Selected Cell
Cell:
Value:
RI000_centrifuge_kreport
A
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I
J
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0 | 0 | 0 | S | 1495076 | Cloning vector pMRI-32 | ||||
0 | 0 | 0 | S | 1655396 | Expression vector pWCD2353 | ||||
0 | 0 | 0 | S | 37161 | Cloning vector pTRXFUS | ||||
0 | 0 | 0 | S | 46658 | Cloning vector pZEO-SG4 | ||||
0 | 0 | 0 | S | 72145 | Cloning vector pBIOTRX-BirA | ||||
0 | 0 | 0 | S | 81004 | Expression vector pSKAP/S | ||||
0 | 0 | 0 | S | 108616 | Cloning vector pTEX-Z | ||||
0 | 0 | 0 | S | 118311 | Cloning vector pCS19 | ||||
0 | 0 | 0 | S | 1352335 | Cloning vector pKIKOarsBCm | ||||
0 | 0 | 0 | S | 1352336 | Cloning vector pKIKOarsBKm | ||||
0 | 0 | 0 | S | 1412973 | Cloning and expression vector pCEV-G1-Km | ||||
0 | 0 | 0 | S | 1412974 | Cloning and expression vector pCEV-G1-Ph | ||||
0 | 0 | 0 | S | 41435 | Cloning vector pACT2 | ||||
0 | 0 | 0 | S | 248461 | Ribosome display vector pRDV | ||||
0 | 0 | 0 | S | 257530 | Integration vector pSac-Kan | ||||
0 | 0 | 0 | S | 416400 | Integration vector pIS375 | ||||
0 | 0 | 0 | S | 502052 | Cloning vector pBC542 | ||||
0 | 0 | 0 | S | 641604 | Cloning vector pKIGW | ||||
0 | 0 | 0 | S | 693962 | Cloning and transformation vector pHPdestVenus | ||||
0 | 0 | 0 | S | 693963 | Cloning and transformation vector pHPdesteGFP | ||||
0 | 0 | 0 | S | 693964 | Cloning and transformation vector pHPdestmCherry | ||||
0 | 0 | 0 | S | 796092 | Plant RNAi vector pRNAi-LIC | ||||
0 | 0 | 0 | S | 908465 | Cloning vector pKaKa2 | ||||
0 | 0 | 0 | S | 1269197 | Expression vector pUDE172 | ||||
0 | 0 | 0 | S | 1432850 | Phagemid vector pAYE | ||||
0 | 0 | 0 | S | 1545806 | S. aureus-E. coli shuttle vector pBUS1-Pcap | ||||
0 | 0 | 0 | S | 1545807 | S. aureus-E. coli shuttle vector pBUS1-Pcap-HC | ||||
0 | 0 | 0 | S | 1740676 | Gateway entry vector pMpGE_En03 | ||||
0 | 0 | 0 | S | 31785 | Cloning vector lambda gt10 | ||||
0 | 0 | 0 | S | 41869 | Cloning vector pAS2 | ||||
0 | 0 | 0 | S | 42098 | Cloning vector pAS2-1 | ||||
0 | 0 | 0 | S | 43359 | Cloning vector YITAG100 | ||||
0 | 0 | 0 | S | 92756 | Cloning vector pHIND2.2 | ||||
0 | 0 | 0 | S | 123563 | Shuttle vector pCOM9 | ||||
0 | 0 | 0 | S | 233878 | Shuttle vector pCOMT-Kan | ||||
0 | 0 | 0 | S | 233895 | Shuttle vector pLEIItd+KR'' | ||||
0 | 0 | 0 | S | 410004 | Inducible protein expression vector pReg Neo | ||||
0 | 0 | 0 | S | 416402 | Integration vector pIS385 | ||||
0 | 0 | 0 | S | 563906 | Retroviral expression vector L149 | ||||
0 | 0 | 0 | S | 860080 | Cloning vector pInSRT-GFPV1 | ||||
0 | 0 | 0 | S | 1034055 | Artificial vector pJL531 | ||||
0 | 0 | 0 | S | 1088646 | Cloning vector pSI-DAL2 | ||||
0 | 0 | 0 | S | 1088648 | Cloning vector pSI-DCP2 | ||||
0 | 0 | 0 | S | 1088650 | Cloning vector pSI-DGB2 | ||||
0 | 0 | 0 | S | 1088652 | Cloning vector pSI-DST2 | ||||
0 | 0 | 0 | S | 1547497 | Expression vector pBIG-5b | ||||
0 | 0 | 0 | S | 1603883 | Shuttle vector pNR-46158 | ||||
0 | 0 | 0 | S | 1776677 | Cloning vector pAAV-hSyn-CRMP2-hSyn-mCherry | ||||
0 | 0 | 0 | S | 44121 | Cloning vector pINIIIompA3 | ||||
0 | 0 | 0 | S | 44122 | Cloning vector pOR262 | ||||
0 | 0 | 0 | S | 46655 | Cloning vector pZEO-SG1 | ||||
0 | 0 | 0 | S | 46656 | Cloning vector pZEO-SG2 | ||||
0 | 0 | 0 | S | 52005 | Cloning vector pZGT5 | ||||
0 | 0 | 0 | S | 175804 | Shuttle integration vector pPL2 | ||||
0 | 0 | 0 | S | 176101 | Shuttle integration vector pPL1 | ||||
0 | 0 | 0 | S | 248895 | Expression vector pVTU263 | ||||
0 | 0 | 0 | S | 296595 | Cloning vector pHUE | ||||
0 | 0 | 0 | S | 468515 | Cloning vector pCC1BAC | ||||
0 | 0 | 0 | S | 500612 | Cloning vector pIMK | ||||
0 | 0 | 0 | S | 500613 | Cloning vector pIMC | ||||
0 | 0 | 0 | S | 748102 | Cloning vector pTARa | ||||
0 | 0 | 0 | S | 1130059 | Cloning vector pADH70 | ||||
0 | 0 | 0 | S | 1130060 | Cloning vector pADH77 | ||||
0 | 0 | 0 | S | 1298539 | Cloning vector pDAL649 | ||||
0 | 0 | 0 | S | 1403156 | Cloning vector pFM141 | ||||
0 | 0 | 0 | S | 1403158 | Cloning vector pJAC90 | ||||
0 | 0 | 0 | S | 1403159 | Cloning vector pJAC91 | ||||
0 | 0 | 0 | S | 1449698 | Cloning vector pCotG-C | ||||
0 | 0 | 0 | S | 1449699 | Cloning vector pCotG-CL | ||||
0 | 0 | 0 | S | 1449700 | Cloning vector pCotG-N | ||||
0 | 0 | 0 | S | 1449701 | Cloning vector pCotG-NL | ||||
0 | 0 | 0 | S | 1506527 | Integration vector pCFP_Star | ||||
0 | 0 | 0 | S | 1506528 | Integration vector pGFP_Star | ||||
0 | 0 | 0 | S | 1506529 | Integration vector pYFP_Star | ||||
0 | 0 | 0 | S | 1516111 | Integrating vector CIpNAT | ||||
0 | 0 | 0 | S | 1655160 | Cloning vector pPt0521S_URA | ||||
0 | 0 | 0 | S | 1655161 | Cloning vector pPtPuc3 | ||||
0 | 0 | 0 | S | 1655162 | Cloning vector pTpPuc3 | ||||
0 | 0 | 0 | S | 1747506 | Cloning vector pSFS2AS | ||||
0 | 0 | 0 | S | 1816700 | Cloning vector pUAST-attB-stop-SuVar-MycDam | ||||
0 | 0 | 0 | S | 1822054 | Cloning vector pCC-chi-cat | ||||
0 | 0 | 0 | S | 1822057 | Cloning vector reBmBac | ||||
0 | 0 | 0 | S | 1842707 | Mammalian expression vector pCI-NEO-FLAG-SMN | ||||
0 | 0 | 0 | S | 1842708 | Mammalian expression vector pCI-NEO-FLAG-SMNdelta3 | ||||
0 | 0 | 0 | S | 1842710 | Mammalian expression vector pCI-NEO-FLAG-SMNdelta3,5 | ||||
0 | 0 | 0 | S | 1842714 | Mammalian expression vector pCI-NEO-FLAG-SMNdelta5 | ||||
0 | 0 | 0 | S | 1886769 | Expression vector pUMLIEP | ||||
0 | 0 | 0 | S | 1903327 | Cloning vector pVT77 | ||||
0 | 225 | 0 | - | 488338 | synthetic organisms | ||||
0 | 212 | 212 | S | 488339 | synthetic Mycoplasma genitalium JCVI-1.0 | ||||
0 | 5 | 5 | S | 1806462 | synthetic bacterium JCVI-Syn3.0 | ||||
0 | 4 | 4 | S | 766747 | synthetic Mycoplasma mycoides JCVI-syn1.0 | ||||
0 | 3 | 3 | S | 1822058 | synthetic bacerium JCVI-Syn2.0 | ||||
0 | 6537 | 0 | - | 36549 | plasmids | ||||
0 | 4854 | 4854 | S | 2520 | Plasmid pAD1 | ||||
0 | 517 | 517 | S | 2554 | Plasmid pEX102 | ||||
0 | 418 | 418 | S | 1003194 | Plasmid pMCBF1 | ||||
0 | 326 | 326 | S | 2505 | Plasmid RSF1030 | ||||
0 | 256 | 256 | S | 2564 | Plasmid pI258 | ||||
0 | 54 | 54 | S | 35410 | Plasmid IncF | ||||
0 | 23 | 23 | S | 2465 | Plasmid F | ||||
0 | 22 | 22 | S | 223953 | Plasmid pIlo1 | ||||
0 | 22 | 22 | S | 223954 | Plasmid pIlo8 | ||||
0 | 19 | 19 | S | 2561 | Plasmid pHH507 | ||||
0 | 5 | 5 | S | 2638 | Plasmid pT181 | ||||
0 | 3 | 3 | S | 2620 | Plasmid pSA209 | ||||
0 | 2 | 2 | S | 2485 | Plasmid R386 | ||||
0 | 2 | 2 | S | 2560 | Plasmid pHH502 | ||||
0 | 2 | 2 | S | 37746 | Plasmid pSU316 | ||||
0 | 1 | 1 | S | 2518 | Plasmid pAC27 | ||||
0 | 1 | 1 | S | 2457 | Plasmid ColV-K30 | ||||
0 | 1 | 1 | S | 2458 | Plasmid ColV2-K94 | ||||
0 | 1 | 1 | S | 2574 | Plasmid pIP501 | ||||
0 | 0 | 0 | S | 36541 | Plasmid pYME1 | ||||
0 | 4406 | 0 | - | 2673 | insertion sequences | ||||
0 | 4406 | 4406 | S | 33797 | Insertion sequence IS6770 | ||||
0 | 5787 | 223 | - | 12908 | unclassified sequences | ||||
0 | 5358 | 0 | - | 151659 | environmental samples | ||||
0 | 2750 | 2750 | S | 155900 | uncultured organism | ||||
0 | 2399 | 2399 | S | 358574 | uncultured microorganism | ||||
0 | 148 | 0 | - | 81490 | prokaryotic environmental samples | ||||
0 | 146 | 146 | S | 198431 | uncultured prokaryote | ||||
0 | 1 | 1 | S | 455546 | uncultured marine microorganism HF4000_APKG2J17 | ||||
0 | 0 | 0 | S | 941421 | uncultured organism CA878 | ||||
0 | 50 | 50 | S | 1457551 | uncultured soil microorganism | ||||
0 | 7 | 7 | S | 360281 | uncultured marine organism | ||||
0 | 1 | 1 | S | 81726 | unidentified microorganism | ||||
0 | 0 | 0 | S | 415540 | uncultured marine microorganism | ||||
0 | 205 | 205 | S | 32644 | unidentified | ||||
Zymobiomics standard composition % (theoretical) | kraken% S | kraken% G | |||||||
Species | Theoretical (Zymo) | 16S | 16S&18S | Genome copy | Cell Number | Sequenced | |||
Pseudomonas aeruginosa | 12 | 4.2 | 3.6 | 6.1 | 6.1 | 4.92 | 5.01 | ||
Escherichia coli | 12 | 10.1 | 8.9 | 8.5 | 8.5 | 4.64 | 4.66 | ||
Salmonella enterica | 12 | 10.4 | 9.1 | 8.7 | 8.7 | 4.66 | 4.67 | ||
Lactobacillus fermentum | 12 | 18.4 | 16.1 | 21.6 | 21.4 | 8.45 | 9.13 | ||
Enterococcus faecalis | 12 | 9.9 | 8.7 | 14.6 | 14.5 | 5.23 | 6.03 | ||
Staphylococcus aureus | 12 | 15.5 | 13.6 | 15.2 | 15.1 | 6.2 | 6.33 | ||
Listeria monocytogenes | 12 | 14.1 | 12.4 | 13.9 | 13.8 | 6.61 | 6.65 | ||
Bacillus subtilis | 12 | 17.4 | 15.3 | 10.3 | 10.2 | 6.01 | 6.05 | ||
Saccharomyces cerevisiae | 2 | NA | 9.3 | 0.57 | 1.13 | 0.8 | 0.81 | ||
Cryptococcus neoformans | 2 | NA | 3.3 | 0.37 | 0.73 | 1.62 | 1.63 |