus subsp. aureus JKD6159 | ||||
0 | 5396 | 5396 | - | 1392476 | Staphylococcus aureus subsp. aureus 6850 | ||||
0 | 4362 | 4362 | - | 663951 | Staphylococcus aureus subsp. aureus TW20 | ||||
0 | 4195 | 4195 | - | 985006 | Staphylococcus aureus subsp. aureus LGA251 | ||||
0 | 4042 | 4042 | - | 282459 | Staphylococcus aureus subsp. aureus MSSA476 | ||||
0 | 3955 | 3955 | - | 282458 | Staphylococcus aureus subsp. aureus MRSA252 | ||||
0 | 3893 | 3893 | - | 1028799 | Staphylococcus aureus subsp. aureus VC40 | ||||
0 | 3506 | 3506 | - | 1074252 | Staphylococcus aureus subsp. aureus HO 5096 0412 | ||||
0 | 3474 | 3474 | - | 196620 | Staphylococcus aureus subsp. aureus MW2 | ||||
0 | 3307 | 3307 | - | 1123523 | Staphylococcus aureus subsp. aureus 11819-97 | ||||
0 | 3000 | 2989 | - | 93061 | Staphylococcus aureus subsp. aureus NCTC 8325 | ||||
0 | 10 | 10 | - | 561307 | Staphylococcus aureus subsp. aureus RN4220 | ||||
0 | 2735 | 2735 | - | 426430 | Staphylococcus aureus subsp. aureus str. Newman | ||||
0 | 2612 | 2612 | - | 1241616 | Staphylococcus aureus subsp. aureus DSM 20231 | ||||
0 | 2540 | 2540 | - | 93062 | Staphylococcus aureus subsp. aureus COL | ||||
0 | 2431 | 2431 | - | 1118959 | Staphylococcus aureus subsp. aureus M013 | ||||
0 | 2427 | 0 | - | 1196216 | Staphylococcus aureus subsp. aureus ST72 | ||||
0 | 2427 | 2427 | - | 1193576 | Staphylococcus aureus subsp. aureus CN1 | ||||
0 | 2202 | 2202 | - | 359786 | Staphylococcus aureus subsp. aureus JH9 | ||||
0 | 2154 | 2154 | - | 1343064 | Staphylococcus aureus subsp. aureus ST772-MRSA-V | ||||
0 | 2034 | 2034 | - | 681288 | Staphylococcus aureus subsp. aureus ED98 | ||||
0 | 1924 | 1924 | - | 359787 | Staphylococcus aureus subsp. aureus JH1 | ||||
0 | 1482 | 1482 | - | 1368166 | Staphylococcus aureus subsp. aureus SA268 | ||||
0 | 1300 | 1300 | - | 585143 | Staphylococcus aureus subsp. aureus 55/2053 | ||||
0 | 1110 | 479 | - | 523796 | Staphylococcus aureus subsp. aureus ST398 | ||||
0 | 631 | 631 | - | 1155084 | Staphylococcus aureus subsp. aureus 71193 | ||||
0 | 714 | 0 | - | 367830 | Staphylococcus aureus subsp. aureus USA300 | ||||
0 | 697 | 697 | - | 451515 | Staphylococcus aureus subsp. aureus USA300_FPR3757 | ||||
0 | 17 | 17 | - | 451516 | Staphylococcus aureus subsp. aureus USA300_TCH1516 | ||||
0 | 480 | 480 | - | 1201010 | Staphylococcus aureus subsp. aureus SA957 | ||||
0 | 408 | 408 | - | 889933 | Staphylococcus aureus subsp. aureus ECT-R 2 | ||||
0 | 344 | 344 | - | 1194085 | Staphylococcus aureus subsp. aureus SA40 | ||||
0 | 309 | 309 | - | 1074919 | Staphylococcus aureus subsp. aureus ST228 | ||||
0 | 303 | 303 | - | 158878 | Staphylococcus aureus subsp. aureus Mu50 | ||||
0 | 232 | 232 | - | 418127 | Staphylococcus aureus subsp. aureus Mu3 | ||||
0 | 44 | 44 | - | 158879 | Staphylococcus aureus subsp. aureus N315 | ||||
0 | 5 | 5 | - | 1144272 | Staphylococcus aureus subsp. aureus GR1 | ||||
0 | 2 | 2 | - | 1221452 | Staphylococcus aureus subsp. aureus 333 | ||||
0 | 2 | 2 | - | 1221451 | Staphylococcus aureus subsp. aureus 120 | ||||
0 | 2 | 2 | - | 1144271 | Staphylococcus aureus subsp. aureus 118 | ||||
0 | 0 | 0 | - | 1226740 | Staphylococcus aureus subsp. aureus VH60 | ||||
0 | 7920 | 7920 | - | 273036 | Staphylococcus aureus RF122 | ||||
0 | 6637 | 6637 | - | 1321369 | Staphylococcus aureus Bmb9393 | ||||
0 | 3035 | 3035 | - | 1323661 | Staphylococcus aureus CA-347 | ||||
0 | 1908 | 1908 | - | 1305598 | Staphylococcus aureus M1 | ||||
0 | 813 | 813 | - | 1229492 | Staphylococcus aureus 08BA02176 | ||||
0 | 271 | 271 | - | 903521 | Staphylococcus aureus SK6575 | ||||
0 | 177 | 177 | - | 1458279 | Staphylococcus aureus USA300-ISMMS1 | ||||
0 | 166 | 166 | - | 703339 | Staphylococcus aureus 04-02981 | ||||
0 | 4 | 4 | - | 72759 | Staphylococcus aureus subsp. anaerobius | ||||
0 | 3 | 3 | - | 1147034 | Staphylococcus aureus PM1 | ||||
0 | 2 | 2 | - | 1278071 | Staphylococcus aureus 3957 | ||||
0 | 1 | 1 | - | 1278072 | Staphylococcus aureus LVP2 | ||||
0.03 | 53763 | 39495 | S | 1282 | Staphylococcus epidermidis | ||||
0.01 | 10813 | 10813 | - | 176279 | Staphylococcus epidermidis RP62A | ||||
0 | 2818 | 2818 | - | 176280 | Staphylococcus epidermidis ATCC 12228 | ||||
0 | 635 | 635 | - | 1449752 | Staphylococcus epidermidis PM221 | ||||
0.03 | 42339 | 27405 | S | 283734 | Staphylococcus pseudintermedius | ||||
0.01 | 14918 | 14918 | - | 984892 | Staphylococcus pseudintermedius ED99 | ||||
0 | 15 | 15 | - | 937773 | Staphylococcus pseudintermedius HKU10-03 | ||||
0.01 | 23556 | 23556 | S | 985002 | Staphylococcus argenteus | ||||
0.01 | 9217 | 2867 | S | 1296 | Staphylococcus sciuri | ||||
0 | 6346 | 0 | - | 147468 | Staphylococcus sciuri subsp. carnaticus | ||||
0 | 6345 | 6345 | - | 1407065 | Staphylococcus sciuri subsp. carnaticus GVGS2 | ||||
0 | 3 | 3 | - | 147467 | Staphylococcus sciuri subsp. sciuri | ||||
0 | 1 | 1 | - | 147469 | Staphylococcus sciuri subsp. rodentium | ||||
0 | 4943 | 4942 | S | 29382 | Staphylococcus cohnii | ||||
0 | 0 | 0 | - | 94138 | Staphylococcus cohnii subsp. urealyticus | ||||
0 | 0 | 0 | - | 74704 | Staphylococcus cohnii subsp. cohnii | ||||
0 | 4150 | 420 | S | 1286 | Staphylococcus simulans | ||||
0 | 3729 | 3729 | - | 1287 | Staphylococcus simulans bv. staphylolyticus | ||||
0 | 3889 | 3199 | S | 1283 | Staphylococcus haemolyticus | ||||
0 | 690 | 690 | - | 279808 | Staphylococcus haemolyticus JCSC1435 | ||||
0 | 3382 | 2811 | S | 28035 | Staphylococcus lugdunensis | ||||
0 | 550 | 550 | - | 698737 | Staphylococcus lugdunensis HKU09-01 | ||||
0 | 19 | 19 | - | 1034809 | Staphylococcus lugdunensis N920143 | ||||
0 | 2965 | 2965 | S | 678600 | Staphylococcus sp. CDC25 | ||||
0 | 2362 | 2267 | S | 1292 | Staphylococcus warneri | ||||
0 | 95 | 95 | - | 1194526 | Staphylococcus warneri SG1 | ||||
0 | 959 | 959 | S | 42858 | Staphylococcus lentus | ||||
0 | 873 | 866 | S | 1285 | Staphylococcus intermedius | ||||
0 | 7 | 7 | - | 1141106 | Staphylococcus intermedius NCTC 11048 | ||||
0 | 816 | 809 | S | 1290 | Staphylococcus hominis | ||||
0 | 3 | 3 | - | 145393 | Staphylococcus hominis subsp. novobiosepticus | ||||
0 | 2 | 2 | - | 145391 | Staphylococcus hominis subsp. hominis | ||||
0 | 722 | 0 | - | 129707 | environmental samples | ||||
0 | 721 | 721 | S | 189668 | uncultured Staphylococcus sp. | ||||
0 | 0 | 0 | S | 763884 | Staphylococcus sp. enrichment culture clone SRC_DSE19 | ||||
0 | 0 | 0 | S | 763881 | Staphylococcus sp. enrichment culture clone SRC_DSE16 | ||||
0 | 0 | 0 | S | 763885 | Staphylococcus sp. enrichment culture clone SRC_DSE21 | ||||
0 | 497 | 61 | S | 29388 | Staphylococcus capitis | ||||
0 | 372 | 372 | - | 72758 | Staphylococcus capitis subsp. capitis | ||||
0 | 63 | 63 | - | 1296619 | Staphylococcus capitis CR01 | ||||
0 | 484 | 458 | S | 29385 | Staphylococcus saprophyticus | ||||
0 | 26 | 3 | - | 147452 | Staphylococcus saprophyticus subsp. saprophyticus |