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| # PacBio Rywal assembly | |||||||||
| # Evigene 2016 summary statistics | |||||||||
| PacBio number of input sequences | 10564 | evigene okay sequences | 4119 | ||||||
| evigene dropped sequences | 6445 | 4177 | matched sequences from CLC de novo assemblies (CLCdn) | ||||||
| 899 | matched other PacBio sequence (PBdn) | ||||||||
| 78 | matched sequences from Velvet de novo assemblies (Vdn) | ||||||||
| 1291 | matched sequences from Spades de novo assemblies (Sdn) | ||||||||
| evigene defined additional utrorfs | 2314 | ||||||||
| assembly/transcriptome | |||||||||
| evigene sequence analysis classification | CLCdn | PBdn | Sdn | Vdn | Grand Total | ||||
| althi | 282 | 83 | 122 | 11 | 498 | ||||
| althi1 | 3176 | 604 | 868 | 48 | 4696 | ||||
| althia2 | 68 | 18 | 36 | 3 | 125 | ||||
| altmid | 1 | 1 | 2 | ||||||
| altmidfrag | 1 | 1 | |||||||
| main | 4 | 2 | 3 | 9 | |||||
| noclass | 4 | 4 | |||||||
| parthi | 355 | 120 | 161 | 4 | 640 | ||||
| parthi1 | 283 | 69 | 96 | 7 | 455 | ||||
| parthia2 | 8 | 1 | 6 | 15 | |||||
| Grand Total | 4177 | 899 | 1291 | 78 | 6445 | ||||
| assembly/transcriptome | |||||||||
| evigene sequence quality classification | CLCdn | PBdn | Sdn | Vdn | Grand Total | ||||
| complete | 1888 | 284 | 392 | 21 | 2585 | ||||
| complete-utrbad | 1151 | 345 | 485 | 31 | 2012 | ||||
| complete-utrpoor | 1038 | 240 | 368 | 19 | 1665 | ||||
| partial | 2 | 1 | 3 | ||||||
| partial3 | 17 | 6 | 6 | 29 | |||||
| partial3-utrbad | 4 | 5 | 3 | 1 | 13 | ||||
| partial3-utrpoor | 4 | 4 | |||||||
| partial5 | 22 | 5 | 13 | 2 | 42 | ||||
| partial5-utrbad | 37 | 12 | 18 | 4 | 71 | ||||
| partial5-utrpoor | 14 | 1 | 6 | 21 | |||||
| Grand Total | 4177 | 899 | 1291 | 78 | 6445 | ||||
| # find more about evigene sequence classification at https://ncgas.org/Blog_Posts/EviGene.php |
