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PBdn_evigeneSummaryStat
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# PacBio Rywal assembly | |||||||||
# Evigene 2016 summary statistics | |||||||||
PacBio number of input sequences | 10564 | evigene okay sequences | 4119 | ||||||
evigene dropped sequences | 6445 | 4177 | matched sequences from CLC de novo assemblies (CLCdn) | ||||||
899 | matched other PacBio sequence (PBdn) | ||||||||
78 | matched sequences from Velvet de novo assemblies (Vdn) | ||||||||
1291 | matched sequences from Spades de novo assemblies (Sdn) | ||||||||
evigene defined additional utrorfs | 2314 | ||||||||
assembly/transcriptome | |||||||||
evigene sequence analysis classification | CLCdn | PBdn | Sdn | Vdn | Grand Total | ||||
althi | 282 | 83 | 122 | 11 | 498 | ||||
althi1 | 3176 | 604 | 868 | 48 | 4696 | ||||
althia2 | 68 | 18 | 36 | 3 | 125 | ||||
altmid | 1 | 1 | 2 | ||||||
altmidfrag | 1 | 1 | |||||||
main | 4 | 2 | 3 | 9 | |||||
noclass | 4 | 4 | |||||||
parthi | 355 | 120 | 161 | 4 | 640 | ||||
parthi1 | 283 | 69 | 96 | 7 | 455 | ||||
parthia2 | 8 | 1 | 6 | 15 | |||||
Grand Total | 4177 | 899 | 1291 | 78 | 6445 | ||||
assembly/transcriptome | |||||||||
evigene sequence quality classification | CLCdn | PBdn | Sdn | Vdn | Grand Total | ||||
complete | 1888 | 284 | 392 | 21 | 2585 | ||||
complete-utrbad | 1151 | 345 | 485 | 31 | 2012 | ||||
complete-utrpoor | 1038 | 240 | 368 | 19 | 1665 | ||||
partial | 2 | 1 | 3 | ||||||
partial3 | 17 | 6 | 6 | 29 | |||||
partial3-utrbad | 4 | 5 | 3 | 1 | 13 | ||||
partial3-utrpoor | 4 | 4 | |||||||
partial5 | 22 | 5 | 13 | 2 | 42 | ||||
partial5-utrbad | 37 | 12 | 18 | 4 | 71 | ||||
partial5-utrpoor | 14 | 1 | 6 | 21 | |||||
Grand Total | 4177 | 899 | 1291 | 78 | 6445 | ||||
# find more about evigene sequence classification at https://ncgas.org/Blog_Posts/EviGene.php |